Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

72028925 .. 72029455

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTTTCAAATCCCTCTTCTCTTGGAAGAAGAAATCCACTCCCTCCAGCGCCGGCATCGCTCAGCCGGCGGTGATTTGGTCACCGTCATTCAACATGCGGGCGTATATCGCAGAGTTGGAGCAGGTCTTCAAGAAATTCATCGTCAACGGCGATGGCAAGATCTCCTCGTCGGAGCTCGGAGCGATCATGGGCAGCCTGGGCCACCCAGCGACGGAGGACGAGCTCCGGTCCATGATCCTCGAGGTCGACGGCGACGGCTTCATCGACTTCAAGGAGTTCGTGGAGCTCAACACCAACGGGATCGACTCCGCCAAGGCGTTGCAGAATCTCAATGACACCTTCTCCTGCTCGATCTGCGAGTGCCGGAAAATGATCAGTGGCATTGATGTAACTGGGAGAGAGAGAGAGAATATAGAGAAAAAAAATTTAAAAAAAGAGAGAAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

150

Amino Acids

16.66

Weight (kDa)

6.6

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	39 - 97	1.1e-08	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	71, 100, 312
AclWI	GGATC	2 cut(s)	232, 311
AcsI	RAATTY	2 cut(s)	137, 427
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	10, 94, 133, 274
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	178, 226, 289
AluI	AGCT	3 cut(s)	178, 226, 289
Alw21I	GWGCWC	3 cut(s)	180, 228, 291
AlwI	GGATC	2 cut(s)	232, 311
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	137, 427
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	202, 231
AsuHPI	GGTGA	2 cut(s)	75, 85
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	231
BanII	GRGCYC	3 cut(s)	180, 228, 291
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	3 cut(s)	180, 228, 291
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	3 cut(s)	166, 268, 274
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	202, 231
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	199, 315
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	53, 67
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	199, 315
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	3 cut(s)	180, 228, 291
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	54, 68, 229, 367
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	180, 228, 291
Bsp143I	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	71, 100, 312
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	232, 311
BsrFI	RCCGGY	2 cut(s)	53, 67
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	2 cut(s)	53, 67
BssECI	CCNNGG	2 cut(s)	199, 315
BssMI	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	55, 69, 102
BstDEI	CTNAG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	165, 189, 240, 306, 357, 378
BstMBI	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 68, 110, 201, 357
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	204
BtgZI	GCGATG	2 cut(s)	43, 168
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	55, 69, 102
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	53, 67
Cfr13I	GGNCC	2 cut(s)	202, 231
CviAII	CATG	3 cut(s)	97, 190, 235
CviJI	RGCY	7 cut(s)	67, 178, 198, 204, 226, 261, 289
CviKI_1	RGCY	7 cut(s)	67, 178, 198, 204, 226, 261, 289
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	6 cut(s)	164, 188, 239, 305, 356, 377
DpnII	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	3 cut(s)	178, 226, 289
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	3 cut(s)	180, 228, 291
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	3 cut(s)	178, 226, 289
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	3 cut(s)	178, 226, 289
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	3 cut(s)	180, 228, 291
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	100, 193, 238
FaiI	YATR	5 cut(s)	98, 108, 191, 236, 416
FatI	CATG	3 cut(s)	96, 189, 234
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	196
FriOI	GRGCYC	3 cut(s)	180, 228, 291
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	4 cut(s)	54, 68, 229, 367
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	100, 193, 238
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	2 cut(s)	148, 250
HindII	GTYRAC	2 cut(s)	148, 250
HinfI	GANTC	2 cut(s)	308, 328
HpaII	CCGG	4 cut(s)	54, 68, 229, 367
HphI	GGTGA	2 cut(s)	75, 85
Hpy166II	GTNNAC	2 cut(s)	148, 250
Hpy188I	TCNGA	2 cut(s)	175, 182
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	148, 250
Hpy99I	CGWCG	4 cut(s)	175, 217, 254, 260
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 68, 110, 201, 357
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	100, 193, 238
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	2 cut(s)	53, 67
KroNI	GCCGGC	2 cut(s)	55, 69
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
LmnI	GCTCC	5 cut(s)	121, 175, 182, 231, 286
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	81, 391
MalI	GATC	6 cut(s)	164, 188, 239, 305, 356, 377
MboI	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
MboII	GAAGA	4 cut(s)	10, 40, 43, 121
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	3 cut(s)	180, 228, 291
MluCI	AATT	3 cut(s)	137, 427, 448
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	99, 153
MnlI	CCTC	6 cut(s)	26, 55, 178, 211, 238, 251
MroNI	GCCGGC	2 cut(s)	53, 67
MseI	TTAA	1 cut(s)	431
MspI	CCGG	4 cut(s)	54, 68, 229, 367
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	5 cut(s)	59, 68, 110, 201, 357
NaeI	GCCGGC	2 cut(s)	55, 69
NdeII	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
NgoMIV	GCCGGC	2 cut(s)	53, 67
NlaIII	CATG	3 cut(s)	100, 193, 238
NmuCI	GTSAC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 264
PdiI	GCCGGC	2 cut(s)	55, 69
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	3 cut(s)	180, 228, 291
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	202, 231
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	162
SacI	GAGCTC	3 cut(s)	180, 228, 291
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	6 cut(s)	162, 186, 237, 303, 354, 375
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	180, 228, 291
SetI	ASST	6 cut(s)	129, 180, 228, 249, 291, 344
SfaNI	GCATC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	137, 427, 448
SsiI	CCGC	3 cut(s)	71, 100, 312
SstI	GAGCTC	3 cut(s)	180, 228, 291
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	243, 249, 267, 306, 353
TasI	AATT	3 cut(s)	137, 427, 448
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	130, 253
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	2 cut(s)	137, 427
XceI	RCATGY	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.