Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

204191 .. 205925

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgattggtggtgtggacgatgtgttgttggctaacggcgaccacgaagaagacataggcattatggtcgacggtagtgatcaattgctctaccggcgtggccaagaacctcgaccgcgccctcaccctgatccaatcacagaaatcccaatttcaaatccacccaaattctccagcctatgggtttcaaatccctgttctcctggaagaagaaatccactccctccagcgccggtggtgatgcggtcaccttcgttcaacacgcgggcgaagatcgtcgagttggagcaggtcttcaagaaattcgacgtcaacggcgacgacaagatctcgtcgtcggagctcggcgcgatcatgggcagcctgggccacccagcgacggaggatgagctccggtccatgatcctcgaggttgacgccgacggcgacgacttcatcgacttcaaggagttcgcggagctcaacaccaacaggatcgactccgccaaggcgttgcagaatctcaaggacgccttctccgtctacgacatcaactacaacggctcgatctccgtggaggagctcttcgaggtgctgaggagcttgggcgacgagtgctcgatcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

202

Amino Acids

22.32

Weight (kDa)

4.42

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AbsI	CCTCGAGG	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	69, 522
AccII	CGCG	4 cut(s)	118, 265, 350, 455
AciI	CCGC	5 cut(s)	116, 244, 265, 455, 483
AclWI	GGATC	3 cut(s)	125, 397, 482
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	167, 302
AcyI	GRCGYC	3 cut(s)	309, 417, 510
AfiI	CCNNNNNNNGG	2 cut(s)	180, 379
AgsI	TTSAA	5 cut(s)	156, 189, 259, 298, 445
AjnI	CCWGG	2 cut(s)	202, 363
AluBI	AGCT	5 cut(s)	343, 391, 460, 562, 582
AluI	AGCT	5 cut(s)	343, 391, 460, 562, 582
Alw21I	GWGCWC	5 cut(s)	345, 393, 462, 564, 599
AlwI	GGATC	3 cut(s)	125, 397, 482
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	100, 367
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	2 cut(s)	167, 302
AspLEI	GCGC	3 cut(s)	120, 232, 350
AspS9I	GGNCC	2 cut(s)	367, 396
AsuHPI	GGTGA	3 cut(s)	116, 240, 250
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	4 cut(s)	345, 393, 462, 564
BbsI	GAAGAC	2 cut(s)	57, 286
Bbv12I	GWGCWC	5 cut(s)	345, 393, 462, 564, 599
BbvCI	CCTCAGC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	372
BceAI	ACGGC	4 cut(s)	52, 331, 439, 556
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	2 cut(s)	204, 365
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	280
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	204, 365
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	367, 396
BmrFI	CCNGG	2 cut(s)	204, 365
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	57, 286
BpmI	CTGGAG	2 cut(s)	157, 210
Bpu10I	CCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	488
BsaHI	GRCGYC	3 cut(s)	309, 417, 510
BsaJI	CCNNGG	3 cut(s)	364, 486, 552
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 379
Bse118I	RCCGGY	2 cut(s)	93, 232
BseBI	CCWGG	2 cut(s)	204, 365
BseDI	CCNNGG	3 cut(s)	364, 486, 552
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	180, 379
BseMII	CTCAG	1 cut(s)	566
BseRI	GAGGAG	2 cut(s)	572, 592
BseXI	GCAGC	1 cut(s)	372
BseYI	CCCAGC	1 cut(s)	373
Bsh1236I	CGCG	4 cut(s)	118, 265, 350, 455
Bsh1285I	CGRYCG	2 cut(s)	116, 603
BshFI	GGCC	2 cut(s)	102, 369
BsiEI	CGRYCG	2 cut(s)	116, 603
BsiHKAI	GWGCWC	5 cut(s)	345, 393, 462, 564, 599
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	94, 233, 394
BslI	CCNNNNNNNGG	2 cut(s)	180, 379
BsnI	GGCC	2 cut(s)	102, 369
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	5 cut(s)	345, 393, 462, 564, 599
Bsp143I	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
BspACI	CCGC	5 cut(s)	116, 244, 265, 455, 483
BspANI	GGCC	2 cut(s)	102, 369
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	4 cut(s)	118, 265, 350, 455
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	125, 397, 482
BspQI	GCTCTTC	1 cut(s)	569
BsrFI	RCCGGY	2 cut(s)	93, 232
BssAI	RCCGGY	2 cut(s)	93, 232
BssECI	CCNNGG	3 cut(s)	364, 486, 552
BssMI	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
BssNI	GRCGYC	3 cut(s)	309, 417, 510
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	204, 365
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	569
BstACI	GRCGYC	3 cut(s)	309, 417, 510
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	552
BstEII	GGTNACC	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	4 cut(s)	118, 265, 350, 455
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	120, 232, 350
BstKTI	GATC	9 cut(s)	82, 133, 276, 330, 354, 405, 477, 549, 603
BstMBI	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
BstMCI	CGRYCG	2 cut(s)	116, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 366, 594
BstNI	CCWGG	2 cut(s)	204, 365
BstPI	GGTNACC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	202, 363
BstUI	CGCG	4 cut(s)	118, 265, 350, 455
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	2 cut(s)	57, 286
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	102, 369
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	3 cut(s)	120, 232, 350
Cfr10I	RCCGGY	2 cut(s)	93, 232
Cfr13I	GGNCC	2 cut(s)	367, 396
CseI	GACGC	2 cut(s)	425, 518
CviAII	CATG	2 cut(s)	355, 400
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	9 cut(s)	81, 132, 275, 329, 353, 404, 476, 548, 602
DpnII	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	4 cut(s)	343, 391, 460, 562
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	4 cut(s)	345, 393, 462, 564
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	4 cut(s)	343, 391, 460, 562
Eco88I	CYCGRG	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	246
EcoICRI	GAGCTC	4 cut(s)	343, 391, 460, 562
EcoO65I	GGTNACC	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	202, 363
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	4 cut(s)	345, 393, 462, 564
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	358, 403
FaiI	YATR	5 cut(s)	56, 65, 181, 356, 401
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FatI	CATG	2 cut(s)	354, 399
FauI	CCCGC	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	2 cut(s)	69, 522
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	4 cut(s)	345, 393, 462, 564
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	1 cut(s)	607
GlaI	GCGC	3 cut(s)	119, 231, 349
GluI	GCNGC	1 cut(s)	361
GsaI	CCCAGC	1 cut(s)	377
GsuI	CTGGAG	2 cut(s)	157, 210
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	102, 369
HapII	CCGG	3 cut(s)	94, 233, 394
HgaI	GACGC	2 cut(s)	425, 518
HhaI	GCGC	3 cut(s)	120, 232, 350
Hin1I	GRCGYC	3 cut(s)	309, 417, 510
Hin1II	CATG	2 cut(s)	358, 403
Hin6I	GCGC	3 cut(s)	118, 230, 348
HinP1I	GCGC	3 cut(s)	118, 230, 348
HincII	GTYRAC	3 cut(s)	70, 313, 415
HindII	GTYRAC	3 cut(s)	70, 313, 415
HinfI	GANTC	2 cut(s)	479, 499
HpaII	CCGG	3 cut(s)	94, 233, 394
HphI	GGTGA	3 cut(s)	116, 240, 250
Hpy166II	GTNNAC	5 cut(s)	16, 70, 313, 415, 523
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	5 cut(s)	16, 70, 313, 415, 523
HpyAV	CCTTC	2 cut(s)	261, 523
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 366, 594
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	3 cut(s)	309, 417, 510
Hsp92II	CATG	2 cut(s)	358, 403
HspAI	GCGC	3 cut(s)	118, 230, 348
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	6 cut(s)	286, 340, 396, 457, 559, 579
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	607
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	9 cut(s)	81, 132, 275, 329, 353, 404, 476, 548, 602
MboI	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
MboII	GAAGA	7 cut(s)	59, 62, 219, 222, 283, 286, 556
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	5 cut(s)	345, 393, 462, 564, 599
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	83, 150, 167, 302
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	264, 318
MnlI	CCTC	9 cut(s)	120, 132, 234, 376, 403, 416, 550, 562, 570
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	3 cut(s)	94, 233, 394
MspR9I	CCNGG	2 cut(s)	204, 365
MunI	CAATTG	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	204, 365
MvnI	CGCG	4 cut(s)	118, 265, 350, 455
MwoI	GCNNNNNNNGC	3 cut(s)	94, 366, 594
NdeII	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
NlaIII	CATG	2 cut(s)	358, 403
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 315, 423, 435, 516
PfeI	GAWTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	362
Ple19I	CGATCG	1 cut(s)	603
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp124BI	GAGCTC	4 cut(s)	345, 393, 462, 564
Psp6I	CCWGG	2 cut(s)	202, 363
PspEI	GGTNACC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	202, 363
PspPI	GGNCC	2 cut(s)	367, 396
PspXI	VCTCGAGB	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	327
PvuI	CGATCG	1 cut(s)	603
SacI	GAGCTC	4 cut(s)	345, 393, 462, 564
SalI	GTCGAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	569
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	9 cut(s)	79, 130, 273, 327, 351, 402, 474, 546, 600
Sau96I	GGNCC	2 cut(s)	367, 396
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	204, 365
SduI	GDGCHC	5 cut(s)	345, 393, 462, 564, 599
SfaNI	GCATC	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	407
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	396
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	407, 503
SmoI	CTYRAG	2 cut(s)	407, 503
Sse9I	AATT	4 cut(s)	83, 150, 167, 302
SsiI	CCGC	5 cut(s)	116, 244, 265, 455, 483
SspMI	CTAG	1 cut(s)	607
SstI	GAGCTC	4 cut(s)	345, 393, 462, 564
StyD4I	CCNGG	2 cut(s)	202, 363
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	312
TasI	AATT	4 cut(s)	83, 150, 167, 302
TfiI	GAWTC	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	424
TspGWI	ACGGA	3 cut(s)	395, 508, 541
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	167, 302
XhoI	CTCGAG	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	69, 522
XspI	CTAG	1 cut(s)	607
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.