Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004091.1

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

606 .. 1906

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgctccaatccgccgtctggatcgctgcagcctccccctccctttatgagctccctgtccgacgcatcgccgccgacgtggccaagatcctcgaccgcgccctcaccctgatccaatcacagaaatcccaatttcaaatctacctaaattctccagactatgggtttcaaatccctcttctcctagaagaagaaatccactccctccaacgccggcaccgctcagccggcggtgatgcgaaattcgacatcaacggcgatggcaagatctcgtcgtcggagctcggagcgatcatgggcagcctaggccacccggcgatggaggacgagctcgagtccatgatcctcaaggtcgacggcgacggctttatcgatttcaaggagttcatggagctcaacaccaacgggatcgactctgccgaggtgttgcagaatctcaaggacaccttctccgtttacgacatcgatcgcaacggctcgatctccgcggaggaggagcttttcaagcttatgcgtcatagttctggatttgggtgggatccgatcacaaagagattcactgctgatgatgaagtatggggagattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

196

Amino Acids

21.91

Weight (kDa)

4.54

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	99, 488
AciI	CCGC	7 cut(s)	12, 72, 97, 220, 231, 486, 488
AclWI	GGATC	7 cut(s)	29, 82, 106, 337, 416, 533, 546
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	148, 242
AfiI	CCNNNNNNNGG	3 cut(s)	18, 161, 319
AgsI	TTSAA	4 cut(s)	137, 170, 379, 505
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	6 cut(s)	52, 283, 331, 394, 499, 508
AluI	AGCT	6 cut(s)	52, 283, 331, 394, 499, 508
Alw21I	GWGCWC	4 cut(s)	54, 285, 333, 396
AlwI	GGATC	7 cut(s)	29, 82, 106, 337, 416, 533, 546
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	81, 307
ApeKI	GCWGC	3 cut(s)	26, 29, 300
ApoI	RAATTY	2 cut(s)	148, 242
AspA2I	CCTAGG	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	97, 245
AvaI	CYCGRG	1 cut(s)	332
AvrII	CCTAGG	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	4 cut(s)	54, 285, 333, 396
Bbv12I	GWGCWC	4 cut(s)	54, 285, 333, 396
BbvI	GCAGC	3 cut(s)	13, 41, 312
BccI	CCATC	2 cut(s)	254, 313
BceAI	ACGGC	4 cut(s)	271, 373, 379, 490
BcnI	CCSGG	1 cut(s)	314
BfaI	CTAG	2 cut(s)	185, 305
BfmI	CTRYAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	4 cut(s)	27, 30, 72, 301
BlnI	CCTAGG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	4 cut(s)	28, 31, 73, 302
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	218, 540
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	75, 226
BpmI	CTGGAG	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	332, 422
BpuMI	CCSGG	1 cut(s)	314
Bsa29I	ATCGAT	2 cut(s)	372, 465
BsaJI	CCNNGG	3 cut(s)	304, 420, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 161, 319
Bse118I	RCCGGY	2 cut(s)	213, 227
BseCI	ATCGAT	2 cut(s)	372, 465
BseDI	CCNNGG	3 cut(s)	304, 420, 486
BseLI	CCNNNNNNNGG	3 cut(s)	18, 161, 319
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	506, 509
BseXI	GCAGC	3 cut(s)	13, 41, 312
Bsh1236I	CGCG	2 cut(s)	99, 488
Bsh1285I	CGRYCG	2 cut(s)	97, 469
BshFI	GGCC	2 cut(s)	83, 309
BshNI	GGYRCC	1 cut(s)	216
BshVI	ATCGAT	2 cut(s)	372, 465
BsiEI	CGRYCG	2 cut(s)	97, 469
BsiHKAI	GWGCWC	4 cut(s)	54, 285, 333, 396
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	214, 228, 314
BslI	CCNNNNNNNGG	3 cut(s)	18, 161, 319
BsnI	GGCC	2 cut(s)	83, 309
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	4 cut(s)	54, 285, 333, 396
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	7 cut(s)	12, 72, 97, 220, 231, 486, 488
BspANI	GGCC	2 cut(s)	83, 309
BspCNI	CTCAG	1 cut(s)	236
BspDI	ATCGAT	2 cut(s)	372, 465
BspFNI	CGCG	2 cut(s)	99, 488
BspLI	GGNNCC	2 cut(s)	218, 540
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	7 cut(s)	29, 82, 106, 337, 416, 533, 546
BspT107I	GGYRCC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	2 cut(s)	213, 227
BssAI	RCCGGY	2 cut(s)	213, 227
BssECI	CCNNGG	3 cut(s)	304, 420, 486
BssT1I	CCWWGG	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	215, 229
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	99, 488
BstHHI	GCGC	1 cut(s)	101
BstMCI	CGRYCG	2 cut(s)	97, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 219, 228, 306, 505
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	2 cut(s)	99, 488
BstV1I	GCAGC	3 cut(s)	13, 41, 312
BstX2I	RGATCY	3 cut(s)	87, 267, 538
BstYI	RGATCY	3 cut(s)	87, 267, 538
Bsu15I	ATCGAT	2 cut(s)	372, 465
BsuRI	GGCC	2 cut(s)	83, 309
BsuTUI	ATCGAT	2 cut(s)	372, 465
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	3 cut(s)	52, 273, 332
BtrI	CACGTC	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	215, 229
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	2 cut(s)	213, 227
Cfr42I	CCGCGG	1 cut(s)	489
ClaI	ATCGAT	2 cut(s)	372, 465
CseI	GACGC	2 cut(s)	72, 503
CviAII	CATG	3 cut(s)	295, 340, 388
DdeI	CTNAG	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	4 cut(s)	52, 283, 331, 394
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	4 cut(s)	54, 285, 333, 396
Eco53kI	GAGCTC	4 cut(s)	52, 283, 331, 394
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	4 cut(s)	52, 283, 331, 394
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	4 cut(s)	54, 285, 333, 396
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	298, 343, 391
FaiI	YATR	8 cut(s)	48, 162, 296, 341, 389, 512, 519, 577
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	294, 339, 387
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	27, 30, 72, 301
FriOI	GRGCYC	4 cut(s)	54, 285, 333, 396
Fsp4HI	GCNGC	4 cut(s)	27, 30, 72, 301
FspBI	CTAG	2 cut(s)	185, 305
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	4 cut(s)	27, 30, 72, 301
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	83, 309
HapII	CCGG	3 cut(s)	214, 228, 314
HgaI	GACGC	2 cut(s)	72, 503
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	298, 343, 391
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	4 cut(s)	335, 413, 433, 555
HpaII	CCGG	3 cut(s)	214, 228, 314
HphI	GGTGA	2 cut(s)	97, 245
Hpy166II	GTNNAC	2 cut(s)	355, 457
Hpy188I	TCNGA	4 cut(s)	62, 280, 287, 543
Hpy188III	TCNNGA	3 cut(s)	19, 155, 525
Hpy8I	GTNNAC	2 cut(s)	355, 457
Hpy99I	CGWCG	6 cut(s)	66, 80, 277, 280, 359, 365
HpyAV	CCTTC	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	29, 430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 219, 228, 306, 505
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	298, 343, 391
HspAI	GCGC	1 cut(s)	99
KroI	GCCGGC	2 cut(s)	213, 227
KroNI	GCCGGC	2 cut(s)	215, 229
KspI	CCGCGG	1 cut(s)	489
LmnI	GCTCC	6 cut(s)	9, 57, 280, 287, 391, 496
LpnPI	CCDG	8 cut(s)	4, 69, 122, 168, 227, 241, 327, 510
Lsp1109I	GCAGC	3 cut(s)	13, 41, 312
LweI	GCATC	2 cut(s)	75, 226
MaeI	CTAG	2 cut(s)	185, 305
MaeII	ACGT	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	170, 200, 203
MflI	RGATCY	3 cut(s)	87, 267, 538
MhlI	GDGCHC	4 cut(s)	54, 285, 333, 396
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	131, 148, 242
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	344, 407
MmeI	TCCRAC	3 cut(s)	85, 232, 258
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	2 cut(s)	213, 227
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	214, 228, 314
MspR9I	CCNGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	99, 488
MwoI	GCNNNNNNNGC	5 cut(s)	80, 219, 228, 306, 505
NaeI	GCCGGC	2 cut(s)	215, 229
NciI	CCSGG	1 cut(s)	314
NgoMIV	GCCGGC	2 cut(s)	213, 227
NlaIII	CATG	3 cut(s)	298, 343, 391
NlaIV	GGNNCC	2 cut(s)	218, 540
NmeAIII	GCCGAG	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 369, 417
PdiI	GCCGGC	2 cut(s)	215, 229
PfeI	GAWTC	2 cut(s)	433, 555
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	28, 31, 73, 302
Ple19I	CGATCG	1 cut(s)	469
PleI	GAGTC	2 cut(s)	343, 407
PpsI	GAGTC	2 cut(s)	343, 407
Psp124BI	GAGCTC	4 cut(s)	54, 285, 333, 396
PspN4I	GGNNCC	2 cut(s)	218, 540
PspXI	VCTCGAGB	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	3 cut(s)	87, 267, 538
PvuI	CGATCG	1 cut(s)	469
SacI	GAGCTC	4 cut(s)	54, 285, 333, 396
SacII	CCGCGG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	353
SatI	GCNGC	4 cut(s)	27, 30, 72, 301
SchI	GAGTC	2 cut(s)	344, 407
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	4 cut(s)	54, 285, 333, 396
SfaNI	GCATC	2 cut(s)	75, 226
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	332
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	3 cut(s)	332, 347, 437
SmoI	CTYRAG	3 cut(s)	332, 347, 437
Sse9I	AATT	3 cut(s)	131, 148, 242
SsiI	CCGC	7 cut(s)	12, 72, 97, 220, 231, 486, 488
SspMI	CTAG	2 cut(s)	185, 305
SstI	GAGCTC	4 cut(s)	54, 285, 333, 396
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	8 cut(s)	93, 246, 333, 354, 372, 411, 465, 479
TasI	AATT	3 cut(s)	131, 148, 242
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	433, 555
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	3 cut(s)	26, 29, 300
TspDTI	ATGAA	2 cut(s)	376, 585
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	148, 242
XhoI	CTCGAG	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	185, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.