Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

8723627 .. 8724711

Gene Structure 1085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTCAACAAAAACCAAGGATCCAACGGTGGTTCATCTTCCAATGTCGGCATCGGAGCTGATTCACCTTACCTTCAAAAGGCACGTTCAGGCAAAACAGAGATCAGAGAACTCGAAGCAGTTTTCAAGAAATTCGACGTGAACGGAGATGGTAAGATCTCGTCAAAGGAACTTGGTGCAATAATGACGAGTCTAGGTCATGAGGTACCAGAAGAAGAACTAGAGAAAGCGATCACTGAGATAGATCGTAAAGGAGATGGTTACATAAACTTTGAAGAGTTTGTGGAGCTGAACACGAAAGGTATGGATCAAAATGATGTTTTGGAGAATCTGAAAGATGCGTTTTCGGTTTACGATATCGATGGGAATGGTTCGATATCGGCTGAGGAGTTGCATGAGGTTTTGAGGAGTCTTGGTGATGAATGTTCGATCGCGGAGTGTAGGAAGATGATTGGTGGTGTTGATAAAGATGGTGATGGTACGATTGATTTTGAAGAGTTTAAGATTATGATGACTATGGGATCTAGACGTGATAATGTCATGGGAGGTGGTCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

186

Amino Acids

20.3

Weight (kDa)

4.56

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	37 - 65	3.1e-08	EF hand domain
EF-hand_7	PF13499	37 - 97	5.6e-15	EF-hand domain pair
EF-hand_6	PF13405	37 - 66	4.9e-08	EF-hand domain
EF-hand_5	PF13202	38 - 62	5.2e-08	EF hand
EF-hand_8	PF13833	60 - 97	4.6e-07	EF-hand domain pair
EF-hand_1	PF00036	73 - 97	1.1e-06	EF hand domain
EF-hand_7	PF13499	109 - 172	1.1e-15	EF-hand domain pair
EF-hand_1	PF00036	111 - 138	7.4e-07	EF hand domain
EF-hand_6	PF13405	111 - 139	4.8e-08	EF-hand domain
EF-hand_5	PF13202	111 - 134	7e-06	EF hand
EF-hand_1	PF00036	146 - 173	7.6e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AccII	CGCG	1 cut(s)	434
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	4 cut(s)	15, 28, 315, 529
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	207, 481
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	7, 77, 127, 275, 494
AjiI	CACGTC	2 cut(s)	139, 530
AluBI	AGCT	2 cut(s)	59, 289
AluI	AGCT	2 cut(s)	59, 289
AlwI	GGATC	4 cut(s)	15, 28, 315, 529
ApoI	RAATTY	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	57, 428, 485
AvaII	GGWCC	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	384
BccI	CCATC	5 cut(s)	143, 251, 356, 464, 470
BfaI	CTAG	3 cut(s)	194, 221, 525
BglII	AGATCT	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	2 cut(s)	139, 530
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	22, 207
BmsI	GCATC	2 cut(s)	60, 328
Bpu10I	CCTNAGC	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	16, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	16, 554
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	228, 375
BseRI	GAGGAG	2 cut(s)	401, 421
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	79
Bsp143I	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
BspACI	CCGC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	229, 376
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	434
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	22, 207
BspPI	GGATC	4 cut(s)	15, 28, 315, 529
BspT107I	GGYRCC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	16, 554
BssMI	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	270, 489
BstDEI	CTNAG	2 cut(s)	237, 384
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	434
BstKTI	GATC	8 cut(s)	23, 105, 159, 234, 247, 310, 432, 524
BstMBI	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
BstMCI	CGRYCG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	434
BstX2I	RGATCY	3 cut(s)	20, 156, 521
BstYI	RGATCY	3 cut(s)	20, 156, 521
Bsu15I	ATCGAT	1 cut(s)	360
BsuTUI	ATCGAT	1 cut(s)	360
BtrI	CACGTC	2 cut(s)	139, 530
BtsIMutI	CAGTG	1 cut(s)	234
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	206, 480
CviAII	CATG	3 cut(s)	200, 395, 541
CviJI	RGCY	3 cut(s)	59, 289, 383
CviKI_1	RGCY	3 cut(s)	59, 289, 383
CviQI	GTAC	2 cut(s)	206, 480
DdeI	CTNAG	2 cut(s)	237, 384
DpnI	GATC	8 cut(s)	22, 104, 158, 233, 246, 309, 431, 523
DpnII	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
Eam1104I	CTCTTC	2 cut(s)	270, 489
EarI	CTCTTC	2 cut(s)	270, 489
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	2 cut(s)	358, 378
Eco47I	GGWCC	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRV	GATATC	2 cut(s)	358, 378
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	203, 398, 544
FaiI	YATR	7 cut(s)	201, 266, 305, 396, 509, 518, 542
FatI	CATG	3 cut(s)	199, 394, 540
FspBI	CTAG	3 cut(s)	194, 221, 525
Hin1II	CATG	3 cut(s)	203, 398, 544
HinfI	GANTC	4 cut(s)	62, 190, 328, 409
HphI	GGTGA	3 cut(s)	57, 428, 485
Hpy166II	GTNNAC	2 cut(s)	142, 352
Hpy188I	TCNGA	4 cut(s)	56, 107, 333, 555
Hpy188III	TCNNGA	3 cut(s)	127, 200, 525
Hpy8I	GTNNAC	2 cut(s)	142, 352
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	3 cut(s)	85, 138, 529
HpyCH4V	TGCA	2 cut(s)	179, 394
HpyF3I	CTNAG	2 cut(s)	237, 384
HpySE526I	ACGT	3 cut(s)	85, 138, 529
Hsp92II	CATG	3 cut(s)	203, 398, 544
KpnI	GGTACC	1 cut(s)	209
Kzo9I	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
LmnI	GCTCC	2 cut(s)	56, 286
LpnPI	CCDG	2 cut(s)	75, 222
LweI	GCATC	2 cut(s)	60, 328
MaeI	CTAG	3 cut(s)	194, 221, 525
MaeII	ACGT	3 cut(s)	85, 138, 529
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	8 cut(s)	22, 104, 158, 233, 246, 309, 431, 523
MboI	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
MboII	GAAGA	6 cut(s)	30, 224, 227, 287, 457, 506
MflI	RGATCY	3 cut(s)	20, 156, 521
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	199, 418
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	6 cut(s)	196, 379, 391, 399, 539, 549
MseI	TTAA	1 cut(s)	501
MvnI	CGCG	1 cut(s)	434
NdeII	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
NlaIII	CATG	3 cut(s)	203, 398, 544
NlaIV	GGNNCC	2 cut(s)	22, 207
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	62, 328
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	2 cut(s)	198, 417
PpsI	GAGTC	2 cut(s)	198, 417
PspN4I	GGNNCC	2 cut(s)	22, 207
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	20, 156, 521
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	2 cut(s)	207, 481
RsaNI	GTAC	2 cut(s)	206, 480
SaqAI	TTAA	1 cut(s)	501
Sau3AI	GATC	8 cut(s)	20, 102, 156, 231, 244, 307, 429, 521
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	199, 418
SfaNI	GCATC	2 cut(s)	60, 328
SinI	GGWCC	1 cut(s)	551
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	3 cut(s)	194, 221, 525
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	3 cut(s)	88, 141, 532
TaqI	TCGA	5 cut(s)	114, 135, 360, 374, 428
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	62, 328
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	24, 435
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	524
XspI	CTAG	3 cut(s)	194, 221, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.