RLG00000028633

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010936
Physical Location & Seq
Forward (+)
25424177 .. 25425527
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028633

Sequence Viewer

Length: 429 bp
ATGGTGGATCGTCTTCAAAGCGTTTGCTGCATGTGCGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAAATGCCGCAACCGCTTTCAACACTCGTATTGCAGCAACTACTATAGTGAATACGCGGAGCCGATTGAGCTATGCGACTGGTGCCGAAGTGAAGAGACGAGCACGACTAGGCACGGCAGTGGCAGCTCTTCTAAGAAATCGGCAGCTTCTGCGAGCCGGTCGGAGTATTCCGGGGACAAGATCAAGCAACACGATCATCATCAACCCCGTGATCAAGAGATGGGTGGTAGCGGAGAGAAAGCGGCCGCCGGTAAGAACAGTAGCAGCCCTGGGCCGTCCCCGAGAACCGCTACACGCAGGATTTGTCGCGTCTGTCTGTTACAGCAGAGACTTACACCCTCATTGCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

8.8

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 10 - 53 3.6e-24 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 2 cut(s) 131, 384
AciI CCGC 9 cut(s) 36, 67, 82, 88, 131, 306, 317, 321, 363
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 318
AgsI TTSAA 2 cut(s) 17, 95
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 4 cut(s) 61, 145, 201, 221
AluI AGCT 4 cut(s) 61, 145, 201, 221
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 164, 397
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 2 cut(s) 318, 347
ApeKI GCWGC 6 cut(s) 27, 69, 108, 198, 218, 339
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 355
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 6 cut(s) 14, 56, 120, 210, 230, 351
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 205, 334
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 164, 397
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 118
BisI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
BlsI GCNGC 9 cut(s) 29, 71, 83, 110, 200, 220, 319, 322, 341
Bme1390I CCNGG 2 cut(s) 247, 345
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 135, 158
BmrFI CCNGG 2 cut(s) 247, 345
BpiI GAAGAC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 246, 343, 344
Bse118I RCCGGY 2 cut(s) 231, 323
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 3 cut(s) 246, 343, 344
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 6 cut(s) 14, 56, 120, 210, 230, 351
Bsh1236I CGCG 2 cut(s) 131, 384
Bsh1285I CGRYCG 2 cut(s) 236, 321
BshFI GGCC 2 cut(s) 320, 349
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 2 cut(s) 236, 321
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 232, 246, 324
BslFI GGGAC 2 cut(s) 263, 337
BsmAI GTCTC 2 cut(s) 164, 397
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 263, 337
BsnI GGCC 2 cut(s) 320, 349
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 7, 255, 268, 286
BspACI CCGC 9 cut(s) 36, 67, 82, 88, 131, 306, 317, 321, 363
BspANI GGCC 2 cut(s) 320, 349
BspFNI CGCG 2 cut(s) 131, 384
BspLI GGNNCC 2 cut(s) 135, 158
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 2 cut(s) 68, 208
BspT107I GGYRCC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 2 cut(s) 231, 323
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 2 cut(s) 231, 323
BssECI CCNNGG 3 cut(s) 246, 343, 344
BssMI GATC 4 cut(s) 7, 255, 268, 286
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 3 cut(s) 68, 162, 208
BstAPI GCANNNNNTGC 2 cut(s) 78, 224
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 131, 384
BstKTI GATC 4 cut(s) 10, 258, 271, 289
BstMAI GTCTC 2 cut(s) 164, 397
BstMBI GATC 4 cut(s) 7, 255, 268, 286
BstMCI CGRYCG 2 cut(s) 236, 321
BstMWI GCNNNNNNNGC 8 cut(s) 27, 33, 78, 87, 142, 156, 198, 224
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 245, 343
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 2 cut(s) 131, 384
BstV1I GCAGC 6 cut(s) 14, 56, 120, 210, 230, 351
BstV2I GAAGAC 1 cut(s) 5
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 320, 349
BtrI CACGTC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 224
CciNI GCGGCCGC 1 cut(s) 318
Cfr10I RCCGGY 2 cut(s) 231, 323
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 1 cut(s) 373
CviAII CATG 1 cut(s) 31
CviJI RGCY 9 cut(s) 61, 136, 145, 201, 221, 231, 320, 342, 349
CviKI_1 RGCY 9 cut(s) 61, 136, 145, 201, 221, 231, 320, 342, 349
DdeI CTNAG 1 cut(s) 207
DpnI GATC 4 cut(s) 9, 257, 270, 288
DpnII GATC 4 cut(s) 7, 255, 268, 286
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 3 cut(s) 68, 162, 208
EarI CTCTTC 3 cut(s) 68, 162, 208
EclXI CGGCCG 1 cut(s) 318
Eco52I CGGCCG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 120, 148
FaqI GGGAC 2 cut(s) 263, 337
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
Fsp4HI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
FspBI CTAG 1 cut(s) 183
GluI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
HaeIII GGCC 2 cut(s) 320, 349
HapII CCGG 3 cut(s) 232, 246, 324
HgaI GACGC 1 cut(s) 373
Hin1II CATG 1 cut(s) 34
HpaII CCGG 3 cut(s) 232, 246, 324
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 53, 290
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 30, 72, 108
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 33, 78, 87, 142, 156, 198, 224
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 7, 255, 268, 286
LguI GCTCTTC 2 cut(s) 68, 208
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 66, 139, 245, 259, 330, 337, 357, 358
Lsp1109I GCAGC 6 cut(s) 14, 56, 120, 210, 230, 351
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 38, 393
MalI GATC 4 cut(s) 9, 257, 270, 288
MboI GATC 4 cut(s) 7, 255, 268, 286
MboII GAAGA 4 cut(s) 5, 55, 179, 195
MhlI GDGCHC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 232, 246, 324
MspR9I CCNGG 2 cut(s) 247, 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 2 cut(s) 131, 384
MwoI GCNNNNNNNGC 8 cut(s) 27, 33, 78, 87, 142, 156, 198, 224
NciI CCSGG 1 cut(s) 247
NdeII GATC 4 cut(s) 7, 255, 268, 286
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 135, 158
NmuCI GTSAC 1 cut(s) 38
NotI GCGGCCGC 1 cut(s) 318
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 344
PciSI GCTCTTC 2 cut(s) 68, 208
PkrI GCNGC 9 cut(s) 29, 71, 83, 110, 200, 220, 319, 322, 341
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 135, 158
PspPI GGNCC 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 2 cut(s) 68, 208
SatI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
Sau3AI GATC 4 cut(s) 7, 255, 268, 286
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 247, 345
SduI GDGCHC 1 cut(s) 179
SetI ASST 5 cut(s) 45, 63, 147, 203, 223
SfcI CTRYAG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 192
SsiI CCGC 9 cut(s) 36, 67, 82, 88, 131, 306, 317, 321, 363
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 245, 343
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 45
TauI GCSGC 3 cut(s) 84, 320, 323
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 6 cut(s) 27, 69, 108, 198, 218, 339
Tsp45I GTSAC 1 cut(s) 38
TspRI CASTG 1 cut(s) 199
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.