FvH4_7g10710

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010936
Physical Location & Seq
Reverse (-)
10043133 .. 10044499
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10710.t2

Sequence Viewer

Length: 405 bp
ATGGTGGATCGTCTTCAAAGTGTTTGCTGCATGTGCGGTGACGTGGGTTTTCCAGACAAGCTCTTCCGCTGCAACAAATGCCGCAACCGCTTTCAACACTCGTATTGCAGCAATTACTATGGTGAATACGCGGAACCGATCGAGCTATGCGACTGGTGCCGAAGTGAAGAGACGAGCACGACGAGGCACGGCGGTGGCAGCTCTTCAAAGAAATCGGCAGCTTCTGCAAGCCGGTCGGAGTATTCGGGGGACAAGATCAAGCAACACGATCATCATCAGCCTTGTGATCAAGAGATGGGTGGTAGCGGAGAGAAGGCGGCAGCCGGTAAGAACCATAGCAGCCCTGTGCCGTCTCCGAGAACCGCTACTCGCAGGTACAAGCTTCTCAAGGATGTAATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

8.53

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 10 - 50 5.3e-19 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 1 cut(s) 131
AciI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 317, 363
AclWI GGATC 1 cut(s) 15
AfaI GTAC 1 cut(s) 377
AgsI TTSAA 3 cut(s) 17, 95, 207
AjiI CACGTC 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 5 cut(s) 61, 145, 201, 221, 382
AluI AGCT 5 cut(s) 61, 145, 201, 221, 382
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 164, 357
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 224
ApeKI GCWGC 7 cut(s) 27, 69, 108, 198, 218, 320, 339
AsuHPI GGTGA 2 cut(s) 50, 134
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 7 cut(s) 14, 56, 120, 210, 230, 332, 351
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 205, 334
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 164, 357
BfuAI ACCTGC 1 cut(s) 363
BisI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
BlsI GCNGC 9 cut(s) 29, 71, 83, 110, 200, 220, 319, 322, 341
BmgBI CACGTC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 135, 158
BpiI GAAGAC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 273
Bse118I RCCGGY 2 cut(s) 231, 323
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 273
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 7 cut(s) 14, 56, 120, 210, 230, 332, 351
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 141, 236
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 2 cut(s) 141, 236
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 232, 324
BslFI GGGAC 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 164, 357
BsmBI CGTCTC 2 cut(s) 164, 357
BsmFI GGGAC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 5 cut(s) 7, 138, 255, 268, 286
BspACI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 317, 363
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 135, 158
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 2 cut(s) 68, 208
BspT107I GGYRCC 1 cut(s) 156
BsrFI RCCGGY 2 cut(s) 231, 323
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 2 cut(s) 231, 323
BssMI GATC 5 cut(s) 7, 138, 255, 268, 286
Bst6I CTCTTC 3 cut(s) 68, 162, 208
BstAPI GCANNNNNTGC 2 cut(s) 78, 224
BstC8I GCNNGC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 5 cut(s) 10, 141, 258, 271, 289
BstMAI GTCTC 2 cut(s) 164, 357
BstMBI GATC 5 cut(s) 7, 138, 255, 268, 286
BstMCI CGRYCG 2 cut(s) 141, 236
BstMWI GCNNNNNNNGC 6 cut(s) 33, 78, 87, 156, 198, 224
BstNSI RCATGY 1 cut(s) 34
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 7 cut(s) 14, 56, 120, 210, 230, 332, 351
BstV2I GAAGAC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 231, 323
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 31
CviJI RGCY 9 cut(s) 61, 145, 201, 221, 231, 280, 323, 342, 382
CviKI_1 RGCY 9 cut(s) 61, 145, 201, 221, 231, 280, 323, 342, 382
CviQI GTAC 1 cut(s) 376
DpnI GATC 5 cut(s) 9, 140, 257, 270, 288
DpnII GATC 5 cut(s) 7, 138, 255, 268, 286
Eam1104I CTCTTC 3 cut(s) 68, 162, 208
EarI CTCTTC 3 cut(s) 68, 162, 208
Esp3I CGTCTC 2 cut(s) 164, 357
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 120, 148, 336
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
Fsp4HI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
GluI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
HapII CCGG 2 cut(s) 232, 324
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 380
HpaII CCGG 2 cut(s) 232, 324
HphI GGTGA 2 cut(s) 50, 134
Hpy188I TCNGA 2 cut(s) 238, 357
Hpy188III TCNNGA 2 cut(s) 53, 290
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 30, 72, 108, 227
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 78, 87, 156, 198, 224
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 5 cut(s) 7, 138, 255, 268, 286
LguI GCTCTTC 2 cut(s) 68, 208
LpnPI CCDG 6 cut(s) 66, 139, 245, 337, 357, 358
Lsp1109I GCAGC 7 cut(s) 14, 56, 120, 210, 230, 332, 351
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 38
MalI GATC 5 cut(s) 9, 140, 257, 270, 288
MboI GATC 5 cut(s) 7, 138, 255, 268, 286
MboII GAAGA 4 cut(s) 5, 55, 179, 195
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 2 cut(s) 232, 324
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 6 cut(s) 33, 78, 87, 156, 198, 224
NdeII GATC 5 cut(s) 7, 138, 255, 268, 286
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 135, 158
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 192
PciSI GCTCTTC 2 cut(s) 68, 208
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 179
PkrI GCNGC 9 cut(s) 29, 71, 83, 110, 200, 220, 319, 322, 341
Ple19I CGATCG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 135, 158
PstNI CAGNNNCTG 1 cut(s) 224
PvuI CGATCG 1 cut(s) 141
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 2 cut(s) 68, 208
SatI GCNGC 9 cut(s) 28, 70, 82, 109, 199, 219, 318, 321, 340
Sau3AI GATC 5 cut(s) 7, 138, 255, 268, 286
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 45, 63, 147, 203, 223, 377, 384
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 112
SsiI CCGC 9 cut(s) 36, 67, 82, 88, 131, 192, 306, 317, 363
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 112
TauI GCSGC 2 cut(s) 84, 320
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 7 cut(s) 27, 69, 108, 198, 218, 320, 339
Tsp45I GTSAC 1 cut(s) 38
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.