FvH4_3g17660

Calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003291
Physical Location & Seq
Forward (+)
11246988 .. 11247209
222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17660.t1

Sequence Viewer

Length: 222 bp
ATGGGAAGCCTCGGCCACCTGGCTCCGTCAATGATCCTGGAGGTGTACGTCGACGACGACAGGTTCATCGACATCAACGAGGTCGTGGAGCTCAACACCAAAGGGATCAACTCGGCGGAGGCGATGCATAATCTGAAGGACGCCTTCTCCATCCACGACATCAACAGCAACAGCTCGATCTCGGCGGCGGAGCTTTCTGTAGCGCCTTCGCATTCACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

4.48

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 3 cut(s) 116, 185, 188
AclWI GGATC 2 cut(s) 28, 113
AcoI YGGCCR 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 47
AjnI CCWGG 2 cut(s) 18, 36
AluBI AGCT 3 cut(s) 91, 174, 193
AluI AGCT 3 cut(s) 91, 174, 193
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 2 cut(s) 28, 113
AoxI GGCC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 20, 38
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 20, 38
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 20, 38
BmsI GCATC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
BseBI CCWGG 2 cut(s) 20, 38
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 150
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 33, 105, 177
BspACI CCGC 3 cut(s) 116, 185, 188
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 28, 113
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 33, 105, 177
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 20, 38
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 36, 108, 180
BstMBI GATC 3 cut(s) 33, 105, 177
BstNI CCWGG 2 cut(s) 20, 38
BstSCI CCNGG 2 cut(s) 18, 36
BstSFI CTRYAG 1 cut(s) 198
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 150
CfoI GCGC 1 cut(s) 205
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 6 cut(s) 9, 15, 23, 91, 174, 193
CviKI_1 RGCY 6 cut(s) 9, 15, 23, 91, 174, 193
CviQI GTAC 1 cut(s) 46
DpnI GATC 3 cut(s) 35, 107, 179
DpnII GATC 3 cut(s) 33, 105, 177
EaeI YGGCCR 1 cut(s) 13
EciI GGCGGA 2 cut(s) 131, 203
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 18, 36
EcoT22I ATGCAT 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 1 cut(s) 129
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 46, 52
Hpy188I TCNGA 1 cut(s) 135
Hpy8I GTNNAC 2 cut(s) 46, 52
Hpy99I CGWCG 3 cut(s) 53, 56, 59
HpyAV CCTTC 3 cut(s) 130, 154, 216
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 141
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 33, 105, 177
LmnI GCTCC 3 cut(s) 28, 88, 190
LpnPI CCDG 5 cut(s) 5, 23, 32, 46, 50
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 48
MalI GATC 3 cut(s) 35, 107, 179
MboI GATC 3 cut(s) 33, 105, 177
MhlI GDGCHC 1 cut(s) 93
MnlI CCTC 4 cut(s) 20, 34, 73, 112
Mph1103I ATGCAT 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 20, 38
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 20, 38
NdeII GATC 3 cut(s) 33, 105, 177
NlaIV GGNNCC 1 cut(s) 24
NmeAIII GCCGAG 2 cut(s) 92, 161
NsiI ATGCAT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 75, 119, 215
PctI GAATGC 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 18, 36
PspGI CCWGG 2 cut(s) 18, 36
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 1 cut(s) 50
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 3 cut(s) 33, 105, 177
ScrFI CCNGG 2 cut(s) 20, 38
SduI GDGCHC 1 cut(s) 93
SetI ASST 8 cut(s) 21, 45, 51, 65, 84, 93, 176, 195
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 198
SgrDI CGTCGACG 1 cut(s) 50
SsiI CCGC 3 cut(s) 116, 185, 188
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 18, 36
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 51
TaqI TCGA 3 cut(s) 51, 69, 176
TauI GCSGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.