Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016629

Physical Location & Seq

Genomic Coordinates Forward (+)

23121333 .. 23123942

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23210.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGCAGACCTCCGTTTCCACCTCCGCCTCCGCACTCAGATTCAACTCCCTCGTCTTCGCCCCAAACCCTAGCTCTTCTCCCCAACCGCAGACCCTTTCTCTCCCCTTCCACCGCTTTGCTTCAAGGAATTTGAAAAATTTAGTTGGGAGCAGCAAAAGGAGTTCTCCAGTGAAAGCTATCTACTCTGGTGAATTTTGGACACCGGCGGAAAGGAATTCCCGTCAAGGAATTTGGTCCATAAGGGAGGATGTCCAAGTTCCATCTTCGCCATACTTCCCTGCATATGCACAGGGACAGGGGCCACCCCCCATGAGAATAATACGTTGTGGGGGAGCTGTTGATGATGATATGGCAAACATAATTGTTGCTCAACTTCTTTACCTTGATGCTGTTGATCCTCAGAAGGATATTGTCATGTATGTTAATTCACTAACAGGAGGATCTGTTACTGCTGGTATGGCCATTTTTGACACAATGAGGCATATCCGACCTGATGTCTCCACTGTTTGCGTTGGACTTGCTGCTAGTATGGGAGCTTTCCTGCTTAGCGCTGGTACCAAAGGAAAAAGATACAGCTTGCCAAATTCAAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGTGGGCAAACTGACATTGATATTCAGGCAAATGAGATGCTACACCATAAGGCAAACTTGAATGGCTATCTCTCGTACCACACTGGTCAAAGTCTTGAAAAGATCAACCAAGACACAGATCGCGATTTCTTCATGAGTGCGAAGGAAGCCCAAGAATACGGGCTTATAGATGGTGTTATATCGAATCCTCTCAAAGCTTTCCAACCTTTGGCAGCCGCAACAGCGAGTGGAGATGAACCTGCTGAGCAGACTGTTGCGGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

298

Amino Acids

31.95

Weight (kDa)

6.3

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02560
fragaria_vesca	FvH4_5g39050
malus_domestica	MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica	Prupe.8G265800_v2.0.a1
pyrus_communis	pycom03g23210 pycom11g27350
rosa_chinensis	RchiOBHm_Chr7g0241011
rosa_laevigata	RLG00000000604
rosa_multiflora	Rmu_sc0003187.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219320
rosa_rugosa	Rorug07G0341200
rosa_samantha	Rh7BG467700
rosa_wichuraiana	Rw7G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	874
Acc65I	GGTACC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccII	CGCG	1 cut(s)	750
AciI	CCGC	7 cut(s)	27, 33, 89, 115, 209, 843, 884
AclWI	GGATC	3 cut(s)	392, 451, 595
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	6 cut(s)	130, 139, 194, 217, 231, 586
AfaI	GTAC	2 cut(s)	559, 704
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	617, 835
AgsI	TTSAA	6 cut(s)	46, 126, 136, 591, 688, 725
AhdI	GACNNNNNGTC	1 cut(s)	497
AluBI	AGCT	7 cut(s)	75, 179, 338, 539, 579, 623, 824
AluI	AGCT	7 cut(s)	75, 179, 338, 539, 579, 623, 824
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	3 cut(s)	392, 451, 595
Aor51HI	AGCGCT	1 cut(s)	553
AoxI	GGCC	2 cut(s)	302, 462
ApeKI	GCWGC	3 cut(s)	153, 524, 839
ApoI	RAATTY	6 cut(s)	130, 139, 194, 217, 231, 586
Asp718I	GGTACC	1 cut(s)	557
AspLEI	GCGC	2 cut(s)	7, 554
AspS9I	GGNCC	2 cut(s)	237, 302
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	165, 511, 851
BccI	CCATC	3 cut(s)	271, 612, 791
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	2 cut(s)	72, 528
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	4 cut(s)	154, 525, 840, 843
BlpI	GCTNAGC	2 cut(s)	548, 870
BlsI	GCNGC	4 cut(s)	155, 526, 841, 844
Bme18I	GGWCC	1 cut(s)	237
BmeRI	GACNNNNNGTC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	237, 302
BmiI	GGNNCC	2 cut(s)	303, 559
BmsI	GCATC	2 cut(s)	379, 654
BpiI	GAAGAC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	2 cut(s)	548, 870
BpuEI	CTTGAG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 835
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	170, 715
Bse8I	GATNNNNATC	1 cut(s)	599
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	599
BseLI	CCNNNNNNNGG	2 cut(s)	617, 835
BseMII	CTCAG	3 cut(s)	52, 416, 861
BseNI	ACTGG	2 cut(s)	170, 715
BseXI	GCAGC	3 cut(s)	165, 511, 851
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	304, 464
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	617, 835
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	304, 464
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	5 cut(s)	397, 443, 600, 729, 745
Bsp1720I	GCTNAGC	2 cut(s)	548, 870
Bsp68I	TCGCGA	1 cut(s)	750
BspACI	CCGC	7 cut(s)	27, 33, 89, 115, 209, 843, 884
BspANI	GGCC	2 cut(s)	304, 464
BspCNI	CTCAG	3 cut(s)	51, 415, 862
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	303, 559
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	3 cut(s)	392, 451, 595
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	170, 715
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	5 cut(s)	397, 443, 600, 729, 745
Bst4CI	ACNGT	3 cut(s)	508, 880, 890
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	4 cut(s)	38, 402, 548, 870
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	750
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	7, 554
BstKTI	GATC	5 cut(s)	400, 446, 603, 732, 748
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	5 cut(s)	397, 443, 600, 729, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 773, 848
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	3 cut(s)	165, 511, 851
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	304, 464
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	3 cut(s)	177, 504, 708
BtuMI	TCGCGA	1 cut(s)	750
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	2 cut(s)	7, 554
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	237, 302
Csp6I	GTAC	2 cut(s)	558, 703
CviAII	CATG	3 cut(s)	313, 418, 760
CviQI	GTAC	2 cut(s)	558, 703
DdeI	CTNAG	4 cut(s)	38, 402, 548, 870
DpnI	GATC	5 cut(s)	399, 445, 602, 731, 747
DpnII	GATC	5 cut(s)	397, 443, 600, 729, 745
DriI	GACNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	2 cut(s)	16, 224
Ecl136II	GAGCTC	1 cut(s)	623
Eco24I	GRGCYC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	553
Eco53kI	GAGCTC	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	3 cut(s)	316, 421, 763
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	312, 417, 759
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	154, 525, 840, 843
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	4 cut(s)	154, 525, 840, 843
FspBI	CTAG	2 cut(s)	72, 528
GlaI	GCGC	2 cut(s)	6, 553
GluI	GCNGC	4 cut(s)	154, 525, 840, 843
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	304, 464
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	2 cut(s)	7, 554
Hin1II	CATG	3 cut(s)	316, 421, 763
Hin6I	GCGC	2 cut(s)	5, 552
HinP1I	GCGC	2 cut(s)	5, 552
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	2 cut(s)	42, 811
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	41, 405, 491
Hpy188III	TCNNGA	3 cut(s)	722, 749, 760
HpyAV	CCTTC	3 cut(s)	118, 400, 763
HpyCH4III	ACNGT	3 cut(s)	508, 880, 890
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	284, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 773, 848
HpyF3I	CTNAG	4 cut(s)	38, 402, 548, 870
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	316, 421, 763
HspAI	GCGC	2 cut(s)	5, 552
KpnI	GGTACC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	397, 443, 600, 729, 745
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	4 cut(s)	150, 335, 536, 620
Lsp1109I	GCAGC	3 cut(s)	165, 511, 851
LweI	GCATC	2 cut(s)	379, 654
MaeI	CTAG	2 cut(s)	72, 528
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	5 cut(s)	399, 445, 602, 731, 747
MboI	GATC	5 cut(s)	397, 443, 600, 729, 745
MboII	GAAGA	4 cut(s)	49, 69, 258, 748
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	625
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	8 cut(s)	130, 139, 194, 217, 231, 363, 427, 586
MluNI	TGGCCA	1 cut(s)	464
MmeI	TCCRAC	3 cut(s)	496, 514, 853
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	2 cut(s)	426, 892
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	3 cut(s)	461, 773, 848
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	5 cut(s)	397, 443, 600, 729, 745
NlaIII	CATG	3 cut(s)	316, 421, 763
NlaIV	GGNNCC	2 cut(s)	303, 559
NruI	TCGCGA	1 cut(s)	750
PagI	TCATGA	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	42, 811
PflMI	CCANNNNNTGG	1 cut(s)	835
PkrI	GCNGC	4 cut(s)	155, 526, 841, 844
Psp124BI	GAGCTC	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	303, 559
PspPI	GGNCC	2 cut(s)	237, 302
PsuI	RGATCY	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	750
RsaI	GTAC	2 cut(s)	559, 704
RsaNI	GTAC	2 cut(s)	558, 703
SacI	GAGCTC	1 cut(s)	625
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	426, 892
SatI	GCNGC	4 cut(s)	154, 525, 840, 843
Sau3AI	GATC	5 cut(s)	397, 443, 600, 729, 745
Sau96I	GGNCC	2 cut(s)	237, 302
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	379, 654
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	8 cut(s)	130, 139, 194, 217, 231, 363, 427, 586
SsiI	CCGC	7 cut(s)	27, 33, 89, 115, 209, 843, 884
SspMI	CTAG	2 cut(s)	72, 528
SstI	GAGCTC	1 cut(s)	625
TaaI	ACNGT	3 cut(s)	508, 880, 890
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	809
TasI	AATT	8 cut(s)	130, 139, 194, 217, 231, 363, 427, 586
TauI	GCSGC	1 cut(s)	845
TfiI	GAWTC	2 cut(s)	42, 811
Tru1I	TTAA	2 cut(s)	426, 892
Tru9I	TTAA	2 cut(s)	426, 892
TscAI	CASTG	3 cut(s)	177, 511, 715
TseI	GCWGC	3 cut(s)	153, 524, 839
TspDTI	ATGAA	2 cut(s)	748, 876
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	3 cut(s)	177, 511, 715
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	6 cut(s)	130, 139, 194, 217, 231, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	2 cut(s)	72, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.