FvH4_5g39050

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016629
Physical Location & Seq
Forward (+)
28833201 .. 28835865
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39050.t1

Sequence Viewer

Length: 930 bp
ATGGCGCAGACGTGCGTTTCCACATCGCCCTCGTCTCTCAGATTCAACTCCCTCGGCTTCGCTCTAAACCCTAGCTCTTGCTCCCAGCCTCACAGCCTCACCGTCTCTCTCCCCTCTCACCGCTTTCCTTCTAGGAAGTTGAAGAAGTTAGGTGGCAATAGAAAAGGTCTGCAGAGTTCTCCGGTGAAAGCTGTATATGATGAGTTTTGGGCACCGGGTTCGCGTGAAGGAATTTGGTCCATAAGGGAGGATTTGCAAGTTCCATCTTCGCCGTACTTTCCTGCTTATGCGCAGGGACAGGGTCCACCGCCTATGGTGCAAGAGCGCTTTCAGAGTGTTATAAGTCAGCTTTTCCAGCATAGAATCATTCGTTGTGGGGGAGCTGTGGATGATGATATGGCAAATATCATTGTCGCTCAACTTCTTTACCTTGATGCTGTTGATCCTAAAAAGGATATTGTCATGTATGTGAATTCGCCTGGAGGATCTGTTACTGCTGGTATGGCCATTTTCGACACTATGAGGCATATCCGACCTGATGTCTCTACTGTGTGTGTTGGCCTAGCAGCTAGTATGGGGGCTTTCCTGCTTAGTGCTGGCACAAAAGGAAAACGGTATAGCTTGCCAAATTCAAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCACAAGGCAAACTTAAATGGTTATCTTGCGTACCACACCGGTCAGAGTCTTGCAAAGATCAACCAAGACACGGATCGTGATTTCTTCATGAGTGCAAAGGAGGCCAAGGAGTATGGGCTTATAGATGGTGTGATATTGAATCCCCTCAAAGCTCTACAACCGTTGCCAGTCGCGGTAGAGAGTACTGATGAATCCAGCGAGAAAGCGGCTGCCTAG

Protein Analysis

310

Amino Acids

33.43

Weight (kDa)

8.28

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 107 - 283 1.2e-80 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016629)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02560
fragaria_vesca FvH4_5g39050
malus_domestica MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica Prupe.8G265800_v2.0.a1
pyrus_communis pycom03g23210 pycom11g27350
rosa_chinensis RchiOBHm_Chr7g0241011
rosa_laevigata RLG00000000604
rosa_multiflora Rmu_sc0003187.1_g000009
rosa_roxburghii Rroxscaffold_3G00219320
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7BG467700
rosa_wichuraiana Rw7G041930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 2 cut(s) 223, 887
AciI CCGC 4 cut(s) 121, 308, 887, 920
AclWI GGATC 4 cut(s) 437, 493, 637, 795
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 231, 472, 628
AfaI GTAC 3 cut(s) 275, 746, 898
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 659, 784
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 4 cut(s) 46, 142, 633, 853
AhdI GACNNNNNGTC 1 cut(s) 539
AjiI CACGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 8 cut(s) 75, 191, 349, 383, 569, 621, 665, 866
AluI AGCT 8 cut(s) 75, 191, 349, 383, 569, 621, 665, 866
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 3 cut(s) 39, 109, 547
AlwI GGATC 4 cut(s) 437, 493, 637, 795
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 3 cut(s) 504, 559, 816
ApeKI GCWGC 3 cut(s) 566, 709, 923
ApoI RAATTY 3 cut(s) 231, 472, 628
AsiGI ACCGGT 1 cut(s) 752
AspLEI GCGC 3 cut(s) 7, 292, 327
AspS9I GGNCC 2 cut(s) 237, 302
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 91, 110, 196
AvaII GGWCC 2 cut(s) 237, 302
BaeGI GKGCMC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 506
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 3 cut(s) 578, 696, 910
BccI CCATC 3 cut(s) 271, 654, 833
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 3 cut(s) 39, 109, 547
BfaI CTAG 5 cut(s) 72, 132, 563, 570, 928
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 4 cut(s) 567, 710, 921, 924
BlsI GCNGC 4 cut(s) 568, 711, 922, 925
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 2 cut(s) 216, 480
Bme18I GGWCC 2 cut(s) 237, 302
BmeRI GACNNNNNGTC 1 cut(s) 539
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 237, 302
BmiI GGNNCC 2 cut(s) 213, 303
BmrFI CCNGG 2 cut(s) 216, 480
BmsI GCATC 2 cut(s) 424, 721
BpmI CTGGAG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 641
BsaJI CCNNGG 2 cut(s) 52, 819
BsaWI WCCGGW 2 cut(s) 181, 752
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 784
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 1 cut(s) 881
Bse8I GATNNNNATC 1 cut(s) 641
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 52, 819
BseGI GGATG 1 cut(s) 394
BseJI GATNNNNATC 1 cut(s) 641
BseLI CCNNNNNNNGG 2 cut(s) 659, 784
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 881
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 3 cut(s) 578, 696, 910
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 223, 887
BshFI GGCC 3 cut(s) 506, 561, 818
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 3 cut(s) 182, 215, 753
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 659, 784
BsmAI GTCTC 3 cut(s) 39, 109, 547
BsmBI CGTCTC 2 cut(s) 39, 109
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 3 cut(s) 506, 561, 818
Bsp1286I GDGCHC 2 cut(s) 214, 667
Bsp143I GATC 5 cut(s) 442, 485, 642, 771, 787
BspACI CCGC 4 cut(s) 121, 308, 887, 920
BspANI GGCC 3 cut(s) 506, 561, 818
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 2 cut(s) 223, 887
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 213, 303
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 4 cut(s) 437, 493, 637, 795
BspT107I GGYRCC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 1 cut(s) 881
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 2 cut(s) 52, 819
BssMI GATC 5 cut(s) 442, 485, 642, 771, 787
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 4 cut(s) 103, 550, 615, 876
BstC8I GCNNGC 2 cut(s) 598, 623
BstDEI CTNAG 2 cut(s) 38, 590
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 2 cut(s) 223, 887
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 3 cut(s) 7, 292, 327
BstKTI GATC 5 cut(s) 445, 488, 645, 774, 790
BstMAI GTCTC 3 cut(s) 39, 109, 547
BstMBI GATC 5 cut(s) 442, 485, 642, 771, 787
BstMWI GCNNNNNNNGC 4 cut(s) 316, 355, 503, 815
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 2 cut(s) 214, 478
BstSFI CTRYAG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 214
BstUI CGCG 2 cut(s) 223, 887
BstV1I GCAGC 3 cut(s) 578, 696, 910
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 3 cut(s) 506, 561, 818
BtgZI GCGATG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 598, 623
CciI TCATGA 1 cut(s) 801
CfoI GCGC 3 cut(s) 7, 292, 327
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 237, 302
Csp6I GTAC 3 cut(s) 274, 745, 897
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 2 cut(s) 463, 802
CviQI GTAC 3 cut(s) 274, 745, 897
DdeI CTNAG 2 cut(s) 38, 590
DpnI GATC 5 cut(s) 444, 487, 644, 773, 789
DpnII GATC 5 cut(s) 442, 485, 642, 771, 787
DriI GACNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 237, 302
Eco47III AGCGCT 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 2 cut(s) 39, 109
FaeI CATG 2 cut(s) 466, 805
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 1 cut(s) 309
FatI CATG 2 cut(s) 462, 801
Fnu4HI GCNGC 4 cut(s) 567, 710, 921, 924
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 4 cut(s) 567, 710, 921, 924
FspBI CTAG 5 cut(s) 72, 132, 563, 570, 928
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 3 cut(s) 6, 291, 326
GluI GCNGC 4 cut(s) 567, 710, 921, 924
GsaI CCCAGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 506, 561, 818
HapII CCGG 3 cut(s) 182, 215, 753
HhaI GCGC 3 cut(s) 7, 292, 327
Hin1II CATG 2 cut(s) 466, 805
Hin6I GCGC 3 cut(s) 5, 290, 325
HinP1I GCGC 3 cut(s) 5, 290, 325
HinfI GANTC 5 cut(s) 42, 363, 760, 853, 905
HpaII CCGG 3 cut(s) 182, 215, 753
HphI GGTGA 3 cut(s) 91, 110, 196
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 41, 333, 533, 759
Hpy188III TCNNGA 2 cut(s) 791, 802
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 138, 221
HpyCH4III ACNGT 4 cut(s) 103, 550, 615, 876
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 6 cut(s) 172, 256, 319, 712, 767, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 316, 355, 503, 815
HpyF3I CTNAG 2 cut(s) 38, 590
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 466, 805
HspAI GCGC 3 cut(s) 5, 290, 325
Kzo9I GATC 5 cut(s) 442, 485, 642, 771, 787
LmnI GCTCC 3 cut(s) 86, 380, 662
Lsp1109I GCAGC 3 cut(s) 578, 696, 910
LweI GCATC 2 cut(s) 424, 721
MaeI CTAG 5 cut(s) 72, 132, 563, 570, 928
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 490
MalI GATC 5 cut(s) 444, 487, 644, 773, 789
MboI GATC 5 cut(s) 442, 485, 642, 771, 787
MboII GAAGA 3 cut(s) 154, 258, 790
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 214, 667
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 3 cut(s) 231, 472, 628
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 556
Mox20I TGGCCA 1 cut(s) 506
MscI TGGCCA 1 cut(s) 506
MseI TTAA 1 cut(s) 728
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 506
MspI CCGG 3 cut(s) 182, 215, 753
MspR9I CCNGG 2 cut(s) 216, 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 2 cut(s) 223, 887
MwoI GCNNNNNNNGC 4 cut(s) 316, 355, 503, 815
NciI CCSGG 1 cut(s) 216
NdeII GATC 5 cut(s) 442, 485, 642, 771, 787
NlaIII CATG 2 cut(s) 466, 805
NlaIV GGNNCC 2 cut(s) 213, 303
NmeAIII GCCGAG 1 cut(s) 33
NsbI TGCGCA 1 cut(s) 291
PagI TCATGA 1 cut(s) 801
PfeI GAWTC 4 cut(s) 42, 363, 853, 905
PflFI GACNNNGTC 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 4 cut(s) 568, 711, 922, 925
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PsiI TTATAA 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 213, 303
PspPI GGNCC 2 cut(s) 237, 302
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 300
RsaI GTAC 3 cut(s) 275, 746, 898
RsaNI GTAC 3 cut(s) 274, 745, 897
RseI CAYNNNNRTG 1 cut(s) 467
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 1 cut(s) 728
SatI GCNGC 4 cut(s) 567, 710, 921, 924
Sau3AI GATC 5 cut(s) 442, 485, 642, 771, 787
Sau96I GGNCC 2 cut(s) 237, 302
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 2 cut(s) 216, 480
SduI GDGCHC 2 cut(s) 214, 667
SfaNI GCATC 2 cut(s) 424, 721
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 237, 302
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
Sse9I AATT 3 cut(s) 231, 472, 628
SsiI CCGC 4 cut(s) 121, 308, 887, 920
SspMI CTAG 5 cut(s) 72, 132, 563, 570, 928
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 2 cut(s) 214, 478
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 4 cut(s) 103, 550, 615, 876
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 231, 472, 628
TatI WGTACW 1 cut(s) 896
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 4 cut(s) 42, 363, 853, 905
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TseI GCWGC 3 cut(s) 566, 709, 923
TspDTI ATGAA 3 cut(s) 717, 790, 918
TspGWI ACGGA 1 cut(s) 800
Tth111I GACNNNGTC 1 cut(s) 300
VpaK11BI GGWCC 2 cut(s) 237, 302
XapI RAATTY 3 cut(s) 231, 472, 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XspI CTAG 5 cut(s) 72, 132, 563, 570, 928
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.