Prupe.2G135200_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010936
Physical Location & Seq
Reverse (-)
19289933 .. 19292019
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G135200.1

Sequence Viewer

Length: 423 bp
ATGGTGGATCTTCAAACTGTCTGCTGCATGTGTGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAAATGCCGCAACCGCTTTCAACACTCGTATTGTAGTAACTTTTATAGTGAGTACGCGGAGCCAATTGAACTGTGCGATTGGTGCCGAAGTGATCAAGAGAGGAGCACCGCAAGGCACGGTGGCTCTTCCAAGAAATCGAGCGTGGTTGGGGGAGTTGAGACCGGAGGCGCTTCGAGCAGGTCCGAATATTCCGGTGACCACAAGATCAAGCAACACGATCATCAACAACACCGTGATCATCAAGACGGTGGCGGCAGCGGCAGCGGGGAGAAGGCTAGTAAGAACAGCGGCGTGCCGTCACCAAGACCCACAGCTCGAAGGTACAAGCTTCTCAAGGATGTAATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.55

Weight (kDa)

8.58

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 153
AccII CGCG 1 cut(s) 128
AciI CCGC 9 cut(s) 64, 79, 85, 128, 180, 324, 330, 336, 360
AclWI GGATC 1 cut(s) 15
AfaI GTAC 2 cut(s) 125, 395
AgsI TTSAA 3 cut(s) 14, 92, 140
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 58, 386, 400
AluI AGCT 3 cut(s) 58, 386, 400
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 4 cut(s) 24, 66, 327, 333
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 3 cut(s) 47, 278, 363
AvaII GGWCC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 11, 53, 339, 345
BceAI ACGGC 1 cut(s) 352
BclI TGATCA 2 cut(s) 163, 307
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 8 cut(s) 25, 67, 79, 325, 328, 331, 334, 361
BlsI GCNGC 8 cut(s) 26, 68, 80, 326, 329, 332, 335, 362
Bme18I GGWCC 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 132, 155
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 233, 263
BseGI GGATG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 4 cut(s) 11, 53, 339, 345
Bsh1236I CGCG 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 234, 264
BsmAI GTCTC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 5 cut(s) 7, 163, 276, 289, 307
BspACI CCGC 9 cut(s) 64, 79, 85, 128, 180, 324, 330, 336, 360
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 132, 155
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 2 cut(s) 65, 202
BspT107I GGYRCC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 224
BssMI GATC 5 cut(s) 7, 163, 276, 289, 307
Bst4CI ACNGT 5 cut(s) 19, 144, 191, 305, 320
Bst6I CTCTTC 2 cut(s) 65, 202
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 365
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 5 cut(s) 10, 166, 279, 292, 310
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 5 cut(s) 7, 163, 276, 289, 307
BstMWI GCNNNNNNNGC 6 cut(s) 75, 84, 153, 246, 330, 333
BstNSI RCATGY 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 266
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 4 cut(s) 11, 53, 339, 345
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 365
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 124, 394
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 58, 133, 195, 347, 386, 400
CviKI_1 RGCY 6 cut(s) 58, 133, 195, 347, 386, 400
CviQI GTAC 2 cut(s) 124, 394
DpnI GATC 5 cut(s) 9, 165, 278, 291, 309
DpnII GATC 5 cut(s) 7, 163, 276, 289, 307
Eam1104I CTCTTC 2 cut(s) 65, 202
EarI CTCTTC 2 cut(s) 65, 202
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 117
FatI CATG 1 cut(s) 27
FauI CCCGC 1 cut(s) 329
FbaI TGATCA 2 cut(s) 163, 307
Fnu4HI GCNGC 8 cut(s) 25, 67, 79, 325, 328, 331, 334, 361
Fsp4HI GCNGC 8 cut(s) 25, 67, 79, 325, 328, 331, 334, 361
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 241
GluI GCNGC 8 cut(s) 25, 67, 79, 325, 328, 331, 334, 361
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 2 cut(s) 234, 264
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 398
HpaII CCGG 2 cut(s) 234, 264
HphI GGTGA 3 cut(s) 47, 278, 363
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 50, 167, 314
HpyAV CCTTC 2 cut(s) 337, 384
HpyCH4III ACNGT 5 cut(s) 19, 144, 191, 305, 320
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 27, 69
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 84, 153, 246, 330, 333
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 2 cut(s) 163, 307
Kzo9I GATC 5 cut(s) 7, 163, 276, 289, 307
LguI GCTCTTC 2 cut(s) 65, 202
LmnI GCTCC 2 cut(s) 130, 174
LpnPI CCDG 4 cut(s) 63, 235, 247, 277
Lsp1109I GCAGC 4 cut(s) 11, 53, 339, 345
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 4 cut(s) 35, 107, 266, 369
MalI GATC 5 cut(s) 9, 165, 278, 291, 309
MboI GATC 5 cut(s) 7, 163, 276, 289, 307
MboII GAAGA 2 cut(s) 52, 189
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 135
MnlI CCTC 2 cut(s) 165, 230
MseI TTAA 1 cut(s) 421
MspA1I CMGCKG 4 cut(s) 66, 330, 336, 360
MspI CCGG 2 cut(s) 234, 264
MunI CAATTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 75, 84, 153, 246, 330, 333
NdeII GATC 5 cut(s) 7, 163, 276, 289, 307
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 132, 155
NmuCI GTSAC 3 cut(s) 35, 266, 369
NspI RCATGY 1 cut(s) 31
PciSI GCTCTTC 2 cut(s) 65, 202
PkrI GCNGC 8 cut(s) 26, 68, 80, 326, 329, 332, 335, 362
PspEI GGTNACC 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 132, 155
PspPI GGNCC 1 cut(s) 252
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 125, 395
RsaNI GTAC 2 cut(s) 124, 394
SapI GCTCTTC 2 cut(s) 65, 202
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 8 cut(s) 25, 67, 79, 325, 328, 331, 334, 361
Sau3AI GATC 5 cut(s) 7, 163, 276, 289, 307
Sau96I GGNCC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 179
SetI ASST 6 cut(s) 42, 60, 254, 388, 395, 402
SinI GGWCC 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 1 cut(s) 135
SsiI CCGC 9 cut(s) 64, 79, 85, 128, 180, 324, 330, 336, 360
SspI AATATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 5 cut(s) 19, 144, 191, 305, 320
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 209, 245, 388
TasI AATT 1 cut(s) 135
TauI GCSGC 4 cut(s) 81, 327, 333, 363
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TseFI GTSAC 3 cut(s) 35, 266, 369
TseI GCWGC 4 cut(s) 24, 66, 327, 333
Tsp45I GTSAC 3 cut(s) 35, 266, 369
VpaK11BI GGWCC 1 cut(s) 252
XceI RCATGY 1 cut(s) 31
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.