Rh1DG210100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010936
Physical Location & Seq
Reverse (-)
40928390 .. 40931004
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG210100.1

Sequence Viewer

Length: 405 bp
ATGGTGGATCGTCTTCAAAGCGTTTGCTGCATGTGCGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAAATGCCGCAACCGCTTTCAACACTCGTATTGCAGCAACTACTATAGTGAATACGCGGAGCCGATTGAGCTATGCGACTGGTGCCGAAGTGAAGAAACAAGCACGACTAGGCACGGCGGTGGCAACTCTTCTAAGAAATCGGCAGCTTCTGCGAGCCGGTCGGAGTATTCCGGGGACAAGATCAAGCAACACGATCATCATCAACCCCGTGATCAAGAGATGGGTGGTAGCGGAGAGAAAGCGACCGCCGGTAAGAACAGTAGCAGCCCTGGGCCGTCCCCGAGAACCGCTACTCGCAGGTACAAGCTTCTCAAGGATGTAATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

8.74

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 10 - 53 3.2e-24 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 1 cut(s) 131
AciI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 321, 363
AclWI GGATC 1 cut(s) 15
AfaI GTAC 1 cut(s) 377
AgsI TTSAA 2 cut(s) 17, 95
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 4 cut(s) 61, 145, 221, 382
AluI AGCT 4 cut(s) 61, 145, 221, 382
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 27, 69, 108, 218, 339
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 355
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 5 cut(s) 14, 56, 120, 230, 351
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 205, 334
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 363
BisI GCNGC 6 cut(s) 28, 70, 82, 109, 219, 340
BlsI GCNGC 6 cut(s) 29, 71, 83, 110, 220, 341
Bme1390I CCNGG 2 cut(s) 247, 345
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 135, 158
BmrFI CCNGG 2 cut(s) 247, 345
BpiI GAAGAC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 246, 343, 344
Bse118I RCCGGY 2 cut(s) 231, 323
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 3 cut(s) 246, 343, 344
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 273
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 5 cut(s) 14, 56, 120, 230, 351
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 236, 321
BshFI GGCC 1 cut(s) 349
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 2 cut(s) 236, 321
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 232, 246, 324
BslFI GGGAC 2 cut(s) 263, 337
BsmFI GGGAC 2 cut(s) 263, 337
BsnI GGCC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 355
Bsp143I GATC 4 cut(s) 7, 255, 268, 286
BspACI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 321, 363
BspANI GGCC 1 cut(s) 349
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 135, 158
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 156
BsrFI RCCGGY 2 cut(s) 231, 323
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 2 cut(s) 231, 323
BssECI CCNNGG 3 cut(s) 246, 343, 344
BssMI GATC 4 cut(s) 7, 255, 268, 286
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 68, 208
BstAPI GCANNNNNTGC 2 cut(s) 78, 224
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 4 cut(s) 10, 258, 271, 289
BstMBI GATC 4 cut(s) 7, 255, 268, 286
BstMCI CGRYCG 2 cut(s) 236, 321
BstMWI GCNNNNNNNGC 7 cut(s) 27, 33, 78, 87, 142, 156, 224
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 245, 343
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 5 cut(s) 14, 56, 120, 230, 351
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 349
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 231, 323
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 31
CviJI RGCY 8 cut(s) 61, 136, 145, 221, 231, 342, 349, 382
CviKI_1 RGCY 8 cut(s) 61, 136, 145, 221, 231, 342, 349, 382
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 1 cut(s) 207
DpnI GATC 4 cut(s) 9, 257, 270, 288
DpnII GATC 4 cut(s) 7, 255, 268, 286
Eam1104I CTCTTC 2 cut(s) 68, 208
EarI CTCTTC 2 cut(s) 68, 208
Eco88I CYCGRG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 120, 148
FaqI GGGAC 2 cut(s) 263, 337
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 6 cut(s) 28, 70, 82, 109, 219, 340
Fsp4HI GCNGC 6 cut(s) 28, 70, 82, 109, 219, 340
FspBI CTAG 1 cut(s) 183
GluI GCNGC 6 cut(s) 28, 70, 82, 109, 219, 340
HaeIII GGCC 1 cut(s) 349
HapII CCGG 3 cut(s) 232, 246, 324
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 380
HpaII CCGG 3 cut(s) 232, 246, 324
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 53, 290
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 30, 72, 108
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 33, 78, 87, 142, 156, 224
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 7, 255, 268, 286
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 66, 139, 245, 259, 330, 337, 357, 358
Lsp1109I GCAGC 5 cut(s) 14, 56, 120, 230, 351
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 38
MalI GATC 4 cut(s) 9, 257, 270, 288
MboI GATC 4 cut(s) 7, 255, 268, 286
MboII GAAGA 4 cut(s) 5, 55, 179, 195
MmeI TCCRAC 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 232, 246, 324
MspR9I CCNGG 2 cut(s) 247, 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 7 cut(s) 27, 33, 78, 87, 142, 156, 224
NciI CCSGG 1 cut(s) 247
NdeII GATC 4 cut(s) 7, 255, 268, 286
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 135, 158
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 68
PkrI GCNGC 6 cut(s) 29, 71, 83, 110, 220, 341
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 135, 158
PspPI GGNCC 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 68
SatI GCNGC 6 cut(s) 28, 70, 82, 109, 219, 340
Sau3AI GATC 4 cut(s) 7, 255, 268, 286
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 247, 345
SetI ASST 6 cut(s) 45, 63, 147, 223, 377, 384
SfcI CTRYAG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SsiI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 321, 363
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 245, 343
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 45
TauI GCSGC 1 cut(s) 84
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 5 cut(s) 27, 69, 108, 218, 339
Tsp45I GTSAC 1 cut(s) 38
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.