Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

55969744 .. 55970325

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG410400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTTTCAAATCCCTCTTCTCCCGGAAGAAGAAATCCACTCCCTCCAGCGCCGGCGCCGCTCAGCCGGCGGCGGTGATGCGTTCACCGTCGTTCAACACGCGGGCGCAGATCGCTGAGCTGGAGCAGGTCTTCAAGAAATTCGACGTCAACGGCGACGGCAAGATCTCGTCGTCGGAGCTCGGCGCGATCATGGGCAGCCTGGGCCACCCGGCGACGGAGGACGAGCTCCGGTCCATGATCCTCGAGGTCGACGCCGACGGCGACGGCTTCATCGACTTCAAGGAGTTCGTGGAGCTCAACACCAACGGGATCGACTCCGCCGAGGCGTTGCAGAATCTCAAGGACGCCTTCTCCGTCTACGACATCGACGGCAACGGCTCGATCTCCGCGGAGGAGCTCTTCGAGGTGCTGAGGAGCTTGGGCGACGAGTGCTCGATCGGCGAGTGCCGGAAAATGATCGGCGGCGTCGATGCCGACGGCGACGGTATGATCAATTTCGAGGAGTTTAAAGAGATGATGATGATGGGGTCGCGTTATGAGAATAATGCTCAACCTCAACCTCAACCTGTTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

193

Amino Acids

20.87

Weight (kDa)

4.41

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	40 - 67	7e-08	EF hand domain
EF-hand_7	PF13499	40 - 100	7.1e-15	EF-hand domain pair
EF-hand_6	PF13405	40 - 69	9.8e-08	EF-hand domain
EF-hand_5	PF13202	41 - 65	5.3e-08	EF hand
EF-hand_8	PF13833	53 - 100	2.3e-06	EF-hand domain pair
EF-hand_1	PF00036	76 - 100	6.4e-07	EF hand domain
EF-hand_7	PF13499	113 - 175	2e-14	EF-hand domain pair
EF-hand_1	PF00036	114 - 141	8.5e-07	EF hand domain
EF-hand_6	PF13405	114 - 142	8.4e-08	EF-hand domain
EF-hand_8	PF13833	126 - 174	3.5e-07	EF-hand domain pair
EF-hand_1	PF00036	149 - 176	3.7e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AbsI	CCTCGAGG	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	252, 360
AccII	CGCG	4 cut(s)	103, 188, 392, 535
AciI	CCGC	8 cut(s)	60, 71, 74, 103, 321, 390, 392, 465
AclWI	GGATC	2 cut(s)	235, 320
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	10, 97, 136, 283
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	6 cut(s)	121, 181, 229, 298, 400, 420
AluI	AGCT	6 cut(s)	121, 181, 229, 298, 400, 420
Alw21I	GWGCWC	5 cut(s)	183, 231, 300, 402, 437
AlwI	GGATC	2 cut(s)	235, 320
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	4 cut(s)	53, 59, 109, 188
AspS9I	GGNCC	2 cut(s)	205, 234
AsuC2I	CCSGG	2 cut(s)	25, 212
AsuHPI	GGTGA	2 cut(s)	78, 88
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	4 cut(s)	183, 231, 300, 402
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	5 cut(s)	183, 231, 300, 402, 437
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	7 cut(s)	169, 175, 277, 283, 388, 394, 496
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	25, 212
BfoI	RGCGCY	2 cut(s)	54, 60
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	60, 72, 199, 466
BlpI	GCTNAGC	2 cut(s)	63, 117
BlsI	GCNGC	4 cut(s)	61, 73, 200, 467
Bme1390I	CCNGG	3 cut(s)	25, 203, 212
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	205, 234
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	25, 203, 212
BmsI	GCATC	2 cut(s)	69, 463
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	2 cut(s)	31, 143
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu1102I	GCTNAGC	2 cut(s)	63, 117
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	25, 212
BsaHI	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
BsaJI	CCNNGG	3 cut(s)	202, 324, 390
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	2 cut(s)	53, 67
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	202, 324, 390
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	3 cut(s)	77, 108, 404
BseRI	GAGGAG	3 cut(s)	410, 430, 518
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	4 cut(s)	103, 188, 392, 535
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	5 cut(s)	183, 231, 300, 402, 437
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	6 cut(s)	25, 54, 68, 212, 232, 451
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	5 cut(s)	183, 231, 300, 402, 437
Bsp143I	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
Bsp1720I	GCTNAGC	2 cut(s)	63, 117
BspACI	CCGC	8 cut(s)	60, 71, 74, 103, 321, 390, 392, 465
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	76, 109, 405
BspFNI	CGCG	4 cut(s)	103, 188, 392, 535
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	235, 320
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	53, 67
BssAI	RCCGGY	2 cut(s)	53, 67
BssECI	CCNNGG	3 cut(s)	202, 324, 390
BssMI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
BssNI	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	90, 488
Bst6I	CTCTTC	2 cut(s)	23, 407
BstACI	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
BstC8I	GCNNGC	3 cut(s)	55, 69, 105
BstDEI	CTNAG	3 cut(s)	63, 117, 413
BstDSI	CCRYGG	1 cut(s)	390
BstFNI	CGCG	4 cut(s)	103, 188, 392, 535
BstH2I	RGCGCY	2 cut(s)	54, 60
BstHHI	GCGC	4 cut(s)	53, 59, 109, 188
BstKTI	GATC	9 cut(s)	114, 168, 192, 243, 315, 387, 441, 462, 495
BstMBI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 113, 204, 432, 441
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	23, 201, 210
BstUI	CGCG	4 cut(s)	103, 188, 392, 535
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	55, 69, 105
CfoI	GCGC	4 cut(s)	53, 59, 109, 188
Cfr10I	RCCGGY	2 cut(s)	53, 67
Cfr13I	GGNCC	2 cut(s)	205, 234
Cfr42I	CCGCGG	1 cut(s)	393
CseI	GACGC	3 cut(s)	263, 356, 457
CviAII	CATG	2 cut(s)	193, 238
DdeI	CTNAG	3 cut(s)	63, 117, 413
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	9 cut(s)	113, 167, 191, 242, 314, 386, 440, 461, 494
DpnII	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
DraI	TTTAAA	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	23, 407
EarI	CTCTTC	2 cut(s)	23, 407
EciI	GGCGGA	1 cut(s)	310
Ecl136II	GAGCTC	4 cut(s)	181, 229, 298, 400
Eco24I	GRGCYC	4 cut(s)	183, 231, 300, 402
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	4 cut(s)	181, 229, 298, 400
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	4 cut(s)	181, 229, 298, 400
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	4 cut(s)	183, 231, 300, 402
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	2 cut(s)	196, 241
FaiI	YATR	4 cut(s)	194, 239, 491, 540
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	2 cut(s)	192, 237
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	2 cut(s)	252, 360
Fnu4HI	GCNGC	4 cut(s)	60, 72, 199, 466
FriOI	GRGCYC	4 cut(s)	183, 231, 300, 402
Fsp4HI	GCNGC	4 cut(s)	60, 72, 199, 466
GlaI	GCGC	4 cut(s)	52, 58, 108, 187
GluI	GCNGC	4 cut(s)	60, 72, 199, 466
GsuI	CTGGAG	2 cut(s)	31, 143
HaeII	RGCGCY	2 cut(s)	54, 60
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	6 cut(s)	25, 54, 68, 212, 232, 451
HgaI	GACGC	3 cut(s)	263, 356, 457
HhaI	GCGC	4 cut(s)	53, 59, 109, 188
Hin1I	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
Hin1II	CATG	2 cut(s)	196, 241
Hin6I	GCGC	4 cut(s)	51, 57, 107, 186
HinP1I	GCGC	4 cut(s)	51, 57, 107, 186
HincII	GTYRAC	2 cut(s)	151, 253
HindII	GTYRAC	2 cut(s)	151, 253
HinfI	GANTC	2 cut(s)	317, 337
HpaII	CCGG	6 cut(s)	25, 54, 68, 212, 232, 451
HphI	GGTGA	2 cut(s)	78, 88
Hpy166II	GTNNAC	4 cut(s)	86, 151, 253, 361
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	4 cut(s)	86, 151, 253, 361
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	90, 488
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 113, 204, 432, 441
HpyF3I	CTNAG	3 cut(s)	63, 117, 413
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	5 cut(s)	57, 147, 255, 348, 468
Hsp92II	CATG	2 cut(s)	196, 241
HspAI	GCGC	4 cut(s)	51, 57, 107, 186
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	2 cut(s)	53, 67
KroNI	GCCGGC	2 cut(s)	55, 69
Ksp22I	TGATCA	1 cut(s)	492
KspI	CCGCGG	1 cut(s)	393
Kzo9I	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	6 cut(s)	124, 178, 234, 295, 397, 417
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	2 cut(s)	69, 463
MaeII	ACGT	1 cut(s)	147
MalI	GATC	9 cut(s)	113, 167, 191, 242, 314, 386, 440, 461, 494
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
MboII	GAAGA	5 cut(s)	10, 40, 43, 124, 394
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	5 cut(s)	183, 231, 300, 402, 437
MluCI	AATT	3 cut(s)	140, 496, 577
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	156
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	53, 67
MseI	TTAA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	6 cut(s)	25, 54, 68, 212, 232, 451
MspR9I	CCNGG	3 cut(s)	25, 203, 212
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	4 cut(s)	103, 188, 392, 535
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 113, 204, 432, 441
NaeI	GCCGGC	2 cut(s)	55, 69
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	25, 212
NdeII	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
NgoMIV	GCCGGC	2 cut(s)	53, 67
NlaIII	CATG	2 cut(s)	196, 241
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	2 cut(s)	162, 349
PaeR7I	CTCGAG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	6 cut(s)	153, 261, 273, 321, 354, 468
PdiI	GCCGGC	2 cut(s)	55, 69
PfeI	GAWTC	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	61, 73, 200, 467
Ple19I	CGATCG	1 cut(s)	441
PleI	GAGTC	1 cut(s)	311
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	311
Psp124BI	GAGCTC	4 cut(s)	183, 231, 300, 402
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	205, 234
PspXI	VCTCGAGB	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	165
PvuI	CGATCG	1 cut(s)	441
SacI	GAGCTC	4 cut(s)	183, 231, 300, 402
SacII	CCGCGG	1 cut(s)	393
SalI	GTCGAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	60, 72, 199, 466
Sau3AI	GATC	9 cut(s)	111, 165, 189, 240, 312, 384, 438, 459, 492
Sau96I	GGNCC	2 cut(s)	205, 234
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	25, 203, 212
SduI	GDGCHC	5 cut(s)	183, 231, 300, 402, 437
SfaNI	GCATC	2 cut(s)	69, 463
SfoI	GGCGCC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	245, 341
SmoI	CTYRAG	2 cut(s)	245, 341
Sse9I	AATT	3 cut(s)	140, 496, 577
SsiI	CCGC	8 cut(s)	60, 71, 74, 103, 321, 390, 392, 465
SspDI	GGCGCC	1 cut(s)	56
SstI	GAGCTC	4 cut(s)	183, 231, 300, 402
StyD4I	CCNGG	3 cut(s)	23, 201, 210
TaaI	ACNGT	2 cut(s)	90, 488
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	140, 496, 577
TauI	GCSGC	3 cut(s)	62, 74, 468
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	2 cut(s)	233, 346
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	2 cut(s)	252, 360
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.