Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042435.1

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 892

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

aagaaatccactccctccagcgcaggcaccgctcagccggcggtgatgcggtcaccgtcgttcaacatgccgaagcagatcgctgagctggagcaagtctttaagaaattcgacatcaacggcgatggcaagatctcgtcgtcggagctcggagcgattatgggcagcctgggccacccggcgatggaggacgagctcgagtccatgatcctcgaggtcgacagcgatgacttcatcgatttcaaggagttcatggagctcaacaccaatgggatcaactctgccgaggcgttgcaaaatctcaaggacaccttctccgtttacgacatcgatcgcaacggctcgatctccgcggaggaggagctcttcaaggtgctgaggagcttgggcgacaagtgctcgatcggcgagtgcaggaaaatgattagtggcgtcgatccaactgggagagagagagagagagagagagagagagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

159

Amino Acids

17.65

Weight (kDa)

4.67

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	353
AciI	CCGC	5 cut(s)	30, 41, 49, 351, 353
AclWI	GGATC	3 cut(s)	202, 281, 431
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	64, 244, 370
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	6 cut(s)	88, 148, 196, 259, 364, 384
AluI	AGCT	6 cut(s)	88, 148, 196, 259, 364, 384
Alw21I	GWGCWC	5 cut(s)	150, 198, 261, 366, 401
AlwI	GGATC	3 cut(s)	202, 281, 431
Ama87I	CYCGRG	2 cut(s)	197, 212
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	45, 55
AvaI	CYCGRG	2 cut(s)	197, 212
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	4 cut(s)	150, 198, 261, 366
Bbv12I	GWGCWC	5 cut(s)	150, 198, 261, 366, 401
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	119, 178
BceAI	ACGGC	2 cut(s)	136, 355
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	1 cut(s)	166
BlpI	GCTNAGC	2 cut(s)	33, 84
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	170, 179
BmeT110I	CYCGRG	2 cut(s)	197, 212
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	170, 179
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	377
Bpu1102I	GCTNAGC	2 cut(s)	33, 84
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	2 cut(s)	237, 330
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	169, 285, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	2 cut(s)	237, 330
BseDI	CCNNGG	3 cut(s)	169, 285, 351
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	3 cut(s)	47, 75, 368
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	3 cut(s)	371, 374, 394
BseXI	GCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	2 cut(s)	334, 405
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	2 cut(s)	237, 330
BsiEI	CGRYCG	2 cut(s)	334, 405
BsiHKAI	GWGCWC	5 cut(s)	150, 198, 261, 366, 401
BsiHKCI	CYCGRG	2 cut(s)	197, 212
BsiSI	CCGG	2 cut(s)	38, 179
BslI	CCNNNNNNNGG	1 cut(s)	184
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	2 cut(s)	197, 212
Bsp1286I	GDGCHC	5 cut(s)	150, 198, 261, 366, 401
Bsp143I	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
Bsp1720I	GCTNAGC	2 cut(s)	33, 84
BspACI	CCGC	5 cut(s)	30, 41, 49, 351, 353
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	3 cut(s)	46, 76, 369
BspDI	ATCGAT	2 cut(s)	237, 330
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	3 cut(s)	202, 281, 431
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	169, 285, 351
BssMI	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
BssNI	GRCGYC	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	25, 39
BstDEI	CTNAG	3 cut(s)	33, 84, 377
BstDSI	CCRYGG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	8 cut(s)	81, 135, 210, 276, 334, 348, 405, 439
BstMBI	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
BstMCI	CGRYCG	2 cut(s)	334, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 38, 171, 396, 405
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	70
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	168, 177
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	2 cut(s)	237, 330
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	2 cut(s)	237, 330
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	3 cut(s)	138, 197, 240
Cac8I	GCNNGC	2 cut(s)	25, 39
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	172
Cfr42I	CCGCGG	1 cut(s)	354
ClaI	ATCGAT	2 cut(s)	237, 330
CseI	GACGC	1 cut(s)	421
CviAII	CATG	3 cut(s)	67, 205, 253
DdeI	CTNAG	3 cut(s)	33, 84, 377
DpnI	GATC	8 cut(s)	80, 134, 209, 275, 333, 347, 404, 438
DpnII	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	4 cut(s)	148, 196, 259, 364
Eco24I	GRGCYC	4 cut(s)	150, 198, 261, 366
Eco53kI	GAGCTC	4 cut(s)	148, 196, 259, 364
Eco88I	CYCGRG	2 cut(s)	197, 212
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	4 cut(s)	148, 196, 259, 364
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	4 cut(s)	150, 198, 261, 366
FaeI	CATG	3 cut(s)	70, 208, 256
FaiI	YATR	4 cut(s)	68, 161, 206, 254
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	3 cut(s)	66, 204, 252
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	4 cut(s)	150, 198, 261, 366
Fsp4HI	GCNGC	1 cut(s)	166
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	38, 179
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	70, 208, 256
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	38, 179
HphI	GGTGA	2 cut(s)	45, 55
Hpy166II	GTNNAC	2 cut(s)	220, 322
Hpy188I	TCNGA	2 cut(s)	145, 152
Hpy8I	GTNNAC	2 cut(s)	220, 322
Hpy99I	CGWCG	4 cut(s)	61, 142, 145, 437
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	295, 414
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 38, 171, 396, 405
HpyF3I	CTNAG	3 cut(s)	33, 84, 377
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	70, 208, 256
HspAI	GCGC	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	354
Kzo9I	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	6 cut(s)	91, 145, 152, 256, 361, 381
LpnPI	CCDG	9 cut(s)	9, 31, 51, 74, 155, 182, 192, 400, 429
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	8 cut(s)	80, 134, 209, 275, 333, 347, 404, 438
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	5 cut(s)	150, 198, 261, 366, 401
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	123, 464
MnlI	CCTC	8 cut(s)	25, 181, 208, 221, 280, 349, 352, 372
MroNI	GCCGGC	1 cut(s)	37
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	38, 179
MspR9I	CCNGG	2 cut(s)	170, 179
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	29, 38, 171, 396, 405
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	70, 208, 256
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	70
PaeR7I	CTCGAG	2 cut(s)	197, 212
PciSI	GCTCTTC	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	167
Ple19I	CGATCG	2 cut(s)	334, 405
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	4 cut(s)	150, 198, 261, 366
Psp6I	CCWGG	1 cut(s)	168
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	172
PspXI	VCTCGAGB	2 cut(s)	197, 212
PsuI	RGATCY	1 cut(s)	132
PvuI	CGATCG	2 cut(s)	334, 405
SacI	GAGCTC	4 cut(s)	150, 198, 261, 366
SacII	CCGCGG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	8 cut(s)	78, 132, 207, 273, 331, 345, 402, 436
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	170, 179
SduI	GDGCHC	5 cut(s)	150, 198, 261, 366, 401
SetI	ASST	9 cut(s)	90, 150, 198, 219, 261, 314, 366, 375, 386
SfaNI	GCATC	1 cut(s)	36
Sfr274I	CTCGAG	2 cut(s)	197, 212
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SlaI	CTCGAG	2 cut(s)	197, 212
SmlI	CTYRAG	3 cut(s)	197, 212, 302
SmoI	CTYRAG	3 cut(s)	197, 212, 302
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	5 cut(s)	30, 41, 49, 351, 353
SstI	GAGCTC	4 cut(s)	150, 198, 261, 366
StyD4I	CCNGG	2 cut(s)	168, 177
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	9 cut(s)	111, 198, 213, 219, 237, 330, 344, 401, 435
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	223, 241
TspGWI	ACGGA	1 cut(s)	307
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	70
XhoI	CTCGAG	2 cut(s)	197, 212
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.