Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

37604875 .. 37608275

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0341200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGACAATTGCAAAGCAGATAATGGAGTCTCTCCCAGATGCTATTGTTCAATACATATTGTCGTACATGAATAATGCCCGAGATGTGGCACTTTGTAACTGTGTATCCAAGCGATGGAAGGACTCAATTCCATATATACGGAGCCTTTTCTTCCCTAGGAACTCCTTTGATAATCTCACAGGCAGTGACACTCCTGATGACATTGTATTGAAGATGATTTCTCTGATTGAAAGATTGGAAAATCTTGTTGTTTATAGCCCATTTTCGGGTGCCGGGCTTGCTTCATGGTTGACGCTGATAGGTCCCTCCCTCAGGTATCTTGAGCTTCGAATGGACAATCTTGCTGAACAAGAGGTCTGCAATGAACGCCCTTCGAAATTGGATTGCTTAACTGCTGCAAAGAGTTTGGAGTCTTTAAAACTTTGGGGAGTCTTAATGACCCGTTCCCCCAAGTGGGATGTCTTCCAGAAACTCAAGAACCTTGAAATTGTTGGTGCAAGGTTGGAGGATCCTGCGCTGTCAACCGTGCTTCAGGCCTGTCCTAATCTGACCAAACTGTTGCTGCTTGGTTGCGAAGGAGTCGTTGCAGTTTCAATTGAGTTGCCACATCTGGAGCAGTGTAAGCTAGACTTCTACGGCTTGGGCAATTGCTCATTTTCTATGAACTGCCCAAAAATTGAGGTCCTTGAGGTGCAAGGATGTAGTTGGATTCGGGTTCAGAAGACAAAGCACTTGAGGAATCTTTCAATTGCCAATAATGCAGGGAGAGTCTACATGGTTGATTTTGAAAAACTTGTGGCTCTGGAGTCCTTATCCATTAGGGGCGTCCAATGGTGTTGGGGTGCAATAAGCAGTATGCTGCAGTGGGCAAGCGAAGTAAAGCACCTCTATATGAAGGTGGAATTCACAGGAGATTTCGAGACTCTTCAACCCTTTCCAGAGGTTGACTTTGTTGATTTTTTTAATAATCATCCAAAGCTGCAAAATTTTGACATCCATGGAGCCATGTTTGCAGCTCTTTGTCAGAAGAACAGTCTGAAAAATGTTGATTCAGGATTTCTAATTCCTTGTCTGGAGTCAGTGGTGATCACAGTGCGATCACCACTGAATGCTGAACAGAAAATGAGCACTCTTGAGTCCTTGTTGAAGTATGGGAAGAATCTCAAGAGCATGGTGATCAAGGTTCTTCAGATGAAGAGTAACCATAGCAGCGCAGATGATTTCTTTGATGAGATATGCAGGTTTACATGCATGAACCGAAAGATAGTTAGAATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

426

Amino Acids

48.27

Weight (kDa)

6.62

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	9 - 43	5.5e-06	F-box-like
LRR_At1g61320_AtMIF1	PF23622	92 - 333	2.5e-06	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	128 - 229	3.2e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1230
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	771
AclWI	GGATC	2 cut(s)	503, 516
AcsI	RAATTY	2 cut(s)	902, 985
AcuI	CTGAAG	2 cut(s)	515, 1172
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	7 cut(s)	85, 114, 265, 266, 312, 453, 454
AgsI	TTSAA	9 cut(s)	50, 211, 230, 485, 594, 747, 788, 929, 1147
AluBI	AGCT	4 cut(s)	325, 625, 979, 1016
AluI	AGCT	4 cut(s)	325, 625, 979, 1016
Alw21I	GWGCWC	1 cut(s)	1130
Alw26I	GTCTC	2 cut(s)	33, 914
AlwI	GGATC	2 cut(s)	503, 516
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	6 cut(s)	395, 562, 859, 979, 1013, 1209
ApoI	RAATTY	2 cut(s)	902, 985
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	517, 1214
AspS9I	GGNCC	2 cut(s)	302, 682
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	1092, 1096, 1186
AsuII	TTCGAA	2 cut(s)	328, 374
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	302, 682
AvrII	CCTAGG	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	454, 728
Bbv12I	GWGCWC	1 cut(s)	1130
BbvI	GCAGC	6 cut(s)	382, 549, 846, 966, 1025, 1221
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	2 cut(s)	1086, 1176
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	33, 914
BfaI	CTAG	2 cut(s)	156, 626
BfmI	CTRYAG	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	1230
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	6 cut(s)	396, 563, 860, 980, 1014, 1210
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	6 cut(s)	397, 564, 861, 981, 1015, 1211
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	302, 682
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	302, 682
BmiI	GGNNCC	5 cut(s)	143, 271, 304, 510, 1003
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	454, 728
BpmI	CTGGAG	3 cut(s)	632, 824, 1094
Bpu14I	TTCGAA	2 cut(s)	328, 374
BpuEI	CTTGAG	6 cut(s)	341, 458, 707, 754, 1148, 1154
BpuMI	CCSGG	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	825
BsaJI	CCNNGG	2 cut(s)	155, 997
Bsc4I	CCNNNNNNNGG	7 cut(s)	85, 114, 265, 266, 312, 453, 454
Bse21I	CCTNAGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	155, 997
BseGI	GGATG	4 cut(s)	463, 704, 970, 993
BseLI	CCNNNNNNNGG	7 cut(s)	85, 114, 265, 266, 312, 453, 454
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	325
BseXI	GCAGC	6 cut(s)	382, 549, 846, 966, 1025, 1221
BshFI	GGCC	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	1130
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	7 cut(s)	85, 114, 265, 266, 312, 453, 454
BsmAI	GTCTC	2 cut(s)	33, 914
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	78
Bsp119I	TTCGAA	2 cut(s)	328, 374
Bsp1286I	GDGCHC	1 cut(s)	1130
Bsp143I	GATC	4 cut(s)	508, 1086, 1097, 1176
Bsp19I	CCATGG	1 cut(s)	997
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	5 cut(s)	143, 271, 304, 510, 1003
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	1 cut(s)	1230
BspPI	GGATC	2 cut(s)	503, 516
BspT104I	TTCGAA	2 cut(s)	328, 374
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	155, 997
BssMI	GATC	4 cut(s)	508, 1086, 1097, 1176
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	155, 997
Bst4CI	ACNGT	5 cut(s)	101, 526, 558, 1034, 1093
Bst6I	CTCTTC	2 cut(s)	930, 1190
BstACI	GRCGYC	1 cut(s)	825
BstBI	TTCGAA	2 cut(s)	328, 374
BstC8I	GCNNGC	2 cut(s)	279, 871
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	997
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	4 cut(s)	463, 704, 970, 993
BstHHI	GCGC	2 cut(s)	517, 1214
BstKTI	GATC	4 cut(s)	511, 1089, 1100, 1179
BstMAI	GTCTC	2 cut(s)	33, 914
BstMBI	GATC	4 cut(s)	508, 1086, 1097, 1176
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 366, 622, 758, 1010
BstNSI	RCATGY	1 cut(s)	1251
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	860
BstV1I	GCAGC	6 cut(s)	382, 549, 846, 966, 1025, 1221
BstV2I	GAAGAC	2 cut(s)	454, 728
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	997
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	4 cut(s)	463, 704, 970, 993
BtsI	GCAGTG	3 cut(s)	190, 623, 869
BtsIMutI	CAGTG	6 cut(s)	190, 623, 869, 1086, 1098, 1103
BveI	ACCTGC	1 cut(s)	1230
Cac8I	GCNNGC	2 cut(s)	279, 871
CfoI	GCGC	2 cut(s)	517, 1214
Cfr13I	GGNCC	2 cut(s)	302, 682
CseI	GACGC	2 cut(s)	301, 814
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	8 cut(s)	67, 285, 775, 998, 1006, 1171, 1248, 1252
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	4 cut(s)	510, 1088, 1099, 1178
DpnII	GATC	4 cut(s)	508, 1086, 1097, 1176
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	930, 1190
EarI	CTCTTC	2 cut(s)	930, 1190
Eco130I	CCWWGG	2 cut(s)	155, 997
Eco147I	AGGCCT	1 cut(s)	536
Eco47I	GGWCC	2 cut(s)	302, 682
Eco57I	CTGAAG	2 cut(s)	515, 1172
Eco81I	CCTNAGG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoO109I	RGGNCCY	2 cut(s)	302, 682
EcoRI	GAATTC	1 cut(s)	902
EcoT14I	CCWWGG	2 cut(s)	155, 997
EcoT22I	ATGCAT	1 cut(s)	1253
ErhI	CCWWGG	2 cut(s)	155, 997
FaeI	CATG	8 cut(s)	70, 288, 778, 1001, 1009, 1174, 1251, 1255
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	8 cut(s)	66, 284, 774, 997, 1005, 1170, 1247, 1251
FbaI	TGATCA	2 cut(s)	1086, 1176
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	6 cut(s)	396, 563, 860, 980, 1014, 1210
FokI	GGATG	4 cut(s)	470, 711, 957, 980
Fsp4HI	GCNGC	6 cut(s)	396, 563, 860, 980, 1014, 1210
FspBI	CTAG	2 cut(s)	156, 626
GlaI	GCGC	2 cut(s)	516, 1213
GluI	GCNGC	6 cut(s)	396, 563, 860, 980, 1014, 1210
GsuI	CTGGAG	3 cut(s)	632, 824, 1094
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	301, 814
HhaI	GCGC	2 cut(s)	517, 1214
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	70, 288, 778, 1001, 1009, 1174, 1251, 1255
Hin6I	GCGC	2 cut(s)	515, 1212
HinP1I	GCGC	2 cut(s)	515, 1212
HincII	GTYRAC	3 cut(s)	291, 522, 946
HindII	GTYRAC	3 cut(s)	291, 522, 946
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	1092, 1096, 1186
Hpy166II	GTNNAC	5 cut(s)	291, 522, 772, 946, 1245
Hpy188I	TCNGA	6 cut(s)	225, 549, 720, 1026, 1038, 1191
Hpy8I	GTNNAC	5 cut(s)	291, 522, 772, 946, 1245
HpyAV	CCTTC	4 cut(s)	112, 381, 569, 889
HpyCH4III	ACNGT	5 cut(s)	101, 526, 558, 1034, 1093
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 366, 622, 758, 1010
HpyF3I	CTNAG	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	8 cut(s)	70, 288, 778, 1001, 1009, 1174, 1251, 1255
HspAI	GCGC	2 cut(s)	515, 1212
Ksp22I	TGATCA	2 cut(s)	1086, 1176
Kzo9I	GATC	4 cut(s)	508, 1086, 1097, 1176
LmnI	GCTCC	3 cut(s)	141, 613, 1001
Lsp1109I	GCAGC	6 cut(s)	382, 549, 846, 966, 1025, 1221
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	156, 626
MaeIII	GTNAC	3 cut(s)	95, 185, 1199
MalI	GATC	4 cut(s)	510, 1088, 1099, 1178
MboI	GATC	4 cut(s)	508, 1086, 1097, 1176
MboII	GAAGA	9 cut(s)	142, 223, 454, 733, 917, 1039, 1168, 1178, 1207
MfeI	CAATTG	4 cut(s)	6, 594, 646, 747
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	1130
MmeI	TCCRAC	2 cut(s)	483, 686
MnlI	CCTC	9 cut(s)	316, 320, 346, 499, 673, 682, 729, 896, 934
Mph1103I	ATGCAT	1 cut(s)	1253
MseI	TTAA	4 cut(s)	389, 416, 434, 963
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	4 cut(s)	6, 594, 646, 747
Mva1269I	GAATGC	1 cut(s)	1114
MwoI	GCNNNNNNNGC	5 cut(s)	278, 366, 622, 758, 1010
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	997
NdeII	GATC	4 cut(s)	508, 1086, 1097, 1176
NlaIII	CATG	8 cut(s)	70, 288, 778, 1001, 1009, 1174, 1251, 1255
NlaIV	GGNNCC	5 cut(s)	143, 271, 304, 510, 1003
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	1253
NspI	RCATGY	1 cut(s)	1251
NspV	TTCGAA	2 cut(s)	328, 374
PceI	AGGCCT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	4 cut(s)	709, 739, 1049, 1159
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	6 cut(s)	397, 564, 861, 981, 1015, 1211
PpuMI	RGGWCCY	2 cut(s)	302, 682
Psp5II	RGGWCCY	2 cut(s)	302, 682
PspN4I	GGNNCC	5 cut(s)	143, 271, 304, 510, 1003
PspPI	GGNCC	2 cut(s)	302, 682
PspPPI	RGGWCCY	2 cut(s)	302, 682
PstI	CTGCAG	1 cut(s)	864
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	389, 416, 434, 963
SatI	GCNGC	6 cut(s)	396, 563, 860, 980, 1014, 1210
Sau3AI	GATC	4 cut(s)	508, 1086, 1097, 1176
Sau96I	GGNCC	2 cut(s)	302, 682
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	1130
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	860
SfuI	TTCGAA	2 cut(s)	328, 374
SinI	GGWCC	2 cut(s)	302, 682
SmlI	CTYRAG	6 cut(s)	320, 473, 686, 733, 1133, 1163
SmoI	CTYRAG	6 cut(s)	320, 473, 686, 733, 1133, 1163
SseBI	AGGCCT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	156, 626
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	155, 997
TaaI	ACNGT	5 cut(s)	101, 526, 558, 1034, 1093
TaqI	TCGA	3 cut(s)	328, 374, 918
TfiI	GAWTC	4 cut(s)	709, 739, 1049, 1159
Tru1I	TTAA	4 cut(s)	389, 416, 434, 963
Tru9I	TTAA	4 cut(s)	389, 416, 434, 963
TscAI	CASTG	6 cut(s)	190, 623, 869, 1086, 1098, 1110
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	6 cut(s)	395, 562, 859, 979, 1013, 1209
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	7 cut(s)	83, 273, 378, 677, 908, 1208, 1268
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	6 cut(s)	190, 623, 869, 1086, 1098, 1110
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	302, 682
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	902, 985
XceI	RCATGY	1 cut(s)	1251
XmaJI	CCTAGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	771
XspI	CTAG	2 cut(s)	156, 626
Zsp2I	ATGCAT	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.