Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

1065778 .. 1066392

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTTTCAAATCCCTCTTCTCCCGGAAGAAGAAATCCAGTCGCGACGCCGCCGCTGCCCACCCCGACGCCGCGTCCACTGCCCACCCCGCCGCCTCCGCCGCTGCCCACCCCGCCGCCGCTTCAGCCCACTCGCGAACCCCCTCCTTCCATTCGCGCGCCCAGATCGCCGAGCTCGACCAAGTCTTCAAGAAATTCGACGTCAATGGCGACGGAAAGATCTCGTCTTCCGAGCTCGGAGCCATCATGAGCAGCCTGGGGCAGCCGTCCTCCGACGAGGAGCTCAATAGCATGATCTCCGAGGTCGATTCGGACGGCGACGGCTTCATCAACTTCAAAGAGTTCGTTGAGCTCAACACCAAAGGGGTCGACTCCGCCGAGGCCCTCGAAAATCTCAAAGATGCTTTCTCCGTCTACGACATTGACGGGAACGGGTCTATTTCGGCGGAGGAATTGTACGAAGTGCTCCGGAGCTTGGGAGACGAATGTTCGATCGACGAATGCCGGAAGATGATCGGCGGCGTCGACAGTGACGGCGACGGTATGATCAGTTTCGAGGAGTTTAAGGTCATGATGATGACGGGATCGCATTACATTGATCCGGCTTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

205

Amino Acids

21.66

Weight (kDa)

4.58

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	58 - 86	1.8e-08	EF hand domain
EF-hand_7	PF13499	58 - 118	7.1e-16	EF-hand domain pair
EF-hand_6	PF13405	58 - 87	1.3e-07	EF-hand domain
EF-hand_5	PF13202	59 - 83	5e-08	EF hand
EF-hand_8	PF13833	71 - 118	3.8e-09	EF-hand domain pair
EF-hand_1	PF00036	94 - 118	5.2e-07	EF hand domain
EF-hand_7	PF13499	130 - 192	3e-14	EF-hand domain pair
EF-hand_1	PF00036	132 - 159	1.8e-06	EF hand domain
EF-hand_6	PF13405	132 - 160	5.3e-08	EF-hand domain
EF-hand_8	PF13833	144 - 192	9.1e-10	EF-hand domain pair
EF-hand_1	PF00036	167 - 194	6.9e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccI	GTMKAC	3 cut(s)	369, 414, 525
AccII	CGCG	5 cut(s)	45, 74, 136, 157, 159
AccIII	TCCGGA	1 cut(s)	468
AclWI	GGATC	2 cut(s)	592, 593
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	2 cut(s)	108, 591
AcyI	GRCGYC	4 cut(s)	48, 69, 201, 522
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	475, 608
AgsI	TTSAA	3 cut(s)	10, 190, 337
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	5 cut(s)	175, 235, 283, 352, 474
AluI	AGCT	5 cut(s)	175, 235, 283, 352, 474
Alw21I	GWGCWC	5 cut(s)	177, 237, 285, 354, 468
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	592, 593
Aor13HI	TCCGGA	1 cut(s)	468
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	4 cut(s)	56, 104, 252, 262
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	159, 161
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	25
BanII	GRGCYC	4 cut(s)	177, 237, 285, 354
BbsI	GAAGAC	2 cut(s)	178, 219
Bbv12I	GWGCWC	5 cut(s)	177, 237, 285, 354, 468
BbvI	GCAGC	4 cut(s)	43, 91, 264, 274
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	4 cut(s)	250, 331, 337, 550
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	474
BglII	AGATCT	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	25, 257
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	25, 257
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	178, 219
BpuMI	CCSGG	1 cut(s)	25
BsaHI	GRCGYC	4 cut(s)	48, 69, 201, 522
BsaJI	CCNNGG	3 cut(s)	256, 300, 378
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 608
Bse1I	ACTGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	256, 300, 378
BseLI	CCNNNNNNNGG	2 cut(s)	475, 608
BseNI	ACTGG	1 cut(s)	39
BsePI	GCGCGC	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	293, 572
BseXI	GCAGC	4 cut(s)	43, 91, 264, 274
Bsh1236I	CGCG	5 cut(s)	45, 74, 136, 157, 159
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	5 cut(s)	177, 237, 285, 354, 468
BsiSI	CCGG	4 cut(s)	25, 469, 505, 602
BslI	CCNNNNNNNGG	2 cut(s)	475, 608
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	5 cut(s)	177, 237, 285, 354, 468
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
Bsp68I	TCGCGA	2 cut(s)	45, 136
BspANI	GGCC	1 cut(s)	383
BspEI	TCCGGA	1 cut(s)	468
BspFNI	CGCG	5 cut(s)	45, 74, 136, 157, 159
BspHI	TCATGA	2 cut(s)	246, 570
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	592, 593
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	256, 300, 378
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
BssNI	GRCGYC	4 cut(s)	48, 69, 201, 522
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	530, 542
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	4 cut(s)	48, 69, 201, 522
BstC8I	GCNNGC	1 cut(s)	159
BstFNI	CGCG	5 cut(s)	45, 74, 136, 157, 159
BstHHI	GCGC	2 cut(s)	159, 161
BstKTI	GATC	8 cut(s)	168, 222, 297, 495, 516, 549, 587, 601
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 80, 89, 98, 101, 113, 125, 167
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	23, 255
BstUI	CGCG	5 cut(s)	45, 74, 136, 157, 159
BstV1I	GCAGC	4 cut(s)	43, 91, 264, 274
BstV2I	GAAGAC	2 cut(s)	178, 219
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 535
BtuMI	TCGCGA	2 cut(s)	45, 136
Cac8I	GCNNGC	1 cut(s)	159
CciI	TCATGA	2 cut(s)	246, 570
CfoI	GCGC	2 cut(s)	159, 161
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	4 cut(s)	56, 63, 77, 511
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	3 cut(s)	247, 292, 571
CviQI	GTAC	1 cut(s)	457
DpnI	GATC	8 cut(s)	167, 221, 296, 494, 515, 548, 586, 600
DpnII	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	3 cut(s)	88, 364, 461
Ecl136II	GAGCTC	4 cut(s)	175, 235, 283, 352
Eco24I	GRGCYC	4 cut(s)	177, 237, 285, 354
Eco53kI	GAGCTC	4 cut(s)	175, 235, 283, 352
Eco57I	CTGAAG	2 cut(s)	108, 591
EcoICRI	GAGCTC	4 cut(s)	175, 235, 283, 352
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	4 cut(s)	177, 237, 285, 354
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	3 cut(s)	250, 295, 574
FaiI	YATR	4 cut(s)	248, 293, 545, 572
FatI	CATG	3 cut(s)	246, 291, 570
FauI	CCCGC	2 cut(s)	97, 121
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	3 cut(s)	369, 414, 525
FriOI	GRGCYC	4 cut(s)	177, 237, 285, 354
GlaI	GCGC	2 cut(s)	158, 160
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	4 cut(s)	25, 469, 505, 602
HgaI	GACGC	4 cut(s)	56, 63, 77, 511
HhaI	GCGC	2 cut(s)	159, 161
Hin1I	GRCGYC	4 cut(s)	48, 69, 201, 522
Hin1II	CATG	3 cut(s)	250, 295, 574
Hin6I	GCGC	2 cut(s)	157, 159
HinP1I	GCGC	2 cut(s)	157, 159
HincII	GTYRAC	2 cut(s)	370, 526
HindII	GTYRAC	2 cut(s)	370, 526
HinfI	GANTC	2 cut(s)	308, 371
HpaII	CCGG	4 cut(s)	25, 469, 505, 602
Hpy166II	GTNNAC	4 cut(s)	78, 370, 415, 526
Hpy188I	TCNGA	5 cut(s)	232, 239, 274, 301, 313
Hpy188III	TCNNGA	6 cut(s)	44, 135, 190, 247, 469, 571
Hpy8I	GTNNAC	4 cut(s)	78, 370, 415, 526
Hpy99I	CGWCG	9 cut(s)	50, 71, 203, 215, 278, 323, 500, 527, 542
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	530, 542
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 80, 89, 98, 101, 113, 125, 167
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	4 cut(s)	48, 69, 201, 522
Hsp92II	CATG	3 cut(s)	250, 295, 574
HspAI	GCGC	2 cut(s)	157, 159
Kpn2I	TCCGGA	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
LmnI	GCTCC	4 cut(s)	239, 280, 471, 471
LpnPI	CCDG	8 cut(s)	38, 52, 176, 242, 269, 482, 518, 594
Lsp1109I	GCAGC	4 cut(s)	43, 91, 264, 274
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	8 cut(s)	167, 221, 296, 494, 515, 548, 586, 600
MboI	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
MboII	GAAGA	6 cut(s)	10, 40, 43, 178, 219, 520
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	5 cut(s)	177, 237, 285, 354, 468
MluCI	AATT	2 cut(s)	194, 452
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	468
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	56, 104
MspI	CCGG	4 cut(s)	25, 469, 505, 602
MspR9I	CCNGG	2 cut(s)	25, 257
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	5 cut(s)	45, 74, 136, 157, 159
MwoI	GCNNNNNNNGC	8 cut(s)	56, 80, 89, 98, 101, 113, 125, 167
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
NlaIII	CATG	3 cut(s)	250, 295, 574
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	2 cut(s)	196, 403
NmuCI	GTSAC	1 cut(s)	530
NruI	TCGCGA	2 cut(s)	45, 136
PagI	TCATGA	2 cut(s)	246, 570
PauI	GCGCGC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	4 cut(s)	174, 207, 375, 522
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	23
Ple19I	CGATCG	1 cut(s)	495
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp124BI	GAGCTC	4 cut(s)	177, 237, 285, 354
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	182
PteI	GCGCGC	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	495
RruI	TCGCGA	2 cut(s)	45, 136
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	4 cut(s)	177, 237, 285, 354
SalI	GTCGAC	2 cut(s)	368, 524
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	8 cut(s)	165, 219, 294, 492, 513, 546, 584, 598
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	25, 257
SduI	GDGCHC	5 cut(s)	177, 237, 285, 354, 468
SetI	ASST	9 cut(s)	177, 204, 237, 285, 306, 354, 476, 570, 613
SfaNI	GCATC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	2 cut(s)	194, 452
SstI	GAGCTC	4 cut(s)	177, 237, 285, 354
StyD4I	CCNGG	2 cut(s)	23, 255
TaaI	ACNGT	2 cut(s)	530, 542
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	9 cut(s)	177, 198, 306, 369, 387, 491, 495, 525, 555
TasI	AATT	2 cut(s)	194, 452
TauI	GCSGC	8 cut(s)	53, 56, 74, 95, 104, 119, 122, 522
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	85, 535
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	4 cut(s)	56, 104, 252, 262
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	2 cut(s)	228, 400
TspRI	CASTG	2 cut(s)	85, 535
Tth111I	GACNNNGTC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	3 cut(s)	369, 414, 525
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.