Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8155060.1

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

94 .. 513

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8155060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgggtttcaaatctgtcttcttcctgaagaagaaatccactccctccagcgccaatgccactcagcaggcggtgatgcggtcaccgtcgttcaacacgcgggcgcatatggtcaagttggagcaggtcttcaagaaattcgacttcaacagggacggcaagatctcgtcgtcggagctcagcgcaatcatgggcagcttgggccacccagcaacggaggacgagctcccgtccatgatcctcgaggtcgacgctgacgttgacggcgaagacttcatcgacttcaaggagttcgtggagctcaacaccaacgggattgacttcgccgaggctttgcagaatctcaaggacaccttctccatctacgacacatcgacgacaacggctcgatatccgcggaggagctcttcaaggtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

5.39

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	2 cut(s)	100, 397
AciI	CCGC	5 cut(s)	71, 79, 100, 395, 397
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	10, 94, 133, 148, 286, 411
AluBI	AGCT	5 cut(s)	178, 198, 226, 301, 405
AluI	AGCT	5 cut(s)	178, 198, 226, 301, 405
Alw21I	GWGCWC	4 cut(s)	180, 228, 303, 407
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	3 cut(s)	53, 106, 185
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	75, 85
AvaI	CYCGRG	1 cut(s)	242
BanII	GRGCYC	4 cut(s)	180, 228, 303, 407
BbsI	GAAGAC	3 cut(s)	10, 121, 276
Bbv12I	GWGCWC	4 cut(s)	180, 228, 303, 407
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	3 cut(s)	172, 280, 399
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	202
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	3 cut(s)	10, 121, 276
BpmI	CTGGAG	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	327, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	327, 395
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	77, 193
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	100, 397
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	4 cut(s)	180, 228, 303, 407
BsiHKCI	CYCGRG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	4 cut(s)	180, 228, 303, 407
Bsp143I	GATC	2 cut(s)	162, 237
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	5 cut(s)	71, 79, 100, 395, 397
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	76, 192
BspFNI	CGCG	2 cut(s)	100, 397
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	327, 395
BssMI	GATC	2 cut(s)	162, 237
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	69, 102
BstDEI	CTNAG	2 cut(s)	63, 179
BstDSI	CCRYGG	1 cut(s)	395
BstEII	GGTNACC	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	100, 397
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 106, 185
BstKTI	GATC	2 cut(s)	165, 240
BstMBI	GATC	2 cut(s)	162, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	81
BstUI	CGCG	2 cut(s)	100, 397
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	3 cut(s)	10, 121, 276
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	69, 102
CfoI	GCGC	3 cut(s)	53, 106, 185
Cfr13I	GGNCC	1 cut(s)	202
Cfr42I	CCGCGG	1 cut(s)	398
CseI	GACGC	1 cut(s)	260
CviAII	CATG	2 cut(s)	190, 235
CviJI	RGCY	8 cut(s)	178, 198, 204, 226, 301, 332, 386, 405
CviKI_1	RGCY	8 cut(s)	178, 198, 204, 226, 301, 332, 386, 405
DdeI	CTNAG	2 cut(s)	63, 179
DpnI	GATC	2 cut(s)	164, 239
DpnII	GATC	2 cut(s)	162, 237
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Ecl136II	GAGCTC	4 cut(s)	178, 226, 301, 405
Eco24I	GRGCYC	4 cut(s)	180, 228, 303, 407
Eco32I	GATATC	1 cut(s)	392
Eco53kI	GAGCTC	4 cut(s)	178, 226, 301, 405
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	4 cut(s)	178, 226, 301, 405
EcoO65I	GGTNACC	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	392
EcoT38I	GRGCYC	4 cut(s)	180, 228, 303, 407
FaeI	CATG	2 cut(s)	193, 238
FaiI	YATR	4 cut(s)	108, 110, 191, 236
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	189, 234
FauI	CCCGC	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	196
FriOI	GRGCYC	4 cut(s)	180, 228, 303, 407
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	3 cut(s)	52, 105, 184
GluI	GCNGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	53, 106, 185
Hin1II	CATG	2 cut(s)	193, 238
Hin6I	GCGC	3 cut(s)	51, 104, 183
HinP1I	GCGC	3 cut(s)	51, 104, 183
HincII	GTYRAC	2 cut(s)	250, 262
HindII	GTYRAC	2 cut(s)	250, 262
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	2 cut(s)	75, 85
Hpy166II	GTNNAC	2 cut(s)	250, 262
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	25, 133
Hpy8I	GTNNAC	2 cut(s)	250, 262
Hpy99I	CGWCG	5 cut(s)	91, 172, 175, 254, 379
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	2 cut(s)	63, 179
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	193, 238
HspAI	GCGC	3 cut(s)	51, 104, 183
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	162, 237
LguI	GCTCTTC	1 cut(s)	412
LmnI	GCTCC	5 cut(s)	121, 175, 231, 298, 402
LpnPI	CCDG	6 cut(s)	38, 53, 61, 110, 136, 222
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	164, 239
MboI	GATC	2 cut(s)	162, 237
MboII	GAAGA	7 cut(s)	10, 13, 40, 43, 121, 281, 399
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	4 cut(s)	180, 228, 303, 407
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	99, 153
MnlI	CCTC	6 cut(s)	55, 211, 238, 251, 322, 393
MspA1I	CMGCKG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	100, 397
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	2 cut(s)	162, 237
NlaIII	CATG	2 cut(s)	193, 238
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 264
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	197
Psp124BI	GAGCTC	4 cut(s)	180, 228, 303, 407
PspEI	GGTNACC	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	162
SacI	GAGCTC	4 cut(s)	180, 228, 303, 407
SacII	CCGCGG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	412
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	162, 237
Sau96I	GGNCC	1 cut(s)	202
SduI	GDGCHC	4 cut(s)	180, 228, 303, 407
SfaNI	GCATC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	242, 344
SmoI	CTYRAG	2 cut(s)	242, 344
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	5 cut(s)	71, 79, 100, 395, 397
SstI	GAGCTC	4 cut(s)	180, 228, 303, 407
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	6 cut(s)	141, 243, 249, 279, 374, 388
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	230
XapI	RAATTY	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.