pycom11g20210

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010936
Physical Location & Seq
Reverse (-)
22992753 .. 22993759
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20210.1

Sequence Viewer

Length: 417 bp
ATGGTAGATCTTCAAACTGTTTGCTGCATGTGTGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAATTGCCGCGATCGCTTTCAACACTCGTATTGTAGTAACTATTATAGAGAGTACGCAGAGCCAATTGAACTGTGCGATTGGTGCCGAAGTGATCAAGAGAGGAGCACAACAAGGCACGGTAGCTCTTCCAAGAAATCAAGCATGGTGACCAGAGGAGGAATCGAGACTGGAGGTGCCTCGAGCCGGTCAGAATACTCCGGGGATCACAAGATCAAGCAACACGATCATCAACAAGAAGGTGGTAGCAGCGAGAAGGCTAACACCAAGAACCACCCTAGCAGCGGCACGCCATCACCAAGAACCACTACGCGCAGGTACAAGCTTCTCAAGGATGTCATGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.7

Weight (kDa)

8.63

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 9 - 52 1.7e-23 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 2 cut(s) 153, 245
AccII CGCG 2 cut(s) 81, 382
AciI CCGC 3 cut(s) 64, 79, 354
AclWI GGATC 1 cut(s) 282
AfaI GTAC 2 cut(s) 125, 389
AfiI CCNNNNNNNGG 2 cut(s) 255, 353
AgsI TTSAA 3 cut(s) 14, 92, 140
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 58, 195, 394
AluI AGCT 3 cut(s) 58, 195, 394
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 250
ApeKI GCWGC 4 cut(s) 24, 66, 318, 351
AsiSI GCGATCGC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 47, 229, 357
AvaI CYCGRG 1 cut(s) 250
BanI GGYRCC 2 cut(s) 153, 245
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 11, 53, 330, 363
BccI CCATC 1 cut(s) 370
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 375
BglII AGATCT 1 cut(s) 7
BisI GCNGC 6 cut(s) 25, 67, 79, 319, 352, 355
BlsI GCNGC 6 cut(s) 26, 68, 80, 320, 353, 356
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 155, 247
BmrFI CCNGG 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 353
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 255, 353
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 187, 240
BseXI GCAGC 4 cut(s) 11, 53, 330, 363
Bsh1236I CGCG 2 cut(s) 81, 382
Bsh1285I CGRYCG 1 cut(s) 85
BshNI GGYRCC 2 cut(s) 153, 245
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 2 cut(s) 256, 270
BslI CCNNNNNNNGG 2 cut(s) 255, 353
BsmAI GTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 6 cut(s) 7, 82, 163, 274, 282, 295
BspACI CCGC 3 cut(s) 64, 79, 354
BspFNI CGCG 2 cut(s) 81, 382
BspLI GGNNCC 2 cut(s) 155, 247
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 282
BspQI GCTCTTC 2 cut(s) 65, 202
BspT107I GGYRCC 2 cut(s) 153, 245
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 6 cut(s) 7, 82, 163, 274, 282, 295
Bst4CI ACNGT 3 cut(s) 19, 144, 191
Bst6I CTCTTC 2 cut(s) 65, 202
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 2 cut(s) 81, 382
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 6 cut(s) 10, 85, 166, 277, 285, 298
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 6 cut(s) 7, 82, 163, 274, 282, 295
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 75, 84, 153
BstNSI RCATGY 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 269
BstUI CGCG 2 cut(s) 81, 382
BstV1I GCAGC 4 cut(s) 11, 53, 330, 363
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 359
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 255
Csp6I GTAC 2 cut(s) 124, 388
CviAII CATG 3 cut(s) 28, 214, 409
CviJI RGCY 6 cut(s) 58, 133, 195, 255, 329, 394
CviKI_1 RGCY 6 cut(s) 58, 133, 195, 255, 329, 394
CviQI GTAC 2 cut(s) 124, 388
DpnI GATC 6 cut(s) 9, 84, 165, 276, 284, 297
DpnII GATC 6 cut(s) 7, 82, 163, 274, 282, 295
Eam1104I CTCTTC 2 cut(s) 65, 202
EarI CTCTTC 2 cut(s) 65, 202
Eco88I CYCGRG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
FaeI CATG 3 cut(s) 31, 217, 412
FaiI YATR 4 cut(s) 29, 117, 215, 410
FatI CATG 3 cut(s) 27, 213, 408
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 25, 67, 79, 319, 352, 355
Fsp4HI GCNGC 6 cut(s) 25, 67, 79, 319, 352, 355
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 383
GluI GCNGC 6 cut(s) 25, 67, 79, 319, 352, 355
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 2 cut(s) 256, 270
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 31, 217, 412
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 231
HpaII CCGG 2 cut(s) 256, 270
HphI GGTGA 3 cut(s) 47, 229, 357
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 3 cut(s) 50, 167, 235
HpyAV CCTTC 2 cut(s) 302, 319
HpyCH4III ACNGT 3 cut(s) 19, 144, 191
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 27, 69
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 84, 153
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 31, 217, 412
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 7, 82, 163, 274, 282, 295
LguI GCTCTTC 2 cut(s) 65, 202
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 63, 225, 235, 269, 283, 370
Lsp1109I GCAGC 4 cut(s) 11, 53, 330, 363
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 35, 107, 217
MalI GATC 6 cut(s) 9, 84, 165, 276, 284, 297
MboI GATC 6 cut(s) 7, 82, 163, 274, 282, 295
MboII GAAGA 2 cut(s) 52, 189
MfeI CAATTG 2 cut(s) 73, 135
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 73, 135
MnlI CCTC 5 cut(s) 165, 218, 221, 236, 259
MseI TTAA 1 cut(s) 415
MspA1I CMGCKG 2 cut(s) 66, 354
MspI CCGG 2 cut(s) 256, 270
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 2 cut(s) 73, 135
MvnI CGCG 2 cut(s) 81, 382
MwoI GCNNNNNNNGC 3 cut(s) 75, 84, 153
NciI CCSGG 1 cut(s) 271
NdeII GATC 6 cut(s) 7, 82, 163, 274, 282, 295
NlaIII CATG 3 cut(s) 31, 217, 412
NlaIV GGNNCC 2 cut(s) 155, 247
NmuCI GTSAC 2 cut(s) 35, 217
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 250
PciSI GCTCTTC 2 cut(s) 65, 202
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 6 cut(s) 26, 68, 80, 320, 353, 356
Ple19I CGATCG 1 cut(s) 85
PspEI GGTNACC 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 155, 247
PspXI VCTCGAGB 1 cut(s) 250
PsuI RGATCY 1 cut(s) 7
PvuI CGATCG 1 cut(s) 85
RgaI GCGATCGC 1 cut(s) 85
RsaI GTAC 2 cut(s) 125, 389
RsaNI GTAC 2 cut(s) 124, 388
SapI GCTCTTC 2 cut(s) 65, 202
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 6 cut(s) 25, 67, 79, 319, 352, 355
Sau3AI GATC 6 cut(s) 7, 82, 163, 274, 282, 295
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 42, 60, 197, 247, 313, 389, 396
SfaAI GCGATCGC 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 250
SgfI GCGATCGC 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 2 cut(s) 250, 398
SmoI CTYRAG 2 cut(s) 250, 398
Sse9I AATT 2 cut(s) 73, 135
SsiI CCGC 3 cut(s) 64, 79, 354
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 19, 144, 191
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 234, 251
TasI AATT 2 cut(s) 73, 135
TauI GCSGC 2 cut(s) 81, 357
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TseFI GTSAC 2 cut(s) 35, 217
TseI GCWGC 4 cut(s) 24, 66, 318, 351
Tsp45I GTSAC 2 cut(s) 35, 217
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 250
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.