Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

1467987 .. 1468529

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCAAAATAAAAAGCTAGACACAGGTAAAGCTGCACACCAAGTGGTTGAGCTTATACTAAACCTAATCCATGGCTCAGTCGAGTTCTCTCTCTGCAGAAACCGAGTCATTGAGTCAGGTCTTGGGCCTTATCGAAACATTCAAAGCTTTCGATTCAGACAACGATGGGAAAATCACAGCAGCAGAGCTCGGTGGGATCCTAGGATCGCTTGGTTACAATCCGCTCGAGCAAGATGTGAGGGCAATGATGGAGCAAGGGGACACAAACAAAGATGGGTTGCTGAGCATAGAGGAGTTTCTGGAGATGAACACAAGGAACATGGAATTCGGGGGCTCGAAAATGTGCTCAAGAATGCTGTTGAGGCCTTGGATGTTGATGGGGATGAGGCTGTGACTGCAGAGGAGTTGTATGAGGTTATGGGAGATGGGATGGGATTTGAGTTGAGTCTGGAGGATTGCCAGGGTATTATTGCTTCTATAGATACAGATGGGGATGGGGCAGTCAGTTTTGAGGACTTCAAACTTATAGTTAACTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

5.37

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	113 - 174	1e-10	EF-hand domain pair
EF-hand_8	PF13833	130 - 174	8.1e-07	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	224
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	3 cut(s)	191, 204, 212
AcsI	RAATTY	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	143, 520
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	5 cut(s)	16, 32, 52, 147, 188
AluI	AGCT	5 cut(s)	16, 32, 52, 147, 188
Alw21I	GWGCWC	2 cut(s)	190, 348
AlwI	GGATC	3 cut(s)	191, 204, 212
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	125, 363
ApeKI	GCWGC	2 cut(s)	32, 180
ApoI	RAATTY	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	225
AvrII	CCTAGG	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	190, 336
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
Bbv12I	GWGCWC	2 cut(s)	190, 348
BbvI	GCAGC	2 cut(s)	19, 192
BccI	CCATC	8 cut(s)	159, 242, 267, 371, 419, 424, 482, 488
BciT130I	CCWGG	1 cut(s)	461
BfaI	CTAG	2 cut(s)	17, 201
BfmI	CTRYAG	3 cut(s)	94, 396, 477
BisI	GCNGC	2 cut(s)	33, 181
BlnI	CCTAGG	1 cut(s)	200
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	2 cut(s)	34, 182
Bme1390I	CCNGG	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	461
BpmI	CTGGAG	2 cut(s)	321, 470
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	70, 200, 366, 460
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	4 cut(s)	70, 200, 366, 460
BseGI	GGATG	4 cut(s)	376, 388, 435, 499
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	90, 273
BseRI	GAGGAG	2 cut(s)	306, 416
BseXI	GCAGC	2 cut(s)	19, 192
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	127, 365
BsiHKAI	GWGCWC	2 cut(s)	190, 348
BsiHKCI	CYCGRG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	127, 365
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	190, 336, 348
Bsp143I	GATC	2 cut(s)	196, 204
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	127, 365
BspCNI	CTCAG	2 cut(s)	89, 274
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	2 cut(s)	98, 400
BspPI	GGATC	3 cut(s)	191, 204, 212
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	4 cut(s)	70, 200, 366, 460
BssMI	GATC	2 cut(s)	196, 204
BssT1I	CCWWGG	3 cut(s)	70, 200, 366
Bst2UI	CCWGG	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	76, 282
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	4 cut(s)	376, 388, 435, 499
BstKTI	GATC	2 cut(s)	199, 207
BstMBI	GATC	2 cut(s)	196, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 395
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	3 cut(s)	94, 396, 477
BstV1I	GCAGC	2 cut(s)	19, 192
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	127, 365
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	376, 388, 435, 499
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	2 cut(s)	71, 320
DdeI	CTNAG	2 cut(s)	76, 282
DpnI	GATC	2 cut(s)	198, 206
DpnII	GATC	2 cut(s)	196, 204
DraIII	CACNNNGTG	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	3 cut(s)	70, 200, 366
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	190, 336
Eco53kI	GAGCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	3 cut(s)	70, 200, 366
EcoT38I	GRGCYC	2 cut(s)	190, 336
ErhI	CCWWGG	3 cut(s)	70, 200, 366
FaeI	CATG	2 cut(s)	74, 323
FaiI	YATR	8 cut(s)	56, 72, 288, 321, 411, 419, 479, 527
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	70, 319
Fnu4HI	GCNGC	2 cut(s)	33, 181
FokI	GGATG	4 cut(s)	383, 395, 442, 506
FriOI	GRGCYC	2 cut(s)	190, 336
Fsp4HI	GCNGC	2 cut(s)	33, 181
FspBI	CTAG	2 cut(s)	17, 201
GluI	GCNGC	2 cut(s)	33, 181
GsuI	CTGGAG	2 cut(s)	321, 470
HaeIII	GGCC	2 cut(s)	127, 365
Hin1II	CATG	2 cut(s)	74, 323
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	4 cut(s)	105, 113, 153, 445
HpaI	GTTAAC	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	300, 349, 449
Hpy8I	GTNNAC	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	4, 35, 96, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 395
HpyF3I	CTNAG	2 cut(s)	76, 282
Hsp92II	CATG	2 cut(s)	74, 323
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	196, 204
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	6 cut(s)	9, 102, 285, 434, 446, 473
Lsp1109I	GCAGC	2 cut(s)	19, 192
MaeI	CTAG	2 cut(s)	17, 201
MaeIII	GTNAC	2 cut(s)	213, 391
MalI	GATC	2 cut(s)	198, 206
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	2 cut(s)	196, 204
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	3 cut(s)	190, 336, 348
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	3 cut(s)	114, 122, 454
MnlI	CCTC	8 cut(s)	232, 284, 355, 379, 394, 406, 445, 505
MseI	TTAA	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	362, 395
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	196, 204
NlaIII	CATG	2 cut(s)	74, 323
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	365
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	34, 182
PleI	GAGTC	3 cut(s)	113, 121, 453
PpsI	GAGTC	3 cut(s)	113, 121, 453
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	125
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	2 cut(s)	98, 400
PsuI	RGATCY	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	2 cut(s)	33, 181
Sau3AI	GATC	2 cut(s)	196, 204
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	3 cut(s)	114, 122, 454
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	3 cut(s)	190, 336, 348
SetI	ASST	9 cut(s)	18, 28, 34, 54, 66, 121, 149, 190, 417
SfcI	CTRYAG	3 cut(s)	94, 396, 477
Sfr274I	CTCGAG	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	225, 347
SmoI	CTYRAG	2 cut(s)	225, 347
Sse9I	AATT	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	2 cut(s)	17, 201
SstI	GAGCTC	1 cut(s)	190
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	3 cut(s)	70, 200, 366
TaqI	TCGA	5 cut(s)	81, 133, 151, 226, 336
TasI	AATT	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	32, 180
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	321
XapI	RAATTY	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	2 cut(s)	17, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.