Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003187.1

Orthogroup ID

OG0016629

Physical Location & Seq

Genomic Coordinates Reverse (-)

38142 .. 41175

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003187.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggcgcagacctgcgtttccacatcggcctcctcctctctcagattcaactccctcggcttcgctctaaaccctagctcttgttcccagccacacagcctcaccgtctctctcccctctcaacgctttccttcaaggaagttgaagaagttagttgggaataggaaaggtctccagagttctccggtgaaggctgtctatgatgaattttgggcaccgggttctcgtgaaggaatttggtccataagggaggatttgcaagttccatcttcgccatactttcctgcctatgcacagggacagggtccgccgcctatggtgcaagaacgctttcagagtgttatcagtcagcttttccagcatagaatcattcgttgtgggggagctgtggatgatgatatggcaaatataattgtcgctcagcttctttatcttgatgctgttgatcctaaaaaggatattgtcatgtatgtgaattcacctggaggatctgttactgctggtatggccattttcgacactatgaggcatatccgacctgatgtctctactgtgtgtgttggactagcagctagtatgggggctttcctgcttagcgctggcaccaaaggaaaacggtacagcttgccaaattcaaggataatgatccatcagcctcttggtggagctcaaggagggcaaactgacatagatattcaggcaaatgaaatgctgcatcacaaggcaaacttaaatggttatctctcctaccacactggtcaaagtcttgaaaagatcaaccaagacacagatcgtgatttcttcatgagtgcaaaggaggccaaggagtatgggcttatagatggtgtgatattgaatcctctcaaagctctccaaccgttgccagttgcagtagagagtactgatgaatccaatttagatgagaaggtgagttcatttataatgctgaatgatgttgatatccacccatcagagaagagaaatgctagttttgctgttgtccctctgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

337

Amino Acids

36.73

Weight (kDa)

6.71

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02560
fragaria_vesca	FvH4_5g39050
malus_domestica	MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica	Prupe.8G265800_v2.0.a1
pyrus_communis	pycom03g23210 pycom11g27350
rosa_chinensis	RchiOBHm_Chr7g0241011
rosa_laevigata	RLG00000000604
rosa_multiflora	Rmu_sc0003187.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219320
rosa_rugosa	Rorug07G0341200
rosa_samantha	Rh7BG467700
rosa_wichuraiana	Rw7G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
Acc36I	ACCTGC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	214, 602
AciI	CCGC	2 cut(s)	308, 311
AclWI	GGATC	3 cut(s)	440, 496, 640
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	4 cut(s)	206, 234, 475, 631
AfaI	GTAC	2 cut(s)	620, 901
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	6 cut(s)	49, 135, 145, 636, 770, 856
AhdI	GACNNNNNGTC	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	8 cut(s)	78, 352, 386, 424, 572, 624, 668, 869
AluI	AGCT	8 cut(s)	78, 352, 386, 424, 572, 624, 668, 869
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	3 cut(s)	112, 176, 550
AlwI	GGATC	3 cut(s)	440, 496, 640
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	3 cut(s)	27, 507, 819
ApeKI	GCWGC	2 cut(s)	569, 712
ApoI	RAATTY	4 cut(s)	206, 234, 475, 631
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	7, 599
AspS9I	GGNCC	2 cut(s)	240, 305
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	4 cut(s)	94, 199, 471, 940
AvaII	GGWCC	2 cut(s)	240, 305
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	509
BanI	GGYRCC	2 cut(s)	214, 602
BanII	GRGCYC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	2 cut(s)	581, 699
BccI	CCATC	4 cut(s)	274, 657, 836, 976
BciT130I	CCWGG	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	112, 176, 550
BfaI	CTAG	4 cut(s)	75, 566, 573, 987
BfoI	RGCGCY	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	3 cut(s)	311, 570, 713
BlpI	GCTNAGC	2 cut(s)	420, 593
BlsI	GCNGC	3 cut(s)	312, 571, 714
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	219, 483
Bme18I	GGWCC	2 cut(s)	240, 305
BmeRI	GACNNNNNGTC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	240, 305
BmiI	GGNNCC	3 cut(s)	216, 306, 604
BmrFI	CCNGG	2 cut(s)	219, 483
BmsI	GCATC	2 cut(s)	427, 724
BpmI	CTGGAG	2 cut(s)	158, 504
Bpu1102I	GCTNAGC	2 cut(s)	420, 593
BpuEI	CTTGAG	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	55, 822
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	2 cut(s)	760, 884
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	55, 822
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMII	CTCAG	2 cut(s)	55, 434
BseNI	ACTGG	2 cut(s)	760, 884
BseRI	GAGGAG	2 cut(s)	22, 25
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	581, 699
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	3 cut(s)	29, 509, 821
BshNI	GGYRCC	2 cut(s)	214, 602
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	185, 218
BslFI	GGGAC	2 cut(s)	312, 986
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	3 cut(s)	112, 176, 550
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	312, 986
BsnI	GGCC	3 cut(s)	29, 509, 821
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	217, 670
Bsp143I	GATC	5 cut(s)	445, 488, 645, 774, 790
Bsp1720I	GCTNAGC	2 cut(s)	420, 593
BspACI	CCGC	2 cut(s)	308, 311
BspANI	GGCC	3 cut(s)	29, 509, 821
BspCNI	CTCAG	2 cut(s)	54, 433
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	216, 306, 604
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	3 cut(s)	440, 496, 640
BspT107I	GGYRCC	2 cut(s)	214, 602
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	760, 884
BssECI	CCNNGG	2 cut(s)	55, 822
BssMI	GATC	5 cut(s)	445, 488, 645, 774, 790
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	106, 553, 618, 879
Bst6I	CTCTTC	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	601, 626
BstDEI	CTNAG	3 cut(s)	41, 420, 593
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	2 cut(s)	7, 599
BstKTI	GATC	5 cut(s)	448, 491, 648, 777, 793
BstMAI	GTCTC	3 cut(s)	112, 176, 550
BstMBI	GATC	5 cut(s)	445, 488, 645, 774, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	319, 358, 506, 818, 992
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	217, 481
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	581, 699
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	29, 509, 821
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	601, 626
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	7, 599
Cfr13I	GGNCC	2 cut(s)	240, 305
Csp6I	GTAC	2 cut(s)	619, 900
CviAII	CATG	2 cut(s)	466, 805
CviQI	GTAC	2 cut(s)	619, 900
DdeI	CTNAG	3 cut(s)	41, 420, 593
DpnI	GATC	5 cut(s)	447, 490, 647, 776, 792
DpnII	GATC	5 cut(s)	445, 488, 645, 774, 790
DriI	GACNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	971
Eam1105I	GACNNNNNGTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	971
EciI	GGCGGA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	2 cut(s)	240, 305
Eco47III	AGCGCT	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	469, 808
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	2 cut(s)	312, 986
FatI	CATG	2 cut(s)	465, 804
Fnu4HI	GCNGC	3 cut(s)	311, 570, 713
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	3 cut(s)	311, 570, 713
FspBI	CTAG	4 cut(s)	75, 566, 573, 987
GlaI	GCGC	2 cut(s)	6, 598
GluI	GCNGC	3 cut(s)	311, 570, 713
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	2 cut(s)	158, 504
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	29, 509, 821
HapII	CCGG	2 cut(s)	185, 218
HhaI	GCGC	2 cut(s)	7, 599
Hin1II	CATG	2 cut(s)	469, 808
Hin6I	GCGC	2 cut(s)	5, 597
HinP1I	GCGC	2 cut(s)	5, 597
HinfI	GANTC	4 cut(s)	45, 366, 856, 908
HpaII	CCGG	2 cut(s)	185, 218
HphI	GGTGA	4 cut(s)	94, 199, 471, 940
Hpy188I	TCNGA	5 cut(s)	44, 336, 536, 973, 1008
Hpy188III	TCNNGA	6 cut(s)	175, 227, 434, 767, 794, 805
HpyAV	CCTTC	4 cut(s)	141, 184, 224, 919
HpyCH4III	ACNGT	4 cut(s)	106, 553, 618, 879
HpyCH4V	TGCA	6 cut(s)	259, 293, 322, 715, 812, 890
HpyF10VI	GCNNNNNNNGC	5 cut(s)	319, 358, 506, 818, 992
HpyF3I	CTNAG	3 cut(s)	41, 420, 593
Hsp92II	CATG	2 cut(s)	469, 808
HspAI	GCGC	2 cut(s)	5, 597
Kzo9I	GATC	5 cut(s)	445, 488, 645, 774, 790
LmnI	GCTCC	2 cut(s)	383, 665
Lsp1109I	GCAGC	2 cut(s)	581, 699
LweI	GCATC	2 cut(s)	427, 724
MaeI	CTAG	4 cut(s)	75, 566, 573, 987
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	5 cut(s)	447, 490, 647, 776, 792
MboI	GATC	5 cut(s)	445, 488, 645, 774, 790
MboII	GAAGA	4 cut(s)	157, 261, 793, 988
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	2 cut(s)	217, 670
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	6 cut(s)	206, 234, 411, 475, 631, 913
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	541, 559, 898
Mox20I	TGGCCA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	1 cut(s)	731
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	2 cut(s)	185, 218
MspR9I	CCNGG	2 cut(s)	219, 483
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	5 cut(s)	319, 358, 506, 818, 992
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	5 cut(s)	445, 488, 645, 774, 790
NlaIII	CATG	2 cut(s)	469, 808
NlaIV	GGNNCC	3 cut(s)	216, 306, 604
NmeAIII	GCCGAG	1 cut(s)	36
PagI	TCATGA	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	45, 366, 856, 908
PflFI	GACNNNGTC	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	312, 571, 714
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	216, 306, 604
PspPI	GGNCC	2 cut(s)	240, 305
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	303
RsaI	GTAC	2 cut(s)	620, 901
RsaNI	GTAC	2 cut(s)	619, 900
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	1 cut(s)	731
SatI	GCNGC	3 cut(s)	311, 570, 713
Sau3AI	GATC	5 cut(s)	445, 488, 645, 774, 790
Sau96I	GGNCC	2 cut(s)	240, 305
ScaI	AGTACT	1 cut(s)	901
ScrFI	CCNGG	2 cut(s)	219, 483
SduI	GDGCHC	2 cut(s)	217, 670
SfaNI	GCATC	2 cut(s)	427, 724
SinI	GGWCC	2 cut(s)	240, 305
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	6 cut(s)	206, 234, 411, 475, 631, 913
SsiI	CCGC	2 cut(s)	308, 311
SspMI	CTAG	4 cut(s)	75, 566, 573, 987
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	217, 481
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	4 cut(s)	106, 553, 618, 879
TaqI	TCGA	1 cut(s)	516
TasI	AATT	6 cut(s)	206, 234, 411, 475, 631, 913
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	4 cut(s)	45, 366, 856, 908
Tru1I	TTAA	1 cut(s)	731
Tru9I	TTAA	1 cut(s)	731
TscAI	CASTG	1 cut(s)	760
TseI	GCWGC	2 cut(s)	569, 712
TspDTI	ATGAA	5 cut(s)	219, 720, 793, 921, 924
TspRI	CASTG	1 cut(s)	760
Tth111I	GACNNNGTC	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	240, 305
XapI	RAATTY	4 cut(s)	206, 234, 475, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	4 cut(s)	75, 566, 573, 987
ZrmI	AGTACT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.