FvH4_3g19960

Calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003291
Physical Location & Seq
Reverse (-)
13112928 .. 13113164
237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19960.t1

Sequence Viewer

Length: 237 bp
ATGGGAAGCCTCGTTCACCTAACGACGGAGGACGAGCTCCGGTCGATGATCCTGGAGGTGTACGCCGACGGCAACAGGTTCATCGACATCAACGAGGTCATGGAGCTCAACACCAACGGGATCAACTGGGCGGAGACGATGCAGAATCTGAAGGACGCCTTCTCCGTCTACGACATCGACGGCAACGGCTCGATCTCGGTGGCAGAGCTTTCCGCAGTGCCTTCGCATTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

79

Amino Acids

8.58

Weight (kDa)

4.08

Isoelectric Point (pI)

20.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 131, 213
AclWI GGATC 2 cut(s) 43, 128
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 25
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 3 cut(s) 37, 106, 208
AluI AGCT 3 cut(s) 37, 106, 208
Alw21I GWGCWC 2 cut(s) 39, 108
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 43, 128
AlwNI CAGNNNCTG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 8
BanII GRGCYC 2 cut(s) 39, 108
Bbv12I GWGCWC 2 cut(s) 39, 108
BceAI ACGGC 3 cut(s) 85, 196, 202
BcgI CGANNNNNNTGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 39, 108
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 39, 108
Bsp143I GATC 3 cut(s) 48, 120, 192
BspACI CCGC 2 cut(s) 131, 213
BspHI TCATGA 1 cut(s) 233
BspPI GGATC 2 cut(s) 43, 128
BsrI ACTGG 1 cut(s) 131
BssMI GATC 3 cut(s) 48, 120, 192
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 156
BstKTI GATC 3 cut(s) 51, 123, 195
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 48, 120, 192
BstMCI CGRYCG 1 cut(s) 44
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 148
CciI TCATGA 1 cut(s) 233
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 100, 234
CviJI RGCY 5 cut(s) 9, 37, 106, 189, 208
CviKI_1 RGCY 5 cut(s) 9, 37, 106, 189, 208
CviQI GTAC 1 cut(s) 61
DpnI GATC 3 cut(s) 50, 122, 194
DpnII GATC 3 cut(s) 48, 120, 192
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 2 cut(s) 37, 106
Eco24I GRGCYC 2 cut(s) 39, 108
Eco53kI GAGCTC 2 cut(s) 37, 106
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 37, 106
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 39, 108
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 103, 237
FaiI YATR 2 cut(s) 101, 235
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 2 cut(s) 99, 233
FblI GTMKAC 1 cut(s) 168
FriOI GRGCYC 2 cut(s) 39, 108
GsuI CTGGAG 1 cut(s) 74
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 103, 237
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 3 cut(s) 16, 61, 169
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 3 cut(s) 16, 61, 169
Hpy99I CGWCG 3 cut(s) 28, 71, 182
HpyAV CCTTC 3 cut(s) 145, 169, 231
HpyCH4V TGCA 1 cut(s) 142
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 103, 237
Kzo9I GATC 3 cut(s) 48, 120, 192
LmnI GCTCC 2 cut(s) 42, 103
LpnPI CCDG 5 cut(s) 38, 53, 61, 65, 112
LweI GCATC 1 cut(s) 129
MalI GATC 3 cut(s) 50, 122, 194
MboI GATC 3 cut(s) 48, 120, 192
MhlI GDGCHC 2 cut(s) 39, 108
MnlI CCTC 4 cut(s) 20, 22, 49, 88
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 120, 192
NlaIII CATG 2 cut(s) 103, 237
PagI TCATGA 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 162
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 51
Psp124BI GAGCTC 2 cut(s) 39, 108
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 148
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 2 cut(s) 39, 108
Sau3AI GATC 3 cut(s) 48, 120, 192
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 39, 108
SetI ASST 7 cut(s) 21, 39, 60, 80, 99, 108, 210
SfaNI GCATC 1 cut(s) 129
SsiI CCGC 2 cut(s) 131, 213
SstI GAGCTC 2 cut(s) 39, 108
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 4 cut(s) 44, 84, 177, 191
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 70, 219
TspGWI ACGGA 2 cut(s) 41, 154
TspRI CASTG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.