RchiOBHm_Chr7g0241011

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016629
Physical Location & Seq
Forward (+)
66994614 .. 66998103
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21601

Sequence Viewer

Length: 933 bp
ATGGCGCAGACCTGCGTTTCCACATCGGCCTCCTCCTCTCTCAGATTCAACTCCCTCGGCTTCGCTCTAAACCCTAGCTCTTGTTCCCAGCCACACAGCCTCACCGTCTCTCTCCCCTCTCAACGCTTTCCTTCAAGGAAGTTGAAGAAGTTAGTTGGGAATAGGAAAGGTCTCCAGAGTTCTCCGGTGAAGGCTGTCTATGATGAATTTTGGGCACCGGGTTCTCGTGAAGGAATTTGGTCCATAAGGGAGGATTTGCAAGTTCCATCTTCGCCATACTTTCCTGCTTATGCACAGGGACAGGGTCCGCCGCCTATGGTGCAAGAACGCTTTCAGAGTGTTATTAGTCAGCTTTTCCAGCATAGAATCATTCGTTGTGGGGGAGCTGTGGATGATGATATGGCAAATATAATTGTCGCTCAGCTTCTTTATCTTGATGCTGTTGATCCTAAAAAGGATATTGTCATGTATGTGAATTCACCTGGAGGATCTGTTACTGCTGGTATGGCCATTTTCGACACTATGAGGCATATCCGACCTGATGTCTCTACTGTGTGTGTTGGACTAGCAGCTAGTATGGGGGCTTTCCTGCTTAGCGCTGGCACCAAAGGAAAACGGTACAGCTTGCCAAATTCAAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCACAAGGCAAACTTAAATGGTTATCTCTCCTACCACACTGGTCAAAGTCTTGAAAAGATCAACCAAGACACAGATCGTGATTTCTTCATGAGTGCAAAGGAGGCCAAGGAGTATGGGCTTATAGATGGTGTGATATTGAATCCTCTCAAAGCTCTCCAACCGTTGCCAGTTGCAGTAGAGAGTACTGATGAATCCAGTGAGAAAGCTGTTGCCTAG

Protein Analysis

310

Amino Acids

33.63

Weight (kDa)

7.7

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 108 - 284 4.2e-81 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016629)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02560
fragaria_vesca FvH4_5g39050
malus_domestica MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica Prupe.8G265800_v2.0.a1
pyrus_communis pycom03g23210 pycom11g27350
rosa_chinensis RchiOBHm_Chr7g0241011
rosa_laevigata RLG00000000604
rosa_multiflora Rmu_sc0003187.1_g000009
rosa_roxburghii Rroxscaffold_3G00219320
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7BG467700
rosa_wichuraiana Rw7G041930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 2 cut(s) 214, 602
AciI CCGC 2 cut(s) 308, 311
AclWI GGATC 3 cut(s) 440, 496, 640
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 4 cut(s) 206, 234, 475, 631
AfaI GTAC 2 cut(s) 620, 901
AfeI AGCGCT 1 cut(s) 598
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 6 cut(s) 49, 135, 145, 636, 770, 856
AhdI GACNNNNNGTC 1 cut(s) 542
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 9 cut(s) 78, 352, 386, 424, 572, 624, 668, 869, 923
AluI AGCT 9 cut(s) 78, 352, 386, 424, 572, 624, 668, 869, 923
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 3 cut(s) 112, 176, 550
AlwI GGATC 3 cut(s) 440, 496, 640
Aor51HI AGCGCT 1 cut(s) 598
AoxI GGCC 3 cut(s) 27, 507, 819
ApeKI GCWGC 2 cut(s) 569, 712
ApoI RAATTY 4 cut(s) 206, 234, 475, 631
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 7, 599
AspS9I GGNCC 2 cut(s) 240, 305
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 94, 199, 471
AvaII GGWCC 2 cut(s) 240, 305
BaeGI GKGCMC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 509
BanI GGYRCC 2 cut(s) 214, 602
BanII GRGCYC 1 cut(s) 670
BauI CACGAG 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 581, 699
BccI CCATC 3 cut(s) 274, 657, 836
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 3 cut(s) 112, 176, 550
BfaI CTAG 4 cut(s) 75, 566, 573, 931
BfoI RGCGCY 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 3 cut(s) 311, 570, 713
BlpI GCTNAGC 2 cut(s) 420, 593
BlsI GCNGC 3 cut(s) 312, 571, 714
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 219, 483
Bme18I GGWCC 2 cut(s) 240, 305
BmeRI GACNNNNNGTC 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 240, 305
BmiI GGNNCC 3 cut(s) 216, 306, 604
BmrFI CCNGG 2 cut(s) 219, 483
BmsI GCATC 2 cut(s) 427, 724
BpmI CTGGAG 2 cut(s) 158, 504
Bpu1102I GCTNAGC 2 cut(s) 420, 593
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 644
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 55, 822
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 3 cut(s) 760, 884, 912
Bse8I GATNNNNATC 1 cut(s) 644
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 55, 822
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 644
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 2 cut(s) 55, 434
BseNI ACTGG 3 cut(s) 760, 884, 912
BseRI GAGGAG 2 cut(s) 22, 25
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 2 cut(s) 581, 699
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 3 cut(s) 29, 509, 821
BshNI GGYRCC 2 cut(s) 214, 602
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 185, 218
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 3 cut(s) 112, 176, 550
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 3 cut(s) 29, 509, 821
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 217, 670
Bsp143I GATC 5 cut(s) 445, 488, 645, 774, 790
Bsp1720I GCTNAGC 2 cut(s) 420, 593
BspACI CCGC 2 cut(s) 308, 311
BspANI GGCC 3 cut(s) 29, 509, 821
BspCNI CTCAG 2 cut(s) 54, 433
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 3 cut(s) 216, 306, 604
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 3 cut(s) 440, 496, 640
BspT107I GGYRCC 2 cut(s) 214, 602
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 3 cut(s) 760, 884, 912
BssECI CCNNGG 2 cut(s) 55, 822
BssMI GATC 5 cut(s) 445, 488, 645, 774, 790
BssSI CACGAG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 106, 553, 618, 879
BstC8I GCNNGC 2 cut(s) 601, 626
BstDEI CTNAG 3 cut(s) 41, 420, 593
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 2 cut(s) 7, 599
BstKTI GATC 5 cut(s) 448, 491, 648, 777, 793
BstMAI GTCTC 3 cut(s) 112, 176, 550
BstMBI GATC 5 cut(s) 445, 488, 645, 774, 790
BstMWI GCNNNNNNNGC 4 cut(s) 319, 358, 506, 818
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 217, 481
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 581, 699
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 3 cut(s) 29, 509, 821
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 753, 919
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 601, 626
CciI TCATGA 1 cut(s) 804
CfoI GCGC 2 cut(s) 7, 599
Cfr13I GGNCC 2 cut(s) 240, 305
Csp6I GTAC 2 cut(s) 619, 900
CviAII CATG 2 cut(s) 466, 805
CviQI GTAC 2 cut(s) 619, 900
DdeI CTNAG 3 cut(s) 41, 420, 593
DpnI GATC 5 cut(s) 447, 490, 647, 776, 792
DpnII GATC 5 cut(s) 445, 488, 645, 774, 790
DriI GACNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 507
Eam1105I GACNNNNNGTC 1 cut(s) 542
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 240, 305
Eco47III AGCGCT 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 469, 808
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 465, 804
Fnu4HI GCNGC 3 cut(s) 311, 570, 713
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 3 cut(s) 311, 570, 713
FspBI CTAG 4 cut(s) 75, 566, 573, 931
GlaI GCGC 2 cut(s) 6, 598
GluI GCNGC 3 cut(s) 311, 570, 713
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 158, 504
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 3 cut(s) 29, 509, 821
HapII CCGG 2 cut(s) 185, 218
HhaI GCGC 2 cut(s) 7, 599
Hin1II CATG 2 cut(s) 469, 808
Hin6I GCGC 2 cut(s) 5, 597
HinP1I GCGC 2 cut(s) 5, 597
HinfI GANTC 4 cut(s) 45, 366, 856, 908
HpaII CCGG 2 cut(s) 185, 218
HphI GGTGA 3 cut(s) 94, 199, 471
Hpy188I TCNGA 3 cut(s) 44, 336, 536
Hpy188III TCNNGA 6 cut(s) 175, 227, 434, 767, 794, 805
HpyAV CCTTC 3 cut(s) 141, 184, 224
HpyCH4III ACNGT 4 cut(s) 106, 553, 618, 879
HpyCH4V TGCA 6 cut(s) 259, 293, 322, 715, 812, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 358, 506, 818
HpyF3I CTNAG 3 cut(s) 41, 420, 593
Hsp92II CATG 2 cut(s) 469, 808
HspAI GCGC 2 cut(s) 5, 597
Kzo9I GATC 5 cut(s) 445, 488, 645, 774, 790
LmnI GCTCC 2 cut(s) 383, 665
Lsp1109I GCAGC 2 cut(s) 581, 699
LweI GCATC 2 cut(s) 427, 724
MaeI CTAG 4 cut(s) 75, 566, 573, 931
MaeIII GTNAC 1 cut(s) 493
MalI GATC 5 cut(s) 447, 490, 647, 776, 792
MboI GATC 5 cut(s) 445, 488, 645, 774, 790
MboII GAAGA 3 cut(s) 157, 261, 793
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 2 cut(s) 217, 670
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 5 cut(s) 206, 234, 411, 475, 631
MluNI TGGCCA 1 cut(s) 509
MmeI TCCRAC 3 cut(s) 541, 559, 898
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 330
MscI TGGCCA 1 cut(s) 509
MseI TTAA 1 cut(s) 731
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 509
MspI CCGG 2 cut(s) 185, 218
MspR9I CCNGG 2 cut(s) 219, 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 4 cut(s) 319, 358, 506, 818
NciI CCSGG 1 cut(s) 219
NdeII GATC 5 cut(s) 445, 488, 645, 774, 790
NlaIII CATG 2 cut(s) 469, 808
NlaIV GGNNCC 3 cut(s) 216, 306, 604
NmeAIII GCCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 4 cut(s) 45, 366, 856, 908
PflFI GACNNNGTC 1 cut(s) 303
PkrI GCNGC 3 cut(s) 312, 571, 714
Psp124BI GAGCTC 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 216, 306, 604
PspPI GGNCC 2 cut(s) 240, 305
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 1 cut(s) 303
RsaI GTAC 2 cut(s) 620, 901
RsaNI GTAC 2 cut(s) 619, 900
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 1 cut(s) 731
SatI GCNGC 3 cut(s) 311, 570, 713
Sau3AI GATC 5 cut(s) 445, 488, 645, 774, 790
Sau96I GGNCC 2 cut(s) 240, 305
ScaI AGTACT 1 cut(s) 901
ScrFI CCNGG 2 cut(s) 219, 483
SduI GDGCHC 2 cut(s) 217, 670
SfaNI GCATC 2 cut(s) 427, 724
SinI GGWCC 2 cut(s) 240, 305
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
Sse9I AATT 5 cut(s) 206, 234, 411, 475, 631
SsiI CCGC 2 cut(s) 308, 311
SspMI CTAG 4 cut(s) 75, 566, 573, 931
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 217, 481
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 4 cut(s) 106, 553, 618, 879
TaqI TCGA 1 cut(s) 516
TasI AATT 5 cut(s) 206, 234, 411, 475, 631
TatI WGTACW 1 cut(s) 899
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 4 cut(s) 45, 366, 856, 908
Tru1I TTAA 1 cut(s) 731
Tru9I TTAA 1 cut(s) 731
TscAI CASTG 2 cut(s) 760, 919
TseI GCWGC 2 cut(s) 569, 712
TspDTI ATGAA 4 cut(s) 219, 720, 793, 921
TspRI CASTG 2 cut(s) 760, 919
Tth111I GACNNNGTC 1 cut(s) 303
VpaK11BI GGWCC 2 cut(s) 240, 305
XapI RAATTY 4 cut(s) 206, 234, 475, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 4 cut(s) 75, 566, 573, 931
ZrmI AGTACT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.