Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016629

Physical Location & Seq

Genomic Coordinates Forward (+)

29631727 .. 29634625

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27350.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGCAGACCTGTGTTTCCACCTCCGCCTCTGCTCTCAGATTCAACTCCCTCGTCCTCGCTCCAAACCCTAGCTCTTCTCCCCAACCGAAGGCCCTCTCTCTCCCCTTCCAACGCCTTCCTTCAAGGATGTTTAAAAATTTAGTTTGGAGCAGCAAAAAGAGTTCTCCAGTGAAAGCTATCTACTCTGGTGAATTTTGGACACCGGCGGAAAAGAATTCTCGTCAAGGAATTTGGTCCATAAGGGAGGATGTGCAAGTTCCATCTTCACCATACTTCCCTGCGTATGCACAGGGACAGGGGCCACCCCCCATGGTGCAAGAACGCTTTCAAAGTGTTATTAGTCAGCTTTTCCAATATAGAATAATACGTTGTGGGGGAGCAGTTGATGATGATATGGCAAACATAATTGTTGCTCAACTTCTTTACCTTGATGCTGTTGATCCTCAGAAGGATATTGTGATGTATGTAAATTCACCAGGAGGATCTGTTACTGCTGGTATGGCCGTTTTTGACACAATGAGGCATATCCGACCTGACGTCTCCACAGTATGTGTTGGACTTGCTGCTAGTATGGGAGCTTTCCTGCTTAGCGCCGGTACCAAAGGAAAAAGGTACAGCTTGCCAAATTCGAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGTGGGCAAACCGACATCGATATTCAGGCAAATGAGATGCTACATCATAAGGCAAACTTGAATGGTTATCTCGCCTACCACACTGGTCAAAGTCTTGAAAAGATCAACCAAGACATGGATCGCGATTTCTCCATGAGTGCGAAGGAAGCCCAAGAATACGGGCTTATAGATGGCGTTATATCGAATCCACTCAAAGCTTTCCAACCTTTGGCAGCCCCAACTGCGATTGAAGATGAATCTGCTGAGCAGACGGTTATAGACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

312

Amino Acids

33.85

Weight (kDa)

6.21

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02560
fragaria_vesca	FvH4_5g39050
malus_domestica	MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica	Prupe.8G265800_v2.0.a1
pyrus_communis	pycom03g23210 pycom11g27350
rosa_chinensis	RchiOBHm_Chr7g0241011
rosa_laevigata	RLG00000000604
rosa_multiflora	Rmu_sc0003187.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219320
rosa_rugosa	Rorug07G0341200
rosa_samantha	Rh7BG467700
rosa_wichuraiana	Rw7G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	599
AccB7I	CCANNNNNTGG	2 cut(s)	784, 877
AccII	CGCG	1 cut(s)	792
AciI	CCGC	2 cut(s)	27, 209
AclWI	GGATC	4 cut(s)	437, 493, 637, 795
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	6 cut(s)	139, 194, 217, 231, 472, 628
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	2 cut(s)	601, 617
AfiI	CCNNNNNNNGG	4 cut(s)	91, 659, 784, 877
AgsI	TTSAA	6 cut(s)	46, 126, 332, 730, 767, 899
AhdI	GACNNNNNGTC	1 cut(s)	539
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	7 cut(s)	75, 179, 349, 581, 621, 665, 866
AluI	AGCT	7 cut(s)	75, 179, 349, 581, 621, 665, 866
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	4 cut(s)	437, 493, 637, 795
AoxI	GGCC	3 cut(s)	93, 302, 504
ApeKI	GCWGC	3 cut(s)	153, 566, 881
ApoI	RAATTY	6 cut(s)	139, 194, 217, 231, 472, 628
Asp700I	GAANNNNTTC	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	7, 596
AspS9I	GGNCC	3 cut(s)	94, 237, 302
AsuHPI	GGTGA	3 cut(s)	203, 261, 468
AvaII	GGWCC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	165, 553, 893
BccI	CCATC	3 cut(s)	271, 654, 833
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	72, 570
BfoI	RGCGCY	1 cut(s)	597
BisI	GCNGC	3 cut(s)	154, 567, 882
BlpI	GCTNAGC	2 cut(s)	590, 912
BlsI	GCNGC	3 cut(s)	155, 568, 883
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	237
BmeRI	GACNNNNNGTC	1 cut(s)	539
BmgT120I	GGNCC	3 cut(s)	94, 237, 302
BmiI	GGNNCC	2 cut(s)	303, 601
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	424, 696
BpmI	CTGGAG	1 cut(s)	153
Bpu1102I	GCTNAGC	2 cut(s)	590, 912
BpuEI	CTTGAG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	641
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 659, 784, 877
Bse118I	RCCGGY	2 cut(s)	205, 596
Bse1I	ACTGG	2 cut(s)	170, 757
Bse8I	GATNNNNATC	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	135, 256
BseJI	GATNNNNATC	1 cut(s)	641
BseLI	CCNNNNNNNGG	4 cut(s)	91, 659, 784, 877
BseMII	CTCAG	3 cut(s)	52, 461, 903
BseNI	ACTGG	2 cut(s)	170, 757
BseXI	GCAGC	3 cut(s)	165, 553, 893
Bsh1236I	CGCG	1 cut(s)	792
BshFI	GGCC	3 cut(s)	95, 304, 506
BshNI	GGYRCC	1 cut(s)	599
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	206, 597
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	4 cut(s)	91, 659, 784, 877
BsmAI	GTCTC	1 cut(s)	547
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	95, 304, 506
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	5 cut(s)	442, 485, 642, 771, 787
Bsp1720I	GCTNAGC	2 cut(s)	590, 912
Bsp19I	CCATGG	1 cut(s)	312
Bsp68I	TCGCGA	1 cut(s)	792
BspACI	CCGC	2 cut(s)	27, 209
BspANI	GGCC	3 cut(s)	95, 304, 506
BspCNI	CTCAG	3 cut(s)	51, 460, 904
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	303, 601
BspPI	GGATC	4 cut(s)	437, 493, 637, 795
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	599
BsrFI	RCCGGY	2 cut(s)	205, 596
BsrI	ACTGG	2 cut(s)	170, 757
BssAI	RCCGGY	2 cut(s)	205, 596
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	442, 485, 642, 771, 787
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	550, 922, 932
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	4 cut(s)	38, 447, 590, 912
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	135, 256
BstFNI	CGCG	1 cut(s)	792
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	2 cut(s)	7, 596
BstKTI	GATC	5 cut(s)	445, 488, 645, 774, 790
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	5 cut(s)	442, 485, 642, 771, 787
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 815, 890
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstUI	CGCG	1 cut(s)	792
BstV1I	GCAGC	3 cut(s)	165, 553, 893
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	95, 304, 506
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	135, 256
BtsIMutI	CAGTG	2 cut(s)	177, 750
BtuMI	TCGCGA	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	623
CfoI	GCGC	2 cut(s)	7, 596
Cfr10I	RCCGGY	2 cut(s)	205, 596
Cfr13I	GGNCC	3 cut(s)	94, 237, 302
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	600, 616
CviAII	CATG	3 cut(s)	313, 784, 802
CviQI	GTAC	2 cut(s)	600, 616
DdeI	CTNAG	4 cut(s)	38, 447, 590, 912
DpnI	GATC	5 cut(s)	444, 487, 644, 773, 789
DpnII	GATC	5 cut(s)	442, 485, 642, 771, 787
DraI	TTTAAA	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	539
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	2 cut(s)	16, 224
Ecl136II	GAGCTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	3 cut(s)	316, 787, 805
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	312, 783, 801
Fnu4HI	GCNGC	3 cut(s)	154, 567, 882
FokI	GGATG	2 cut(s)	142, 263
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	3 cut(s)	154, 567, 882
FspBI	CTAG	2 cut(s)	72, 570
GlaI	GCGC	2 cut(s)	6, 595
GluI	GCNGC	3 cut(s)	154, 567, 882
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	95, 304, 506
HapII	CCGG	2 cut(s)	206, 597
HhaI	GCGC	2 cut(s)	7, 596
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	3 cut(s)	316, 787, 805
Hin6I	GCGC	2 cut(s)	5, 594
HinP1I	GCGC	2 cut(s)	5, 594
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	3 cut(s)	42, 853, 905
HpaII	CCGG	2 cut(s)	206, 597
HphI	GGTGA	3 cut(s)	203, 261, 468
Hpy188I	TCNGA	3 cut(s)	41, 450, 533
Hpy188III	TCNNGA	2 cut(s)	764, 791
HpyAV	CCTTC	6 cut(s)	85, 118, 128, 132, 445, 805
HpyCH4III	ACNGT	3 cut(s)	550, 922, 932
HpyCH4IV	ACGT	2 cut(s)	370, 540
HpyCH4V	TGCA	3 cut(s)	256, 290, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 815, 890
HpyF3I	CTNAG	4 cut(s)	38, 447, 590, 912
HpySE526I	ACGT	2 cut(s)	370, 540
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	316, 787, 805
HspAI	GCGC	2 cut(s)	5, 594
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	442, 485, 642, 771, 787
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	5 cut(s)	67, 150, 380, 578, 662
Lsp1109I	GCAGC	3 cut(s)	165, 553, 893
LweI	GCATC	2 cut(s)	424, 696
MaeI	CTAG	2 cut(s)	72, 570
MaeII	ACGT	2 cut(s)	370, 540
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	5 cut(s)	444, 487, 644, 773, 789
MboI	GATC	5 cut(s)	442, 485, 642, 771, 787
MboII	GAAGA	3 cut(s)	69, 258, 911
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	7 cut(s)	139, 194, 217, 231, 408, 472, 628
MmeI	TCCRAC	4 cut(s)	136, 538, 556, 895
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	135
MspI	CCGG	2 cut(s)	206, 597
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	503, 815, 890
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	5 cut(s)	442, 485, 642, 771, 787
NlaIII	CATG	3 cut(s)	316, 787, 805
NlaIV	GGNNCC	2 cut(s)	303, 601
NruI	TCGCGA	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	42, 853, 905
PflMI	CCANNNNNTGG	2 cut(s)	784, 877
PkrI	GCNGC	3 cut(s)	155, 568, 883
Psp124BI	GAGCTC	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	303, 601
PspPI	GGNCC	3 cut(s)	94, 237, 302
PsuI	RGATCY	1 cut(s)	485
RruI	TCGCGA	1 cut(s)	792
RsaI	GTAC	2 cut(s)	601, 617
RsaNI	GTAC	2 cut(s)	600, 616
SacI	GAGCTC	1 cut(s)	667
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	154, 567, 882
Sau3AI	GATC	5 cut(s)	442, 485, 642, 771, 787
Sau96I	GGNCC	3 cut(s)	94, 237, 302
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	424, 696
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	7 cut(s)	139, 194, 217, 231, 408, 472, 628
SsiI	CCGC	2 cut(s)	27, 209
SspMI	CTAG	2 cut(s)	72, 570
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	550, 922, 932
TaiI	ACGT	2 cut(s)	373, 543
TaqI	TCGA	3 cut(s)	632, 687, 851
TasI	AATT	7 cut(s)	139, 194, 217, 231, 408, 472, 628
TfiI	GAWTC	3 cut(s)	42, 853, 905
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	177, 757
TseI	GCWGC	3 cut(s)	153, 566, 881
TspDTI	ATGAA	1 cut(s)	918
TspRI	CASTG	2 cut(s)	177, 757
Van91I	CCANNNNNTGG	2 cut(s)	784, 877
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	6 cut(s)	139, 194, 217, 231, 472, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	2 cut(s)	72, 570
ZraI	GACGTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.