MD07G1111800.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010936
Physical Location & Seq
Reverse (-)
12958022 .. 12959433
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1111800.v1.1.491

Sequence Viewer

Length: 417 bp
ATGGTGGATCTTGAAACTGTTTGCTGCATGTGTGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAAATGCCGCAATCGCTTTCAACACTCGTATTGTAGCAATTATTATAGCGAATATGCGGAGCCAACTGAACTGTGTGATTGGTGCTTAAGTGATCAAGAAAGGAGCACAACAAGGCACGGTAGCTCTTCCAAGAAATCGAGTATGGCGGCCGCAGAAGGAGTCGAGACTGGAGGTGTCTCGAGCCGGTCAGAATACTCTGGGGATCACAAGATTAAGCAACACGATCATAATCAAGAGAGTGGTAGCGGCGAGAAGGTTAACACCAAGAACCACCCTAGCAGTGGCGTGCCGTCACCAAGAACCGCTACGCGCAGGTACAAGCTTCTCAAGGATGTCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

7.56

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 9 - 52 6.2e-24 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccII CGCG 1 cut(s) 382
AciI CCGC 7 cut(s) 64, 79, 128, 218, 222, 318, 375
AclWI GGATC 2 cut(s) 15, 282
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 353
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 14, 92
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 58, 195, 394
AluI AGCT 3 cut(s) 58, 195, 394
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 230, 253
AlwI GGATC 2 cut(s) 15, 282
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 24, 66
AspLEI GCGC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 47, 357
AvaI CYCGRG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 11, 53
BceAI ACGGC 1 cut(s) 346
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 230, 253
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 6 cut(s) 25, 67, 79, 219, 222, 319
BlsI GCNGC 6 cut(s) 26, 68, 80, 220, 223, 320
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 300
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 11, 53
Bsh1236I CGCG 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 230, 253
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 7, 163, 274, 295
BspACI CCGC 7 cut(s) 64, 79, 128, 218, 222, 318, 375
BspANI GGCC 1 cut(s) 221
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 2 cut(s) 15, 282
BspQI GCTCTTC 2 cut(s) 65, 202
BspTI CTTAAG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 4 cut(s) 7, 163, 274, 295
Bst4CI ACNGT 3 cut(s) 19, 144, 191
Bst6I CTCTTC 2 cut(s) 65, 202
BstAFI CTTAAG 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 4 cut(s) 10, 166, 277, 298
BstMAI GTCTC 2 cut(s) 230, 253
BstMBI GATC 4 cut(s) 7, 163, 274, 295
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 75, 84
BstNSI RCATGY 1 cut(s) 31
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 11, 53
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 221
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 359
CciNI GCGGCCGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 255
Csp6I GTAC 1 cut(s) 388
CviAII CATG 2 cut(s) 28, 409
CviJI RGCY 6 cut(s) 58, 133, 195, 221, 255, 394
CviKI_1 RGCY 6 cut(s) 58, 133, 195, 221, 255, 394
CviQI GTAC 1 cut(s) 388
DpnI GATC 4 cut(s) 9, 165, 276, 297
DpnII GATC 4 cut(s) 7, 163, 274, 295
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 65, 202
EarI CTCTTC 2 cut(s) 65, 202
EclXI CGGCCG 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 250
FaeI CATG 2 cut(s) 31, 412
FaiI YATR 6 cut(s) 29, 117, 126, 215, 300, 410
FatI CATG 2 cut(s) 27, 408
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 25, 67, 79, 219, 222, 319
Fsp4HI GCNGC 6 cut(s) 25, 67, 79, 219, 222, 319
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 383
GluI GCNGC 6 cut(s) 25, 67, 79, 219, 222, 319
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 384
Hin1II CATG 2 cut(s) 31, 412
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 231
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 47, 357
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 6 cut(s) 11, 50, 167, 235, 250, 305
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 221, 319
HpyCH4III ACNGT 3 cut(s) 19, 144, 191
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 27, 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 84
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 31, 412
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 7, 163, 274, 295
LguI GCTCTTC 2 cut(s) 65, 202
LmnI GCTCC 2 cut(s) 130, 174
LpnPI CCDG 5 cut(s) 63, 225, 255, 269, 370
Lsp1109I GCAGC 2 cut(s) 11, 53
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 35, 363
MalI GATC 4 cut(s) 9, 165, 276, 297
MboI GATC 4 cut(s) 7, 163, 274, 295
MboII GAAGA 2 cut(s) 52, 189
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 1 cut(s) 236
MseI TTAA 4 cut(s) 158, 285, 330, 415
MspA1I CMGCKG 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 75, 84
NdeII GATC 4 cut(s) 7, 163, 274, 295
NlaIII CATG 2 cut(s) 31, 412
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 35, 363
NotI GCGGCCGC 1 cut(s) 219
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 250
PciSI GCTCTTC 2 cut(s) 65, 202
PkrI GCNGC 6 cut(s) 26, 68, 80, 220, 223, 320
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SapI GCTCTTC 2 cut(s) 65, 202
SaqAI TTAA 4 cut(s) 158, 285, 330, 415
SatI GCNGC 6 cut(s) 25, 67, 79, 219, 222, 319
Sau3AI GATC 4 cut(s) 7, 163, 274, 295
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 42, 60, 197, 247, 330, 389, 396
Sfr274I CTCGAG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 157, 250, 398
SmoI CTYRAG 3 cut(s) 157, 250, 398
Sse9I AATT 1 cut(s) 109
SsiI CCGC 7 cut(s) 64, 79, 128, 218, 222, 318, 375
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 19, 144, 191
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 209, 234, 251
TasI AATT 1 cut(s) 109
TauI GCSGC 4 cut(s) 81, 221, 224, 321
Tru1I TTAA 4 cut(s) 158, 285, 330, 415
Tru9I TTAA 4 cut(s) 158, 285, 330, 415
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 35, 363
TseI GCWGC 2 cut(s) 24, 66
Tsp45I GTSAC 2 cut(s) 35, 363
TspRI CASTG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 157
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 250
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.