Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8148428.1

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 567

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8148428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

atgggtttcaaatccctcttctcccggaagaagaaatccactccctccagcgccggcgccgctcagcctgcggtgatgcggtcaccgtcgttcaacacgggggcgcagatcgccgagctggagcaggtcttcaagaaattcgacgtcaacggcgacggcaagatctcgtcgtcggagctcggcgcgatcatgggcagcctgggccacccggcgacggaggacgagctccggtccatgatcctcgaggtcgacgccgacggcgacggcttcatcgacttcaaggagttcgtggagctcaacaccaaggggatcgactccgccgaggcgttgcagaatctcaaggacgccttctccgtctacgacatcgacggcaacggctcgatctccgcggaggagctcttcgaggtgctgaggagcttgggcgacgagtgctcgatcggcgagtgccggaaaatgatcagcggcgtcgatgccgacggcgacggtatgatcaattttgaggagtttaaagaaatgatgatgatggggtcgcgttttgagaataatgctcaacctcaacctcaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

189

Amino Acids

20.46

Weight (kDa)

4.41

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AbsI	CCTCGAGG	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	249, 357
AccII	CGCG	3 cut(s)	185, 389, 532
AciI	CCGC	7 cut(s)	60, 71, 79, 318, 387, 389, 462
AclWI	GGATC	2 cut(s)	232, 317
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	10, 94, 133, 280
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	6 cut(s)	118, 178, 226, 295, 397, 417
AluI	AGCT	6 cut(s)	118, 178, 226, 295, 397, 417
Alw21I	GWGCWC	5 cut(s)	180, 228, 297, 399, 434
AlwI	GGATC	2 cut(s)	232, 317
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	4 cut(s)	53, 59, 106, 185
AspS9I	GGNCC	2 cut(s)	202, 231
AsuC2I	CCSGG	2 cut(s)	25, 209
AsuHPI	GGTGA	2 cut(s)	75, 85
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	4 cut(s)	180, 228, 297, 399
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	5 cut(s)	180, 228, 297, 399, 434
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	7 cut(s)	166, 172, 274, 280, 385, 391, 493
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	2 cut(s)	456, 489
BcnI	CCSGG	2 cut(s)	25, 209
BfoI	RGCGCY	2 cut(s)	54, 60
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	3 cut(s)	60, 196, 463
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	61, 197, 464
Bme1390I	CCNGG	3 cut(s)	25, 200, 209
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	202, 231
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	25, 200, 209
BmsI	GCATC	2 cut(s)	66, 460
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	2 cut(s)	31, 140
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	2 cut(s)	25, 209
BsaHI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
BsaJI	CCNNGG	4 cut(s)	199, 303, 321, 387
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	4 cut(s)	199, 303, 321, 387
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	77, 401
BseRI	GAGGAG	3 cut(s)	407, 427, 515
BseXI	GCAGC	1 cut(s)	207
Bsh1236I	CGCG	3 cut(s)	185, 389, 532
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	5 cut(s)	180, 228, 297, 399, 434
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	25, 54, 209, 229, 448
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	5 cut(s)	180, 228, 297, 399, 434
Bsp143I	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	7 cut(s)	60, 71, 79, 318, 387, 389, 462
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	76, 402
BspFNI	CGCG	3 cut(s)	185, 389, 532
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	232, 317
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	199, 303, 321, 387
BssMI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
BssNI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	87, 485
Bst6I	CTCTTC	2 cut(s)	23, 404
BstACI	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
BstC8I	GCNNGC	2 cut(s)	55, 69
BstDEI	CTNAG	2 cut(s)	63, 410
BstDSI	CCRYGG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	185, 389, 532
BstH2I	RGCGCY	2 cut(s)	54, 60
BstHHI	GCGC	4 cut(s)	53, 59, 106, 185
BstKTI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
BstMBI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	23, 198, 207
BstUI	CGCG	3 cut(s)	185, 389, 532
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	55, 69
CfoI	GCGC	4 cut(s)	53, 59, 106, 185
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	202, 231
Cfr42I	CCGCGG	1 cut(s)	390
CseI	GACGC	3 cut(s)	260, 353, 454
CviAII	CATG	2 cut(s)	190, 235
DdeI	CTNAG	2 cut(s)	63, 410
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	9 cut(s)	110, 164, 188, 239, 311, 383, 437, 458, 491
DpnII	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	23, 404
EarI	CTCTTC	2 cut(s)	23, 404
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	4 cut(s)	178, 226, 295, 397
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	4 cut(s)	180, 228, 297, 399
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	4 cut(s)	178, 226, 295, 397
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	4 cut(s)	178, 226, 295, 397
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	4 cut(s)	180, 228, 297, 399
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	193, 238
FaiI	YATR	3 cut(s)	191, 236, 488
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	2 cut(s)	189, 234
FbaI	TGATCA	2 cut(s)	456, 489
FblI	GTMKAC	2 cut(s)	249, 357
Fnu4HI	GCNGC	3 cut(s)	60, 196, 463
FriOI	GRGCYC	4 cut(s)	180, 228, 297, 399
Fsp4HI	GCNGC	3 cut(s)	60, 196, 463
GlaI	GCGC	4 cut(s)	52, 58, 105, 184
GluI	GCNGC	3 cut(s)	60, 196, 463
GsuI	CTGGAG	2 cut(s)	31, 140
HaeII	RGCGCY	2 cut(s)	54, 60
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	5 cut(s)	25, 54, 209, 229, 448
HgaI	GACGC	3 cut(s)	260, 353, 454
HhaI	GCGC	4 cut(s)	53, 59, 106, 185
Hin1I	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
Hin1II	CATG	2 cut(s)	193, 238
Hin6I	GCGC	4 cut(s)	51, 57, 104, 183
HinP1I	GCGC	4 cut(s)	51, 57, 104, 183
HincII	GTYRAC	2 cut(s)	148, 250
HindII	GTYRAC	2 cut(s)	148, 250
HinfI	GANTC	2 cut(s)	314, 334
HpaII	CCGG	5 cut(s)	25, 54, 209, 229, 448
HphI	GGTGA	2 cut(s)	75, 85
Hpy166II	GTNNAC	3 cut(s)	148, 250, 358
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	3 cut(s)	148, 250, 358
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	87, 485
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
HpyF3I	CTNAG	2 cut(s)	63, 410
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	5 cut(s)	57, 144, 252, 345, 465
Hsp92II	CATG	2 cut(s)	193, 238
HspAI	GCGC	4 cut(s)	51, 57, 104, 183
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	456, 489
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	6 cut(s)	121, 175, 231, 292, 394, 414
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	66, 460
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	9 cut(s)	110, 164, 188, 239, 311, 383, 437, 458, 491
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
MboII	GAAGA	5 cut(s)	10, 40, 43, 121, 391
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	5 cut(s)	180, 228, 297, 399, 434
MluCI	AATT	2 cut(s)	137, 493
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	153
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	389, 462
MspI	CCGG	5 cut(s)	25, 54, 209, 229, 448
MspR9I	CCNGG	3 cut(s)	25, 200, 209
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	3 cut(s)	185, 389, 532
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 110, 201, 429, 438
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	25, 209
NdeII	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	193, 238
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	3 cut(s)	139, 159, 346
NmuCI	GTSAC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	5 cut(s)	150, 258, 270, 318, 351
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	61, 197, 464
Ple19I	CGATCG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	4 cut(s)	180, 228, 297, 399
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	202, 231
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	438
SacI	GAGCTC	4 cut(s)	180, 228, 297, 399
SacII	CCGCGG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	60, 196, 463
Sau3AI	GATC	9 cut(s)	108, 162, 186, 237, 309, 381, 435, 456, 489
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	25, 200, 209
SduI	GDGCHC	5 cut(s)	180, 228, 297, 399, 434
SfaNI	GCATC	2 cut(s)	66, 460
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	242, 338
SmoI	CTYRAG	2 cut(s)	242, 338
Sse9I	AATT	2 cut(s)	137, 493
SsiI	CCGC	7 cut(s)	60, 71, 79, 318, 387, 389, 462
SspDI	GGCGCC	1 cut(s)	56
SstI	GAGCTC	4 cut(s)	180, 228, 297, 399
StyD4I	CCNGG	3 cut(s)	23, 198, 207
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	87, 485
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	137, 493
TauI	GCSGC	2 cut(s)	62, 465
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	230, 343
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	249, 357
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.