MD03G1292800.v1.1

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016629
Physical Location & Seq
Forward (+)
36969531 .. 36972609
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1292800.v1.1.491

Sequence Viewer

Length: 942 bp
ATGGCGCAGACCTCCGTTTCCACCTCCGCCTCTGCCTCCGCTCTCAGATTCAACTCCCTCGTCTTCGCCCCAAACCCTAGCTCTTCTCCCCAACCGCAGACCCTTTCTCTCCCCTTCCACCGCTTTGCTTCAAGGAATTTGAAAAATTTAGTTGGGAGCAGCAAAAGGAGTTCTCCAGTGAAAGCTATCTACTCTGGTGAATTTTGGACACCGGCGGAAAGGAATTCCCGTCAAGGAATTTGGTCCATAAGGGAGGATGTCCAAGTTCCATCTTCGCCATACTTCCCTGCATATGCACAGGGGCAGGGCCCACCCCCCATGGTGCAAGAACGCTTTCAAAGCGTTATTAGTCAGCTTTTCCAATATAGAATAATACGTTGTGGGGGAGCTGTTGATGATGATATGGCAAACATAATTGTTGCTCAACTTCTTTACCTTGATGCTGTTGATCCTCAGAAGGATATTGTCATGTATGTAAATTCACCAGGAGGATCTGTTACTGCTGGTATGGCCATTTTTGACACAATGAGGCATATCCGACCTGATGTCTCCACCGTTTGCGTTGGACTTGCTGCTAGTATGGGAGCTTTCCTGCTTAGCGCTGGTACCAAGGGAAAAAGATACAGCTTGCCAAATTCGAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGTGGGCAAACTGACATCGATATTCAGGCAAATGAGATGCTACACCATAAGGCAAACTTGAATGGCTATCTCTCGTACCACACTGGTCAAAGTCTTGAAAAGATCAACCAAGACACAGATCGCGATTTCTTCATGAGTGCGAAGGAAGCCGAAGAATACGGGCTTATAGATGGTGTTATATCGAATCCTCTCAAAGCTTTCCAACCTTTGGCAGCCGCAACAGCGAGTGGAGATGAACCTGCTGAGCAGACTGTTGCGGAGAGTTAA

Protein Analysis

314

Amino Acids

33.86

Weight (kDa)

6.07

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 109 - 287 2e-80 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016629)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02560
fragaria_vesca FvH4_5g39050
malus_domestica MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica Prupe.8G265800_v2.0.a1
pyrus_communis pycom03g23210 pycom11g27350
rosa_chinensis RchiOBHm_Chr7g0241011
rosa_laevigata RLG00000000604
rosa_multiflora Rmu_sc0003187.1_g000009
rosa_roxburghii Rroxscaffold_3G00219320
rosa_rugosa Rorug07G0341200
rosa_samantha Rh7BG467700
rosa_wichuraiana Rw7G041930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 922
Acc65I GGTACC 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 883
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 798
AciI CCGC 7 cut(s) 27, 39, 95, 121, 215, 891, 932
AclWI GGATC 3 cut(s) 443, 499, 643
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 7 cut(s) 136, 145, 200, 223, 237, 478, 634
AfaI GTAC 2 cut(s) 607, 752
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 665, 883
AgsI TTSAA 6 cut(s) 52, 132, 142, 338, 736, 773
AhdI GACNNNNNGTC 1 cut(s) 545
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 8 cut(s) 81, 185, 355, 389, 587, 627, 671, 872
AluI AGCT 8 cut(s) 81, 185, 355, 389, 587, 627, 671, 872
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 3 cut(s) 443, 499, 643
Aor51HI AGCGCT 1 cut(s) 601
AoxI GGCC 2 cut(s) 307, 510
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 159, 572, 887
ApoI RAATTY 7 cut(s) 136, 145, 200, 223, 237, 478, 634
Asp700I GAANNNNTTC 1 cut(s) 333
Asp718I GGTACC 1 cut(s) 605
AspLEI GCGC 2 cut(s) 7, 602
AspS9I GGNCC 3 cut(s) 243, 307, 308
AsuHPI GGTGA 2 cut(s) 209, 474
AvaII GGWCC 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 512
BanI GGYRCC 1 cut(s) 605
BanII GRGCYC 2 cut(s) 311, 673
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 3 cut(s) 171, 559, 899
BccI CCATC 3 cut(s) 277, 660, 839
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 2 cut(s) 78, 576
BfoI RGCGCY 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 4 cut(s) 160, 573, 888, 891
BlpI GCTNAGC 2 cut(s) 596, 918
BlsI GCNGC 4 cut(s) 161, 574, 889, 892
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 545
BmgT120I GGNCC 3 cut(s) 243, 307, 308
BmiI GGNNCC 2 cut(s) 309, 607
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 430, 702
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 2 cut(s) 596, 918
BpuEI CTTGAG 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 318, 609
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 883
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 176, 763
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 318, 609
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 2 cut(s) 665, 883
BseMII CTCAG 3 cut(s) 58, 467, 909
BseNI ACTGG 2 cut(s) 176, 763
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 3 cut(s) 171, 559, 899
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 2 cut(s) 309, 512
BshNI GGYRCC 1 cut(s) 605
BshVI ATCGAT 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 665, 883
BsmAI GTCTC 1 cut(s) 553
BsnI GGCC 2 cut(s) 309, 512
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 311, 673
Bsp143I GATC 5 cut(s) 448, 491, 648, 777, 793
Bsp1720I GCTNAGC 2 cut(s) 596, 918
Bsp19I CCATGG 1 cut(s) 318
Bsp68I TCGCGA 1 cut(s) 798
BspACI CCGC 7 cut(s) 27, 39, 95, 121, 215, 891, 932
BspANI GGCC 2 cut(s) 309, 512
BspCNI CTCAG 3 cut(s) 57, 466, 910
BspDI ATCGAT 1 cut(s) 693
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 309, 607
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 3 cut(s) 443, 499, 643
BspQI GCTCTTC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 2 cut(s) 176, 763
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 318, 609
BssMI GATC 5 cut(s) 448, 491, 648, 777, 793
BssT1I CCWWGG 2 cut(s) 318, 609
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 556, 928
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 4 cut(s) 44, 453, 596, 918
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 2 cut(s) 7, 602
BstKTI GATC 5 cut(s) 451, 494, 651, 780, 796
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 5 cut(s) 448, 491, 648, 777, 793
BstMWI GCNNNNNNNGC 4 cut(s) 339, 509, 821, 896
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 171, 559, 899
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 2 cut(s) 309, 512
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 183, 756
BtuMI TCGCGA 1 cut(s) 798
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 629
CciI TCATGA 1 cut(s) 807
CfoI GCGC 2 cut(s) 7, 602
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 243, 307, 308
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 2 cut(s) 606, 751
CviAII CATG 3 cut(s) 319, 469, 808
CviQI GTAC 2 cut(s) 606, 751
DdeI CTNAG 4 cut(s) 44, 453, 596, 918
DpnI GATC 5 cut(s) 450, 493, 650, 779, 795
DpnII GATC 5 cut(s) 448, 491, 648, 777, 793
DriI GACNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 88
Eam1105I GACNNNNNGTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 2 cut(s) 16, 230
Ecl136II GAGCTC 1 cut(s) 671
Eco130I CCWWGG 2 cut(s) 318, 609
Eco24I GRGCYC 2 cut(s) 311, 673
Eco47I GGWCC 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 601
Eco53kI GAGCTC 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 318, 609
EcoT38I GRGCYC 2 cut(s) 311, 673
ErhI CCWWGG 2 cut(s) 318, 609
FaeI CATG 3 cut(s) 322, 472, 811
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FatI CATG 3 cut(s) 318, 468, 807
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 160, 573, 888, 891
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 2 cut(s) 311, 673
Fsp4HI GCNGC 4 cut(s) 160, 573, 888, 891
FspBI CTAG 2 cut(s) 78, 576
GlaI GCGC 2 cut(s) 6, 601
GluI GCNGC 4 cut(s) 160, 573, 888, 891
GsuI CTGGAG 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 2 cut(s) 309, 512
HapII CCGG 1 cut(s) 212
HhaI GCGC 2 cut(s) 7, 602
Hin1II CATG 3 cut(s) 322, 472, 811
Hin6I GCGC 2 cut(s) 5, 600
HinP1I GCGC 2 cut(s) 5, 600
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 2 cut(s) 48, 859
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 209, 474
Hpy188I TCNGA 3 cut(s) 47, 456, 539
Hpy188III TCNNGA 3 cut(s) 770, 797, 808
HpyAV CCTTC 3 cut(s) 124, 451, 811
HpyCH4III ACNGT 2 cut(s) 556, 928
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 290, 296, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 339, 509, 821, 896
HpyF3I CTNAG 4 cut(s) 44, 453, 596, 918
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 3 cut(s) 322, 472, 811
HspAI GCGC 2 cut(s) 5, 600
KpnI GGTACC 1 cut(s) 609
Kzo9I GATC 5 cut(s) 448, 491, 648, 777, 793
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 156, 386, 584, 668
Lsp1109I GCAGC 3 cut(s) 171, 559, 899
LweI GCATC 2 cut(s) 430, 702
MaeI CTAG 2 cut(s) 78, 576
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 496
MalI GATC 5 cut(s) 450, 493, 650, 779, 795
MbiI CCGCTC 1 cut(s) 41
MboI GATC 5 cut(s) 448, 491, 648, 777, 793
MboII GAAGA 5 cut(s) 55, 75, 264, 796, 839
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 2 cut(s) 311, 673
MlsI TGGCCA 1 cut(s) 512
MluCI AATT 8 cut(s) 136, 145, 200, 223, 237, 414, 478, 634
MluNI TGGCCA 1 cut(s) 512
MmeI TCCRAC 3 cut(s) 544, 562, 901
Mox20I TGGCCA 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 512
MseI TTAA 1 cut(s) 940
Msp20I TGGCCA 1 cut(s) 512
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 4 cut(s) 339, 509, 821, 896
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 292
NdeII GATC 5 cut(s) 448, 491, 648, 777, 793
NlaIII CATG 3 cut(s) 322, 472, 811
NlaIV GGNNCC 2 cut(s) 309, 607
NruI TCGCGA 1 cut(s) 798
PagI TCATGA 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 48, 859
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 4 cut(s) 161, 574, 889, 892
Psp124BI GAGCTC 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 309, 607
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 3 cut(s) 243, 307, 308
PsuI RGATCY 1 cut(s) 491
RruI TCGCGA 1 cut(s) 798
RsaI GTAC 2 cut(s) 607, 752
RsaNI GTAC 2 cut(s) 606, 751
SacI GAGCTC 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 940
SatI GCNGC 4 cut(s) 160, 573, 888, 891
Sau3AI GATC 5 cut(s) 448, 491, 648, 777, 793
Sau96I GGNCC 3 cut(s) 243, 307, 308
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 2 cut(s) 311, 673
SfaNI GCATC 2 cut(s) 430, 702
SgrAI CRCCGGYG 1 cut(s) 211
SinI GGWCC 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 8 cut(s) 136, 145, 200, 223, 237, 414, 478, 634
SsiI CCGC 7 cut(s) 27, 39, 95, 121, 215, 891, 932
SspMI CTAG 2 cut(s) 78, 576
SstI GAGCTC 1 cut(s) 673
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 2 cut(s) 318, 609
TaaI ACNGT 2 cut(s) 556, 928
TaiI ACGT 1 cut(s) 379
TaqI TCGA 3 cut(s) 638, 693, 857
TasI AATT 8 cut(s) 136, 145, 200, 223, 237, 414, 478, 634
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 2 cut(s) 48, 859
Tru1I TTAA 1 cut(s) 940
Tru9I TTAA 1 cut(s) 940
TscAI CASTG 2 cut(s) 183, 763
TseI GCWGC 3 cut(s) 159, 572, 887
TspDTI ATGAA 2 cut(s) 796, 924
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 2 cut(s) 183, 763
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 7 cut(s) 136, 145, 200, 223, 237, 478, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 78, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.