Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

31812801 .. 31813862

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTCAAATCCCTCTTCTCCCGGAAGAAGAAGTCCACTCCCTCCTCCGCCGCCGCGCCCTTGGTGATGCGCTCGCCGTCGTTCGCCACCCGCGCGCAGATCGCCGAGCTGGAGCAGGTCTTCAACAAATTCGACGTCAACGGCGACGGCAAGATCTCGTCGTCGGAGCTCGGCGCGATCATGGGGAGCCTCGGCCACCCGGCGACGGAGGACGAGCTCCGGTCGATGATCCTGGAGGTCGACGCCGACGGCGACGGGTTCATCGACATCAACGAGTTCGTGGAGCTCAACACCAAAGGGATCGACTCGGCGGAGGCGTTGCAGAACCTCCGGGACGCCTTCTCCGTCTACGACAAAGACGGCAACGGCTCGATCTCGGCGGAGGAGCTCTTCGAGGTGCTCAAGAGCTTGGGCGACGAGTGCTCCCTCGCCGAGTGCCGGAAAATGATCGGCGGCGTCGACGCCGACGGCGACGGTATGATCAACTTTGAGGAGTTTAAAGTGATGATGATGATCGGCTCTCGTCATGATAACAATGCTCAACCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

185

Amino Acids

19.91

Weight (kDa)

4.49

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	37 - 64	1.1e-07	EF hand domain
EF-hand_7	PF13499	37 - 97	7.6e-14	EF-hand domain pair
EF-hand_6	PF13405	37 - 66	1e-07	EF-hand domain
EF-hand_5	PF13202	38 - 62	4.6e-08	EF hand
EF-hand_1	PF00036	73 - 97	2e-06	EF hand domain
EF-hand_7	PF13499	110 - 171	2.8e-14	EF-hand domain pair
EF-hand_1	PF00036	111 - 138	1.7e-07	EF hand domain
EF-hand_6	PF13405	111 - 139	1.3e-08	EF-hand domain
EF-hand_8	PF13833	123 - 171	4e-08	EF-hand domain pair
EF-hand_1	PF00036	146 - 172	1.8e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	109
AccI	GTMKAC	3 cut(s)	243, 351, 462
AccII	CGCG	4 cut(s)	59, 96, 98, 179
AciI	CCGC	7 cut(s)	51, 54, 57, 94, 314, 383, 456
AclWI	GGATC	2 cut(s)	226, 311
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
AfiI	CCNNNNNNNGG	2 cut(s)	208, 441
AgsI	TTSAA	2 cut(s)	10, 127
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	112, 172, 220, 289, 391, 411
AluI	AGCT	6 cut(s)	112, 172, 220, 289, 391, 411
Alw21I	GWGCWC	6 cut(s)	174, 222, 291, 393, 405, 428
AlwI	GGATC	2 cut(s)	226, 311
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspLEI	GCGC	5 cut(s)	61, 75, 98, 100, 179
AsuC2I	CCSGG	3 cut(s)	25, 203, 335
AsuHPI	GGTGA	1 cut(s)	79
BanII	GRGCYC	4 cut(s)	174, 222, 291, 393
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	6 cut(s)	174, 222, 291, 393, 405, 428
BceAI	ACGGC	7 cut(s)	64, 160, 166, 268, 379, 385, 487
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	3 cut(s)	25, 203, 335
BfuAI	ACCTGC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	3 cut(s)	54, 57, 457
BlsI	GCNGC	3 cut(s)	55, 58, 458
Bme1390I	CCNGG	4 cut(s)	25, 203, 236, 335
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	4 cut(s)	25, 203, 236, 335
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	2 cut(s)	134, 257
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	3 cut(s)	25, 203, 335
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
BsaJI	CCNNGG	2 cut(s)	63, 193
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 441
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	63, 193
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	208, 441
BsePI	GCGCGC	1 cut(s)	96
BseRI	GAGGAG	3 cut(s)	37, 401, 509
Bsh1236I	CGCG	4 cut(s)	59, 96, 98, 179
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	227
BsiHKAI	GWGCWC	6 cut(s)	174, 222, 291, 393, 405, 428
BsiSI	CCGG	5 cut(s)	25, 203, 223, 334, 442
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	208, 441
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	6 cut(s)	174, 222, 291, 393, 405, 428
Bsp143I	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
BspACI	CCGC	7 cut(s)	51, 54, 57, 94, 314, 383, 456
BspANI	GGCC	1 cut(s)	198
BspFNI	CGCG	4 cut(s)	59, 96, 98, 179
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	226, 311
BspQI	GCTCTTC	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	63, 193
BssHII	GCGCGC	1 cut(s)	96
BssMI	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
BssNI	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	23, 398
BstACI	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
BstC8I	GCNNGC	2 cut(s)	77, 98
BstDEI	CTNAG	1 cut(s)	549
BstFNI	CGCG	4 cut(s)	59, 96, 98, 179
BstHHI	GCGC	5 cut(s)	61, 75, 98, 100, 179
BstKTI	GATC	9 cut(s)	105, 159, 183, 234, 306, 378, 453, 486, 519
BstMBI	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 104, 423
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	4 cut(s)	23, 201, 234, 333
BstUI	CGCG	4 cut(s)	59, 96, 98, 179
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	77, 98
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	5 cut(s)	61, 75, 98, 100, 179
CseI	GACGC	4 cut(s)	254, 347, 448, 473
CviAII	CATG	2 cut(s)	184, 530
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	9 cut(s)	104, 158, 182, 233, 305, 377, 452, 485, 518
DpnII	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
DraI	TTTAAA	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	23, 398
EarI	CTCTTC	2 cut(s)	23, 398
EciI	GGCGGA	3 cut(s)	40, 329, 398
Ecl136II	GAGCTC	4 cut(s)	172, 220, 289, 391
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	4 cut(s)	174, 222, 291, 393
Eco53kI	GAGCTC	4 cut(s)	172, 220, 289, 391
EcoICRI	GAGCTC	4 cut(s)	172, 220, 289, 391
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	4 cut(s)	174, 222, 291, 393
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	187, 533
FaiI	YATR	3 cut(s)	185, 482, 531
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	183, 529
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	3 cut(s)	243, 351, 462
Fnu4HI	GCNGC	3 cut(s)	54, 57, 457
FriOI	GRGCYC	4 cut(s)	174, 222, 291, 393
Fsp4HI	GCNGC	3 cut(s)	54, 57, 457
GlaI	GCGC	5 cut(s)	60, 74, 97, 99, 178
GluI	GCNGC	3 cut(s)	54, 57, 457
GsuI	CTGGAG	2 cut(s)	134, 257
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	5 cut(s)	25, 203, 223, 334, 442
HgaI	GACGC	4 cut(s)	254, 347, 448, 473
HhaI	GCGC	5 cut(s)	61, 75, 98, 100, 179
Hin1I	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
Hin1II	CATG	2 cut(s)	187, 533
Hin6I	GCGC	5 cut(s)	59, 73, 96, 98, 177
HinP1I	GCGC	5 cut(s)	59, 73, 96, 98, 177
HincII	GTYRAC	3 cut(s)	142, 244, 463
HindII	GTYRAC	3 cut(s)	142, 244, 463
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	5 cut(s)	25, 203, 223, 334, 442
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	5 cut(s)	39, 142, 244, 352, 463
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	406, 530
Hpy8I	GTNNAC	5 cut(s)	39, 142, 244, 352, 463
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 104, 423
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	5 cut(s)	138, 246, 339, 459, 465
Hsp92II	CATG	2 cut(s)	187, 533
HspAI	GCGC	5 cut(s)	59, 73, 96, 98, 177
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
LguI	GCTCTTC	1 cut(s)	398
LmnI	GCTCC	7 cut(s)	115, 169, 189, 225, 286, 388, 431
LpnPI	CCDG	9 cut(s)	38, 98, 104, 216, 221, 236, 248, 347, 455
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	138
MalI	GATC	9 cut(s)	104, 158, 182, 233, 305, 377, 452, 485, 518
MboI	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
MboII	GAAGA	5 cut(s)	10, 40, 43, 115, 385
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	6 cut(s)	174, 222, 291, 393, 405, 428
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	1 cut(s)	501
MspI	CCGG	5 cut(s)	25, 203, 223, 334, 442
MspR9I	CCNGG	4 cut(s)	25, 203, 236, 335
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	4 cut(s)	59, 96, 98, 179
MwoI	GCNNNNNNNGC	3 cut(s)	95, 104, 423
NciI	CCSGG	3 cut(s)	25, 203, 335
NdeII	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
NlaIII	CATG	2 cut(s)	187, 533
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	6 cut(s)	133, 153, 174, 290, 359, 460
PagI	TCATGA	1 cut(s)	529
PauI	GCGCGC	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	8 cut(s)	144, 252, 264, 273, 317, 345, 459, 471
PfoI	TCCNGGA	3 cut(s)	23, 234, 333
PkrI	GCNGC	3 cut(s)	55, 58, 458
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	4 cut(s)	174, 222, 291, 393
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	156
PteI	GCGCGC	1 cut(s)	96
SacI	GAGCTC	4 cut(s)	174, 222, 291, 393
SalI	GTCGAC	2 cut(s)	242, 461
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	3 cut(s)	54, 57, 457
Sau3AI	GATC	9 cut(s)	102, 156, 180, 231, 303, 375, 450, 483, 516
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	25, 203, 236, 335
SduI	GDGCHC	6 cut(s)	174, 222, 291, 393, 405, 428
SfaNI	GCATC	1 cut(s)	60
SgrDI	CGTCGACG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	7 cut(s)	51, 54, 57, 94, 314, 383, 456
SstI	GAGCTC	4 cut(s)	174, 222, 291, 393
StyD4I	CCNGG	4 cut(s)	23, 201, 234, 333
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	8 cut(s)	135, 227, 243, 267, 306, 374, 396, 462
TasI	AATT	1 cut(s)	131
TauI	GCSGC	3 cut(s)	56, 59, 459
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	2 cut(s)	224, 337
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	3 cut(s)	243, 351, 462
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.