AT1G02560

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016629
Physical Location & Seq
Forward (+)
537740 .. 540127
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02560.1

Sequence Viewer

Length: 897 bp
ATGGCTCATGCTTGCGTCTCTACATCGGCTTCTTCTCTCAGATTCACAGCTGGATTCGTCTCCGCTAGTCCCAATGGCTCCTCTTTCGATTCTCCCAAGCTTTCTCTTCCTTTCGAGCCTCTCCGTTCAAGGAAGACGAATAAGTTAGTTAGCGATAGAAAGAATTGGAAGAATTCAACTCCGAAAGCTGTATATTCCGGCAATCTCTGGACACCGGAGATTCCGTCTCCTCAAGGAGTTTGGTCCATTAGAGATGATTTACAAGTCCCTTCTTCGCCGTATTTTCCTGCTTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAGAGTATCATTAGTCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGACGATATGGCAAACATAATTGTAGCTCAACTCCTGTATCTTGATGCTGTTGATCCTACTAAGGATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGGCATGGCTATATTCGATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGTATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGGAAAAAGATACAGTCTACCAAACTCAAGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACCACACTGGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATTTCTTCATGAGTGCCAAAGAAGCAAAAGAGTATGGACTTATCGACGGTGTTATCATGAACCCTCTTAAAGCTCTCCAGCCACTTGCAGCAGCTTAA

Protein Analysis

298

Amino Acids

32.36

Weight (kDa)

8.35

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 109 - 287 3.7e-81 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016629)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02560
fragaria_vesca FvH4_5g39050
malus_domestica MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica Prupe.8G265800_v2.0.a1
pyrus_communis pycom03g23210 pycom11g27350
rosa_chinensis RchiOBHm_Chr7g0241011
rosa_laevigata RLG00000000604
rosa_multiflora Rmu_sc0003187.1_g000009
rosa_roxburghii Rroxscaffold_3G00219320
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7BG467700
rosa_wichuraiana Rw7G041930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 628
AciI CCGC 2 cut(s) 63, 659
AclI AACGTT 1 cut(s) 331
AclWI GGATC 3 cut(s) 443, 499, 643
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 2 cut(s) 129, 177
AjnI CCWGG 3 cut(s) 484, 768, 783
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 22, 64, 231
AlwI GGATC 3 cut(s) 443, 499, 643
AoxI GGCC 2 cut(s) 539, 679
ApeKI GCWGC 4 cut(s) 572, 715, 887, 890
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 243, 308
AvaII GGWCC 2 cut(s) 243, 308
BaeI ACNNNNGTAYC 2 cut(s) 416, 449
BalI TGGCCA 1 cut(s) 681
BanII GRGCYC 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 2 cut(s) 559, 702
BccI CCATC 1 cut(s) 660
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 3 cut(s) 486, 770, 785
BcoDI GTCTC 3 cut(s) 22, 64, 231
BfaI CTAG 3 cut(s) 66, 569, 576
BisI GCNGC 5 cut(s) 573, 659, 716, 888, 891
BlsI GCNGC 5 cut(s) 574, 660, 717, 889, 892
Bme1390I CCNGG 3 cut(s) 486, 770, 785
Bme18I GGWCC 2 cut(s) 243, 308
BmgT120I GGNCC 2 cut(s) 243, 308
BmiI GGNNCC 2 cut(s) 79, 607
BmrFI CCNGG 3 cut(s) 486, 770, 785
BmsI GCATC 2 cut(s) 430, 727
BpiI GAAGAC 1 cut(s) 140
BpmI CTGGAG 2 cut(s) 791, 860
BpuEI CTTGAG 4 cut(s) 216, 282, 622, 657
BsaBI GATNNNNATC 1 cut(s) 647
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse1I ACTGG 1 cut(s) 763
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 3 cut(s) 486, 770, 785
BseGI GGATG 2 cut(s) 400, 534
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 2 cut(s) 70, 219
BseXI GCAGC 2 cut(s) 559, 702
BshFI GGCC 2 cut(s) 541, 681
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 3 cut(s) 198, 215, 538
BslFI GGGAC 2 cut(s) 54, 251
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 3 cut(s) 22, 64, 231
BsmBI CGTCTC 3 cut(s) 22, 64, 231
BsmFI GGGAC 2 cut(s) 54, 251
BsnI GGCC 2 cut(s) 541, 681
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 3 cut(s) 448, 491, 648
BspACI CCGC 2 cut(s) 63, 659
BspANI GGCC 2 cut(s) 541, 681
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 2 cut(s) 807, 855
BspLI GGNNCC 2 cut(s) 79, 607
BspPI GGATC 3 cut(s) 443, 499, 643
BspQI GCTCTTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 763
BssMI GATC 3 cut(s) 448, 491, 648
Bst2UI CCWGG 3 cut(s) 486, 770, 785
Bst4CI ACNGT 5 cut(s) 556, 626, 740, 797, 848
Bst6I CTCTTC 2 cut(s) 111, 362
BstC8I GCNNGC 2 cut(s) 13, 505
BstDEI CTNAG 3 cut(s) 38, 456, 596
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 2 cut(s) 400, 534
BstKTI GATC 3 cut(s) 451, 494, 651
BstMAI GTCTC 3 cut(s) 22, 64, 231
BstMBI GATC 3 cut(s) 448, 491, 648
BstMWI GCNNNNNNNGC 3 cut(s) 509, 538, 821
BstNI CCWGG 3 cut(s) 486, 770, 785
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 3 cut(s) 484, 768, 783
BstV1I GCAGC 2 cut(s) 559, 702
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 541, 681
BtsCI GGATG 2 cut(s) 400, 534
BtsIMutI CAGTG 2 cut(s) 552, 756
Cac8I GCNNGC 2 cut(s) 13, 505
CciI TCATGA 2 cut(s) 807, 855
Cfr13I GGNCC 2 cut(s) 243, 308
CseI GACGC 1 cut(s) 4
CviAII CATG 5 cut(s) 8, 469, 508, 808, 856
DdeI CTNAG 3 cut(s) 38, 456, 596
DpnI GATC 3 cut(s) 450, 493, 650
DpnII GATC 3 cut(s) 448, 491, 648
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 111, 362
EarI CTCTTC 2 cut(s) 111, 362
Ecl136II GAGCTC 1 cut(s) 671
Eco24I GRGCYC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 243, 308
Eco53kI GAGCTC 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 671
EcoO65I GGTNACC 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 3 cut(s) 484, 768, 783
EcoT38I GRGCYC 1 cut(s) 673
Esp3I CGTCTC 3 cut(s) 22, 64, 231
FaeI CATG 5 cut(s) 11, 472, 511, 811, 859
FaqI GGGAC 2 cut(s) 54, 251
FatI CATG 5 cut(s) 7, 468, 507, 807, 855
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 573, 659, 716, 888, 891
FokI GGATG 2 cut(s) 407, 521
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 5 cut(s) 573, 659, 716, 888, 891
FspBI CTAG 3 cut(s) 66, 569, 576
GluI GCNGC 5 cut(s) 573, 659, 716, 888, 891
GsuI CTGGAG 2 cut(s) 791, 860
HaeIII GGCC 2 cut(s) 541, 681
HapII CCGG 3 cut(s) 198, 215, 538
HgaI GACGC 1 cut(s) 4
Hin1II CATG 5 cut(s) 11, 472, 511, 811, 859
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 4 cut(s) 42, 54, 89, 220
HpaII CCGG 3 cut(s) 198, 215, 538
Hpy166II GTNNAC 2 cut(s) 552, 629
Hpy188I TCNGA 2 cut(s) 41, 183
Hpy188III TCNNGA 5 cut(s) 208, 337, 437, 808, 856
Hpy8I GTNNAC 2 cut(s) 552, 629
Hpy99I CGWCG 1 cut(s) 848
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 5 cut(s) 556, 626, 740, 797, 848
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 3 cut(s) 325, 718, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 538, 821
HpyF3I CTNAG 3 cut(s) 38, 456, 596
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 5 cut(s) 11, 472, 511, 811, 859
Kzo9I GATC 3 cut(s) 448, 491, 648
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 3 cut(s) 83, 584, 668
Lsp1109I GCAGC 2 cut(s) 559, 702
LweI GCATC 2 cut(s) 430, 727
MaeI CTAG 3 cut(s) 66, 569, 576
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 496, 740
MalI GATC 3 cut(s) 450, 493, 650
MboI GATC 3 cut(s) 448, 491, 648
MboII GAAGA 8 cut(s) 24, 98, 145, 181, 264, 349, 787, 796
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 4 cut(s) 163, 172, 414, 478
MluNI TGGCCA 1 cut(s) 681
MnlI CCTC 7 cut(s) 91, 129, 240, 324, 522, 755, 873
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
MseI TTAA 3 cut(s) 477, 867, 895
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 2 cut(s) 50, 503
MspI CCGG 3 cut(s) 198, 215, 538
MspR9I CCNGG 3 cut(s) 486, 770, 785
MvaI CCWGG 3 cut(s) 486, 770, 785
MwoI GCNNNNNNNGC 3 cut(s) 509, 538, 821
NdeII GATC 3 cut(s) 448, 491, 648
NlaIII CATG 5 cut(s) 11, 472, 511, 811, 859
NlaIV GGNNCC 2 cut(s) 79, 607
PagI TCATGA 2 cut(s) 807, 855
PciSI GCTCTTC 1 cut(s) 362
PfeI GAWTC 4 cut(s) 42, 54, 89, 220
PkrI GCNGC 5 cut(s) 574, 660, 717, 889, 892
Psp124BI GAGCTC 1 cut(s) 673
Psp1406I AACGTT 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 484, 768, 783
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 484, 768, 783
PspN4I GGNNCC 2 cut(s) 79, 607
PspPI GGNCC 2 cut(s) 243, 308
PvuII CAGCTG 2 cut(s) 50, 503
SacI GAGCTC 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 477, 867, 895
SatI GCNGC 5 cut(s) 573, 659, 716, 888, 891
Sau3AI GATC 3 cut(s) 448, 491, 648
Sau96I GGNCC 2 cut(s) 243, 308
ScrFI CCNGG 3 cut(s) 486, 770, 785
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 2 cut(s) 430, 727
SinI GGWCC 2 cut(s) 243, 308
SmlI CTYRAG 4 cut(s) 231, 297, 637, 672
SmoI CTYRAG 4 cut(s) 231, 297, 637, 672
Sse9I AATT 4 cut(s) 163, 172, 414, 478
SsiI CCGC 2 cut(s) 63, 659
SspMI CTAG 3 cut(s) 66, 569, 576
SstI GAGCTC 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 484, 768, 783
TaaI ACNGT 5 cut(s) 556, 626, 740, 797, 848
TaiI ACGT 1 cut(s) 334
TaqI TCGA 4 cut(s) 87, 114, 519, 843
TasI AATT 4 cut(s) 163, 172, 414, 478
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 4 cut(s) 42, 54, 89, 220
Tru1I TTAA 3 cut(s) 477, 867, 895
Tru9I TTAA 3 cut(s) 477, 867, 895
TscAI CASTG 2 cut(s) 559, 763
TseI GCWGC 4 cut(s) 572, 715, 887, 890
TspDTI ATGAA 3 cut(s) 723, 796, 872
TspGWI ACGGA 2 cut(s) 113, 213
TspRI CASTG 2 cut(s) 559, 763
VpaK11BI GGWCC 2 cut(s) 243, 308
XapI RAATTY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 628
XspI CTAG 3 cut(s) 66, 569, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.