AT3G60520

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010936
Physical Location & Seq
Reverse (-)
22361431 .. 22362579
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60520.2

Sequence Viewer

Length: 390 bp
ATGGTGGATCTTGAAAGAAGAGTGTGTTGCATGTGTGGTGATGTGGGATTCTTCGACAAGCTCTTTCACTGCAGCAAGTGCCTTAATCGCTTTCAACACTCGTACTGTAGTAGCTATTACAAAGAGCAAGCTGATCCAATCAAGATCTGTGATTGGTGTCAGTGTGAAGCAAAAAGTCGAACCGGAGCAAAACACGGTGTTAATGGTGGATCGTCTAAGAGATCGTACCGGTCGGAATATTCTTCACCTCATCACCAAATCAAACAGCAAGAGATTAACCAAACCACTAGTAGTAGTATTCCTCCAGCAGCCGACAAGGGAAAAACTGGCGTGCCTTCTCCTAGACCGGCCACTCGTAGGTACAAGCTTCTCAAGGATGTTATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.62

Weight (kDa)

9.14

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 15, 128, 217
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 3 cut(s) 104, 227, 362
AfiI CCNNNNNNNGG 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 14, 95
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 4 cut(s) 61, 114, 131, 367
AluI AGCT 4 cut(s) 61, 114, 131, 367
AlwI GGATC 3 cut(s) 15, 128, 217
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 72, 308
AsiGI ACCGGT 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 50, 237, 245
BbvI GCAGC 2 cut(s) 84, 320
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 2 cut(s) 288, 342
BfmI CTRYAG 2 cut(s) 70, 106
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 73, 309
BlsI GCNGC 2 cut(s) 74, 310
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 356
BsaWI WCCGGW 2 cut(s) 182, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse118I RCCGGY 2 cut(s) 228, 346
Bse1I ACTGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 84, 320
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 183, 229, 347
BslI CCNNNNNNNGG 1 cut(s) 357
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 5 cut(s) 7, 133, 144, 209, 221
BspANI GGCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 3 cut(s) 15, 128, 217
BsrFI RCCGGY 2 cut(s) 228, 346
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 2 cut(s) 228, 346
BssMI GATC 5 cut(s) 7, 133, 144, 209, 221
Bst4CI ACNGT 2 cut(s) 107, 197
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 129, 332
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 5 cut(s) 10, 136, 147, 212, 224
BstMBI GATC 5 cut(s) 7, 133, 144, 209, 221
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 78, 87
BstNSI RCATGY 1 cut(s) 34
BstSFI CTRYAG 2 cut(s) 70, 106
BstV1I GCAGC 2 cut(s) 84, 320
BstX2I RGATCY 2 cut(s) 7, 144
BstYI RGATCY 2 cut(s) 7, 144
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 167
Cac8I GCNNGC 2 cut(s) 129, 332
Cfr10I RCCGGY 2 cut(s) 228, 346
Csp6I GTAC 3 cut(s) 103, 226, 361
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 61, 114, 131, 311, 350, 367
CviKI_1 RGCY 6 cut(s) 61, 114, 131, 311, 350, 367
CviQI GTAC 3 cut(s) 103, 226, 361
DdeI CTNAG 1 cut(s) 216
DpnI GATC 5 cut(s) 9, 135, 146, 211, 223
DpnII GATC 5 cut(s) 7, 133, 144, 209, 221
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 383
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 73, 309
Fsp4HI GCNGC 2 cut(s) 73, 309
FspBI CTAG 2 cut(s) 288, 342
GluI GCNGC 2 cut(s) 73, 309
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 350
HapII CCGG 3 cut(s) 183, 229, 347
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 48
HpaII CCGG 3 cut(s) 183, 229, 347
HphI GGTGA 3 cut(s) 50, 237, 245
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 11, 142
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 107, 197
HpyCH4V TGCA 2 cut(s) 30, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 87
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 5 cut(s) 7, 133, 144, 209, 221
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 5 cut(s) 196, 242, 312, 318, 360
Lsp1109I GCAGC 2 cut(s) 84, 320
MaeI CTAG 2 cut(s) 288, 342
MalI GATC 5 cut(s) 9, 135, 146, 211, 223
MboI GATC 5 cut(s) 7, 133, 144, 209, 221
MboII GAAGA 3 cut(s) 30, 43, 234
MflI RGATCY 2 cut(s) 7, 144
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 258, 312
MseI TTAA 3 cut(s) 84, 201, 276
MspI CCGG 3 cut(s) 183, 229, 347
MwoI GCNNNNNNNGC 2 cut(s) 78, 87
NdeII GATC 5 cut(s) 7, 133, 144, 209, 221
NlaIII CATG 1 cut(s) 34
NspI RCATGY 1 cut(s) 34
PfeI GAWTC 1 cut(s) 48
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 2 cut(s) 74, 310
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 7, 144
RsaI GTAC 3 cut(s) 104, 227, 362
RsaNI GTAC 3 cut(s) 103, 226, 361
SaqAI TTAA 3 cut(s) 84, 201, 276
SatI GCNGC 2 cut(s) 73, 309
Sau3AI GATC 5 cut(s) 7, 133, 144, 209, 221
SetI ASST 6 cut(s) 63, 116, 133, 250, 362, 369
SfcI CTRYAG 2 cut(s) 70, 106
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 287
SspI AATATT 1 cut(s) 239
SspMI CTAG 2 cut(s) 288, 342
TaaI ACNGT 2 cut(s) 107, 197
TaqI TCGA 2 cut(s) 54, 178
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 3 cut(s) 84, 201, 276
Tru9I TTAA 3 cut(s) 84, 201, 276
TscAI CASTG 2 cut(s) 74, 167
TseI GCWGC 2 cut(s) 72, 308
TspRI CASTG 2 cut(s) 74, 167
XceI RCATGY 1 cut(s) 34
XspI CTAG 2 cut(s) 288, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.