Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

41737613 .. 41738432

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G505300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTCAGATAAGCTCTCTCTCTGCAGAAACTGAGACACTGAGCCAAGTCCTAGGCCTGGTAGAAGCATTCAAAGCCTTTGATGCAGACAATGATGGGAAGATCAATGCTGCAGAGCTTGGAGGGATTTTGGGGTCACTTGGGTATCAGGCAAGTGAGCAAGATGTGAGGGCAATGATGCAGCAAGGGGACACAAACAGAGATGGGTTTCTGAGCATAGAGGAGTTCTTGGGCATGAACACAAAGAACTTGGAATTTGGGGGGCTTGAAAATGTCCTCAAGAACGCTTTTGAAGCCTTGGATGTTGATGGGGACGAGGTTGTGACTGCTGAGGAGCTTTATGAGGTTGTGGGGGATGATTTGGGTTATGAGTTGTCTCTTGAAGACTGTCAGGGGATTATTGCTTCAATTGATATAGATGGAGATGGGGCTGTTAGCTTTGAGGACTTCAAACTAATAGTCAATTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

158

Amino Acids

16.8

Weight (kDa)

4.05

Isoelectric Point (pI)

16.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	73, 269, 293, 383, 408, 451
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	4 cut(s)	15, 118, 337, 438
AluI	AGCT	4 cut(s)	15, 118, 337, 438
Alw26I	GTCTC	2 cut(s)	29, 381
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	110, 181
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	1 cut(s)	444
AspA2I	CCTAGG	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BbsI	GAAGAC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	97, 193
BccI	CCATC	5 cut(s)	89, 197, 302, 413, 419
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	29, 381
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	24, 111
BisI	GCNGC	2 cut(s)	111, 182
BlnI	CCTAGG	1 cut(s)	52
BlsI	GCNGC	2 cut(s)	112, 183
Bme1390I	CCNGG	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	73, 168
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	52, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	52, 297
BseGI	GGATG	2 cut(s)	307, 361
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	5 cut(s)	20, 24, 32, 203, 321
BseRI	GAGGAG	2 cut(s)	236, 347
BseXI	GCAGC	2 cut(s)	97, 193
BshFI	GGCC	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	203, 326
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	29, 381
BsmFI	GGGAC	2 cut(s)	203, 326
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	5 cut(s)	19, 25, 33, 204, 322
BspMAI	CTGCAG	2 cut(s)	28, 115
BsrDI	GCAATG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	52, 297
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	52, 297
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	389
BstDEI	CTNAG	5 cut(s)	6, 33, 41, 212, 330
BstF5I	GGATG	2 cut(s)	307, 361
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	29, 381
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 293
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	2 cut(s)	24, 111
BstV1I	GCAGC	2 cut(s)	97, 193
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	307, 361
BtsIMutI	CAGTG	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	32
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	5 cut(s)	6, 33, 41, 212, 330
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	52, 297
Eco147I	AGGCCT	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	52, 297
ErhI	CCWWGG	2 cut(s)	52, 297
FaeI	CATG	1 cut(s)	238
FaiI	YATR	5 cut(s)	218, 236, 342, 369, 416
FaqI	GGGAC	2 cut(s)	203, 326
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	111, 182
FokI	GGATG	2 cut(s)	314, 368
Fsp4HI	GCNGC	2 cut(s)	111, 182
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	111, 182
HaeIII	GGCC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	9, 213, 473
Hpy188III	TCNNGA	2 cut(s)	280, 380
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	26, 86, 113, 181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 293
HpyF3I	CTNAG	5 cut(s)	6, 33, 41, 212, 330
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	4 cut(s)	44, 71, 134, 377
Lsp1109I	GCAGC	2 cut(s)	97, 193
LweI	GCATC	2 cut(s)	73, 168
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	135, 322
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	112, 395
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	3 cut(s)	254, 408, 463
MnlI	CCTC	8 cut(s)	116, 162, 214, 287, 310, 325, 337, 436
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 293
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	135, 322
PceI	AGGCCT	1 cut(s)	57
PctI	GAATGC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	112, 183
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PstI	CTGCAG	2 cut(s)	28, 115
PstNI	CAGNNNCTG	1 cut(s)	32
SatI	GCNGC	2 cut(s)	111, 182
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	6 cut(s)	17, 120, 321, 339, 348, 440
SfaNI	GCATC	2 cut(s)	73, 168
SfcI	CTRYAG	2 cut(s)	24, 111
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	254, 408, 463
SseBI	AGGCCT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	52, 297
TaaI	ACNGT	1 cut(s)	389
TasI	AATT	3 cut(s)	254, 408, 463
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	135, 322
TseI	GCWGC	2 cut(s)	110, 181
Tsp45I	GTSAC	2 cut(s)	135, 322
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	254
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.