Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003291

Physical Location & Seq

Genomic Coordinates Forward (+)

22368545 .. 22368984

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGTTTCAAATCCCTCTTCTCCCGAAATAAGAAGTCCACTCCCTCCTCCCCCACCGTCGTCGCCTCTGACGCCGCCACACCCTTGATCTCACCGTCGGAGCTCGGCGCGATCATAGGAAGCCTCATTCACCCGGTGACGGAGGACGAGCTCCGGTCGATGATCTTGGAGGTGTACGCCGACGGCAACGGGTTCATCGACATCAACGAGGTCGTGGAGCTCAACACCAAAGGGATCAACTCGGTGGAGGCGATACAGAATCTGAAGGACGCCTTCTCCGTCTACGACATTGACGGCAACGGCTCGATCTCGGCGGCGGAGCTTTCCGCAGTGCCTTCGCATTCACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

117

Amino Acids

12.18

Weight (kDa)

4.46

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24620
fragaria_vesca	FvH4_3g17660 FvH4_3g19960 FvH4_3g29250 FvH4_4g33650 FvH4_5g39020
malus_domestica	MD12G1080300.v1.1 MD13G1020800.v1.1 MD15G1357800.v1.1 MD16G1019200.v1.1
prunus_persica	Prupe.1G505300_v2.0.a1 Prupe.8G060000_v2.0.a1
pyrus_communis	pycom16g01720
rosa_chinensis	RchiOBHm_Chr4g0443111 RchiOBHm_Chr7g0240981
rosa_laevigata	RLG00000000607 RLG00000022992
rosa_multiflora	Rmu_co8148428.1_g000001 Rmu_co8155060.1_g000001 Rmu_sc0000677.1_g000036 Rmu_sc0003187.1_g000018 Rmu_sc0004091.1_g000001 Rmu_sc0007968.1_g000014 Rmu_sc0008069.1_g000001 Rmu_sc0042435.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219340 Rroxscaffold_5G00336800
rosa_rugosa	Rorug04G0344500 Rorug07G0341200
rosa_samantha	Rh4BG410400 Rh4DG405400 Rh5DG466500 Rh7AG496000
rosa_wichuraiana	Rw4G034380 Rw5G040770 Rw7G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	110
AciI	CCGC	4 cut(s)	75, 314, 317, 327
AclWI	GGATC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	2 cut(s)	72, 270
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	4 cut(s)	103, 151, 220, 322
AluI	AGCT	4 cut(s)	103, 151, 220, 322
Alw21I	GWGCWC	3 cut(s)	105, 153, 222
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	84, 122, 148, 336
BanII	GRGCYC	3 cut(s)	105, 153, 222
Bbv12I	GWGCWC	3 cut(s)	105, 153, 222
BceAI	ACGGC	3 cut(s)	199, 310, 316
BcgI	CGANNNNNNTGC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	75, 315
BlsI	GCNGC	2 cut(s)	76, 316
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	72, 270
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	3 cut(s)	105, 153, 222
BsiSI	CCGG	2 cut(s)	134, 154
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	340
Bsp1286I	GDGCHC	3 cut(s)	105, 153, 222
Bsp143I	GATC	5 cut(s)	87, 111, 162, 234, 306
BspACI	CCGC	4 cut(s)	75, 314, 317, 327
BspFNI	CGCG	1 cut(s)	110
BspPI	GGATC	1 cut(s)	242
BssMI	GATC	5 cut(s)	87, 111, 162, 234, 306
BssNI	GRCGYC	2 cut(s)	72, 270
Bst4CI	ACNGT	3 cut(s)	58, 96, 348
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	2 cut(s)	72, 270
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	90, 114, 165, 237, 309
BstMBI	GATC	5 cut(s)	87, 111, 162, 234, 306
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	110
CseI	GACGC	2 cut(s)	80, 278
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	6 cut(s)	103, 123, 151, 220, 303, 322
CviKI_1	RGCY	6 cut(s)	103, 123, 151, 220, 303, 322
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	5 cut(s)	89, 113, 164, 236, 308
DpnII	GATC	5 cut(s)	87, 111, 162, 234, 306
DraIII	CACNNNGTG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	3 cut(s)	103, 151, 220
Eco24I	GRGCYC	3 cut(s)	105, 153, 222
Eco53kI	GAGCTC	3 cut(s)	103, 151, 220
Eco57I	CTGAAG	1 cut(s)	284
EcoICRI	GAGCTC	3 cut(s)	103, 151, 220
EcoT38I	GRGCYC	3 cut(s)	105, 153, 222
FaiI	YATR	1 cut(s)	116
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	75, 315
FriOI	GRGCYC	3 cut(s)	105, 153, 222
Fsp4HI	GCNGC	2 cut(s)	75, 315
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	75, 315
HapII	CCGG	2 cut(s)	134, 154
HgaI	GACGC	2 cut(s)	80, 278
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	72, 270
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	134, 154
HphI	GGTGA	4 cut(s)	84, 122, 148, 336
Hpy166II	GTNNAC	3 cut(s)	39, 175, 283
Hpy188I	TCNGA	3 cut(s)	70, 100, 264
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	3 cut(s)	39, 175, 283
Hpy99I	CGWCG	4 cut(s)	62, 65, 100, 185
HpyAV	CCTTC	3 cut(s)	259, 283, 345
HpyCH4III	ACNGT	3 cut(s)	58, 96, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	72, 270
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	87, 111, 162, 234, 306
LmnI	GCTCC	4 cut(s)	100, 156, 217, 319
LpnPI	CCDG	2 cut(s)	147, 167
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	5 cut(s)	89, 113, 164, 236, 308
MboI	GATC	5 cut(s)	87, 111, 162, 234, 306
MboII	GAAGA	1 cut(s)	10
MhlI	GDGCHC	3 cut(s)	105, 153, 222
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	26, 55, 58, 76, 134, 136, 163, 202, 241
MspI	CCGG	2 cut(s)	134, 154
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	340
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	5 cut(s)	87, 111, 162, 234, 306
NmeAIII	GCCGAG	2 cut(s)	84, 290
NmuCI	GTSAC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	5 cut(s)	195, 204, 248, 276, 344
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	76, 316
Psp124BI	GAGCTC	3 cut(s)	105, 153, 222
PstNI	CAGNNNCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	3 cut(s)	105, 153, 222
SatI	GCNGC	2 cut(s)	75, 315
Sau3AI	GATC	5 cut(s)	87, 111, 162, 234, 306
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	3 cut(s)	105, 153, 222
SetI	ASST	6 cut(s)	105, 153, 174, 213, 222, 324
SsiI	CCGC	4 cut(s)	75, 314, 317, 327
SstI	GAGCTC	3 cut(s)	105, 153, 222
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	58, 96, 348
TaqI	TCGA	3 cut(s)	158, 198, 305
TauI	GCSGC	2 cut(s)	77, 317
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	155, 268
TspRI	CASTG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.