Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

61976042 .. 61976614

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG405400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTTTCAAATCCCTCTTCTCCCGGAAGAAGAAATCCACTCCCTCCAGCGCCGGCGCCGCTCAGCCGGCGGTGATGCGGTCACCGTCGTTCAACACGCGGGCGCAGATCGCCGAGCTGGAGCAGGTCTTCAAGAAATTCGACGTCAACGGCGACGGCAAGATCTCGTCGTCGGAGCTCGGCGCGATCATGGGCAGCCTGGGCCACCCGGCGACGGAGGACGAGCTCCGGTCCATGATCCTCGAGGTCGACGCCGACGGCGACGGCTTCATCGACTTCAAGGAGTTCGTGGAGCTCAACACCAACGGGATCGACTCCGCCGAGGCGTTGCAGAATCTCAAGGACGCCTTCTCCGTCTACGACATCGACGGCAACGGCTCGATCTCCGCGGAGGAGCTTTTCGAGGTGCTGAGGAGCTTGGGCGACGAGTGCTCGATCGGCGAGTGCCGGAAAATGATCAGCGGCGTCGATGCCAACGGCGACGGTATGATCAATTTTGAGGAGTTTAAAGAAATGATGATGATGGGGTCGCGTTATGAGAATAATGCTCAACCTCAACCTGTTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

190

Amino Acids

20.6

Weight (kDa)

4.45

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	39 - 66	6.8e-08	EF hand domain
EF-hand_7	PF13499	39 - 99	6.9e-15	EF-hand domain pair
EF-hand_6	PF13405	39 - 68	9.5e-08	EF-hand domain
EF-hand_5	PF13202	40 - 64	5.1e-08	EF hand
EF-hand_8	PF13833	52 - 99	2.2e-06	EF-hand domain pair
EF-hand_1	PF00036	75 - 99	6.3e-07	EF hand domain
EF-hand_7	PF13499	112 - 174	1.3e-14	EF-hand domain pair
EF-hand_1	PF00036	113 - 140	8.3e-07	EF hand domain
EF-hand_6	PF13405	113 - 141	8.2e-08	EF-hand domain
EF-hand_8	PF13833	125 - 173	1.1e-07	EF-hand domain pair
EF-hand_1	PF00036	148 - 175	7.1e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AbsI	CCTCGAGG	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	249, 357
AccII	CGCG	4 cut(s)	100, 185, 389, 532
AciI	CCGC	8 cut(s)	60, 71, 79, 100, 318, 387, 389, 462
AclWI	GGATC	2 cut(s)	232, 317
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	10, 94, 133, 280
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	6 cut(s)	118, 178, 226, 295, 397, 417
AluI	AGCT	6 cut(s)	118, 178, 226, 295, 397, 417
Alw21I	GWGCWC	4 cut(s)	180, 228, 297, 434
AlwI	GGATC	2 cut(s)	232, 317
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	4 cut(s)	53, 59, 106, 185
AspS9I	GGNCC	2 cut(s)	202, 231
AsuC2I	CCSGG	2 cut(s)	25, 209
AsuHPI	GGTGA	2 cut(s)	75, 85
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	3 cut(s)	180, 228, 297
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	4 cut(s)	180, 228, 297, 434
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	7 cut(s)	166, 172, 274, 280, 385, 391, 493
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	2 cut(s)	456, 489
BcnI	CCSGG	2 cut(s)	25, 209
BfoI	RGCGCY	2 cut(s)	54, 60
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	60, 196, 463
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	61, 197, 464
Bme1390I	CCNGG	3 cut(s)	25, 200, 209
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	202, 231
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	25, 200, 209
BmsI	GCATC	2 cut(s)	66, 460
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	2 cut(s)	31, 140
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	2 cut(s)	25, 209
BsaHI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
BsaJI	CCNNGG	3 cut(s)	199, 321, 387
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	53, 67
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	199, 321, 387
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	77, 401
BseRI	GAGGAG	3 cut(s)	407, 427, 515
BseXI	GCAGC	1 cut(s)	207
Bsh1236I	CGCG	4 cut(s)	100, 185, 389, 532
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	4 cut(s)	180, 228, 297, 434
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	6 cut(s)	25, 54, 68, 209, 229, 448
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	4 cut(s)	180, 228, 297, 434
Bsp143I	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	8 cut(s)	60, 71, 79, 100, 318, 387, 389, 462
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	76, 402
BspFNI	CGCG	4 cut(s)	100, 185, 389, 532
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	232, 317
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	53, 67
BssAI	RCCGGY	2 cut(s)	53, 67
BssECI	CCNNGG	3 cut(s)	199, 321, 387
BssMI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
BssNI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	87, 485
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
BstC8I	GCNNGC	3 cut(s)	55, 69, 102
BstDEI	CTNAG	2 cut(s)	63, 410
BstDSI	CCRYGG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	100, 185, 389, 532
BstH2I	RGCGCY	2 cut(s)	54, 60
BstHHI	GCGC	4 cut(s)	53, 59, 106, 185
BstKTI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
BstMBI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	23, 198, 207
BstUI	CGCG	4 cut(s)	100, 185, 389, 532
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	55, 69, 102
CfoI	GCGC	4 cut(s)	53, 59, 106, 185
Cfr10I	RCCGGY	2 cut(s)	53, 67
Cfr13I	GGNCC	2 cut(s)	202, 231
Cfr42I	CCGCGG	1 cut(s)	390
CseI	GACGC	3 cut(s)	260, 353, 454
CviAII	CATG	2 cut(s)	190, 235
DdeI	CTNAG	2 cut(s)	63, 410
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	9 cut(s)	110, 164, 188, 239, 311, 383, 437, 458, 491
DpnII	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	3 cut(s)	178, 226, 295
Eco24I	GRGCYC	3 cut(s)	180, 228, 297
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	3 cut(s)	178, 226, 295
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	3 cut(s)	178, 226, 295
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	3 cut(s)	180, 228, 297
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	2 cut(s)	193, 238
FaiI	YATR	4 cut(s)	191, 236, 488, 537
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	2 cut(s)	189, 234
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	2 cut(s)	456, 489
FblI	GTMKAC	2 cut(s)	249, 357
Fnu4HI	GCNGC	3 cut(s)	60, 196, 463
FriOI	GRGCYC	3 cut(s)	180, 228, 297
Fsp4HI	GCNGC	3 cut(s)	60, 196, 463
GlaI	GCGC	4 cut(s)	52, 58, 105, 184
GluI	GCNGC	3 cut(s)	60, 196, 463
GsuI	CTGGAG	2 cut(s)	31, 140
HaeII	RGCGCY	2 cut(s)	54, 60
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	6 cut(s)	25, 54, 68, 209, 229, 448
HgaI	GACGC	3 cut(s)	260, 353, 454
HhaI	GCGC	4 cut(s)	53, 59, 106, 185
Hin1I	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
Hin1II	CATG	2 cut(s)	193, 238
Hin6I	GCGC	4 cut(s)	51, 57, 104, 183
HinP1I	GCGC	4 cut(s)	51, 57, 104, 183
HincII	GTYRAC	2 cut(s)	148, 250
HindII	GTYRAC	2 cut(s)	148, 250
HinfI	GANTC	2 cut(s)	314, 334
HpaII	CCGG	6 cut(s)	25, 54, 68, 209, 229, 448
HphI	GGTGA	2 cut(s)	75, 85
Hpy166II	GTNNAC	3 cut(s)	148, 250, 358
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	3 cut(s)	148, 250, 358
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	87, 485
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
HpyF3I	CTNAG	2 cut(s)	63, 410
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
Hsp92II	CATG	2 cut(s)	193, 238
HspAI	GCGC	4 cut(s)	51, 57, 104, 183
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	2 cut(s)	53, 67
KroNI	GCCGGC	2 cut(s)	55, 69
Ksp22I	TGATCA	2 cut(s)	456, 489
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
LmnI	GCTCC	6 cut(s)	121, 175, 231, 292, 394, 414
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	66, 460
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	9 cut(s)	110, 164, 188, 239, 311, 383, 437, 458, 491
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
MboII	GAAGA	4 cut(s)	10, 40, 43, 121
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	4 cut(s)	180, 228, 297, 434
MluCI	AATT	3 cut(s)	137, 493, 568
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	153
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	53, 67
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	389, 462
MspI	CCGG	6 cut(s)	25, 54, 68, 209, 229, 448
MspR9I	CCNGG	3 cut(s)	25, 200, 209
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	4 cut(s)	100, 185, 389, 532
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
NaeI	GCCGGC	2 cut(s)	55, 69
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	25, 209
NdeII	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
NgoMIV	GCCGGC	2 cut(s)	53, 67
NlaIII	CATG	2 cut(s)	193, 238
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	3 cut(s)	139, 159, 346
NmuCI	GTSAC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	5 cut(s)	150, 258, 270, 318, 351
PdiI	GCCGGC	2 cut(s)	55, 69
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	61, 197, 464
Ple19I	CGATCG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	3 cut(s)	180, 228, 297
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	202, 231
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	438
SacI	GAGCTC	3 cut(s)	180, 228, 297
SacII	CCGCGG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	60, 196, 463
Sau3AI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	25, 200, 209
SduI	GDGCHC	4 cut(s)	180, 228, 297, 434
SfaNI	GCATC	2 cut(s)	66, 460
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	242, 338
SmoI	CTYRAG	2 cut(s)	242, 338
Sse9I	AATT	3 cut(s)	137, 493, 568
SsiI	CCGC	8 cut(s)	60, 71, 79, 100, 318, 387, 389, 462
SspDI	GGCGCC	1 cut(s)	56
SstI	GAGCTC	3 cut(s)	180, 228, 297
StyD4I	CCNGG	3 cut(s)	23, 198, 207
TaaI	ACNGT	2 cut(s)	87, 485
TaiI	ACGT	1 cut(s)	147
TasI	AATT	3 cut(s)	137, 493, 568
TauI	GCSGC	2 cut(s)	62, 465
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	230, 343
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	249, 357
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.