MD00G1166100.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0010936
Physical Location & Seq
Reverse (-)
37978281 .. 37979600
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1166100.v1.1.491

Sequence Viewer

Length: 408 bp
ATGGTGGATCTTCAAACTGTTTGCTGCATGTGTGGTGACCTGGGTTTTCCTGACAAACTCTTCCGCTGCAACAAATGCCGCGATCGCTTTCAACACTCTAACTATTATAGAGAGTATGCGGAGCCAATTGAACTGTGCGATTGGTGCCGAAGTGATCAAGAGAGGAGCACAACAAGGCACGGCAGCTCTTCCAAGAAATCAAGCATGGTGGCCGGAGGAGGAGTCGAGACTGGAGGTGCCTCGAGCCGGTCAGAATACTCCGGGGATCACAAGATCAAGCAACACGATCATCAACAAGAAAGTGGTAGCGGCGAGAAGGCTAACACCAAGAACCACCCTAGCAGCAGCGCGCCATCACCAAGAACCACTACGCGCAGGTACAAGCTTCTCAAGGATGTCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

8.63

Isoelectric Point (pI)

61.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 9 - 49 2.5e-18 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 2 cut(s) 144, 236
AccII CGCG 3 cut(s) 81, 350, 373
AciI CCGC 4 cut(s) 64, 79, 119, 309
AclWI GGATC 2 cut(s) 15, 273
AcoI YGGCCR 1 cut(s) 210
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 3 cut(s) 14, 92, 131
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 186, 385
AluI AGCT 2 cut(s) 186, 385
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 2 cut(s) 15, 273
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 5 cut(s) 24, 66, 183, 342, 345
AsiSI GCGATCGC 1 cut(s) 85
AspLEI GCGC 3 cut(s) 350, 352, 375
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 47, 348
AvaI CYCGRG 1 cut(s) 241
BanI GGYRCC 2 cut(s) 144, 236
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 5 cut(s) 11, 53, 195, 354, 357
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 7 cut(s) 25, 67, 79, 184, 310, 343, 346
BlsI GCNGC 7 cut(s) 26, 68, 80, 185, 311, 344, 347
Bme1390I CCNGG 2 cut(s) 41, 262
BmeT110I CYCGRG 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 123, 146, 238
BmrFI CCNGG 2 cut(s) 41, 262
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 40, 261
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 40, 261
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 235
BsePI GCGCGC 1 cut(s) 348
BseRI GAGGAG 3 cut(s) 178, 231, 234
BseXI GCAGC 5 cut(s) 11, 53, 195, 354, 357
Bsh1236I CGCG 3 cut(s) 81, 350, 373
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 2 cut(s) 144, 236
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 213, 247, 261
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 6 cut(s) 7, 82, 154, 265, 273, 286
BspACI CCGC 4 cut(s) 64, 79, 119, 309
BspANI GGCC 1 cut(s) 212
BspFNI CGCG 3 cut(s) 81, 350, 373
BspLI GGNNCC 3 cut(s) 123, 146, 238
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 2 cut(s) 15, 273
BspQI GCTCTTC 1 cut(s) 193
BspT107I GGYRCC 2 cut(s) 144, 236
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 40, 261
BssHII GCGCGC 1 cut(s) 348
BssMI GATC 6 cut(s) 7, 82, 154, 265, 273, 286
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 19, 135
Bst6I CTCTTC 2 cut(s) 65, 193
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 350
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 3 cut(s) 81, 350, 373
BstHHI GCGC 3 cut(s) 350, 352, 375
BstKTI GATC 6 cut(s) 10, 85, 157, 268, 276, 289
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 6 cut(s) 7, 82, 154, 265, 273, 286
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 75, 84, 144
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 39, 260
BstUI CGCG 3 cut(s) 81, 350, 373
BstV1I GCAGC 5 cut(s) 11, 53, 195, 354, 357
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 400
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 3 cut(s) 350, 352, 375
Cfr10I RCCGGY 1 cut(s) 246
Csp6I GTAC 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 3 cut(s) 28, 205, 400
CviJI RGCY 6 cut(s) 124, 186, 212, 246, 320, 385
CviKI_1 RGCY 6 cut(s) 124, 186, 212, 246, 320, 385
CviQI GTAC 1 cut(s) 379
DpnI GATC 6 cut(s) 9, 84, 156, 267, 275, 288
DpnII GATC 6 cut(s) 7, 82, 154, 265, 273, 286
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 65, 193
EarI CTCTTC 2 cut(s) 65, 193
Eco88I CYCGRG 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 31, 208, 403
FaiI YATR 5 cut(s) 29, 108, 117, 206, 401
FatI CATG 3 cut(s) 27, 204, 399
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 7 cut(s) 25, 67, 79, 184, 310, 343, 346
Fsp4HI GCNGC 7 cut(s) 25, 67, 79, 184, 310, 343, 346
FspBI CTAG 1 cut(s) 339
GlaI GCGC 3 cut(s) 349, 351, 374
GluI GCNGC 7 cut(s) 25, 67, 79, 184, 310, 343, 346
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 212
HapII CCGG 3 cut(s) 213, 247, 261
HhaI GCGC 3 cut(s) 350, 352, 375
Hin1II CATG 3 cut(s) 31, 208, 403
Hin6I GCGC 3 cut(s) 348, 350, 373
HinP1I GCGC 3 cut(s) 348, 350, 373
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 1 cut(s) 222
HpaII CCGG 3 cut(s) 213, 247, 261
HphI GGTGA 2 cut(s) 47, 348
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 50, 158, 226
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 19, 135
HpyCH4V TGCA 2 cut(s) 27, 69
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 84, 144
Hsp92II CATG 3 cut(s) 31, 208, 403
HspAI GCGC 3 cut(s) 348, 350, 373
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 6 cut(s) 7, 82, 154, 265, 273, 286
LguI GCTCTTC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 121, 165
LpnPI CCDG 8 cut(s) 26, 53, 63, 216, 226, 260, 274, 361
Lsp1109I GCAGC 5 cut(s) 11, 53, 195, 354, 357
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 35
MalI GATC 6 cut(s) 9, 84, 156, 267, 275, 288
MboI GATC 6 cut(s) 7, 82, 154, 265, 273, 286
MboII GAAGA 2 cut(s) 52, 180
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 5 cut(s) 156, 209, 212, 227, 250
MseI TTAA 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 3 cut(s) 213, 247, 261
MspR9I CCNGG 2 cut(s) 41, 262
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 3 cut(s) 81, 350, 373
MwoI GCNNNNNNNGC 3 cut(s) 75, 84, 144
NciI CCSGG 1 cut(s) 262
NdeII GATC 6 cut(s) 7, 82, 154, 265, 273, 286
NlaIII CATG 3 cut(s) 31, 208, 403
NlaIV GGNNCC 3 cut(s) 123, 146, 238
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 241
PauI GCGCGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 193
PkrI GCNGC 7 cut(s) 26, 68, 80, 185, 311, 344, 347
Ple19I CGATCG 1 cut(s) 85
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 39
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 123, 146, 238
PspXI VCTCGAGB 1 cut(s) 241
PsuI RGATCY 1 cut(s) 7
PteI GCGCGC 1 cut(s) 348
PvuI CGATCG 1 cut(s) 85
RgaI GCGATCGC 1 cut(s) 85
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 7 cut(s) 25, 67, 79, 184, 310, 343, 346
Sau3AI GATC 6 cut(s) 7, 82, 154, 265, 273, 286
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 41, 262
SduI GDGCHC 1 cut(s) 170
SetI ASST 5 cut(s) 42, 188, 238, 380, 387
SfaAI GCGATCGC 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 241
SgfI GCGATCGC 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 241
SmlI CTYRAG 2 cut(s) 241, 389
SmoI CTYRAG 2 cut(s) 241, 389
Sse9I AATT 1 cut(s) 126
SsiI CCGC 4 cut(s) 64, 79, 119, 309
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 39, 260
TaaI ACNGT 2 cut(s) 19, 135
TaqI TCGA 2 cut(s) 225, 242
TasI AATT 1 cut(s) 126
TauI GCSGC 2 cut(s) 81, 312
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 5 cut(s) 24, 66, 183, 342, 345
Tsp45I GTSAC 1 cut(s) 35
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 241
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.