Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016629

Physical Location & Seq

Genomic Coordinates Forward (+)

22257725 .. 22261379

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGCAGACGTGCGTTTCCACATCGGCCTCGTCTCTCAGATTCAACTCCCTTGGCTTCGTCCCAAACCCTAGCTGTTCTCCCCAACCACAGGCCCTCTCTCTCCCCTTCCAACGCTTACCTTCAAGGAAATTGAATAAGTTAGTTGGGAAGAGCAAAAATCTCCAAAGTTTTCCAGTGAAAGCTATTTACTCTGGTGAACATTGGGCACCAGAAAGGAGTTCTCGTCAAGGAATTTGGTCCATAAGGGAGGATGTGCAAGTTCCATCTTCTCCATACTTTCCAGCATATGCACAGGGACAGGGCCCACCCCCTATGGTGCAAGAACGCTTTCAGAGTGTTATTAGTCAGCTTTTCCAGCATAGAATAATACGTTGTGGGGGAGCTGTTGATGATGATATGGCAAACATAATTGTTGCTCAACTTCTTTACCTTGATGCTGTTGATCCTAAGAAGGACATTGTCATGTATGTAAATTCACCAGGAGGATCTGTTACTGCTGGTATGGCCATTTTCGACACAATGAGGCATATCCGACCTGATGTCTCCACTGTATGTGTTGGGCTTGCAGCTAGCATGGGGGCTTTCCTGCTCAGCGCTGGTACCAAAGGAAAAAGGTACAGCTTGCCAAATTCGAGGATAATGATCCATCAGCCTCTTGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGGCAAATGAGATGCTGCATCATAAGGCAAATTTGAACGGTTATCTCTCCTACCACACTGGTCAAAGTCTTGAAAAGATCAATCAAGACACAGATCGTGATTTCTTCATGAGTGCGAAGGAAGCCAAAGATTATGGGCTTATAGATGGTGTGATATCGAATCCTCTCAAAGCTTTCCAACCTTTGGCAGCCGCAACAGCAAGTGAAGATGAATCAGCTGAGCAAAGTGTTGCGGAAAGTAAAGGTGAATCGAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

319

Amino Acids

34.48

Weight (kDa)

7.05

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02560
fragaria_vesca	FvH4_5g39050
malus_domestica	MD00G1140700.v1.1 MD03G1292800.v1.1
prunus_persica	Prupe.8G265800_v2.0.a1
pyrus_communis	pycom03g23210 pycom11g27350
rosa_chinensis	RchiOBHm_Chr7g0241011
rosa_laevigata	RLG00000000604
rosa_multiflora	Rmu_sc0003187.1_g000009
rosa_roxburghii	Rroxscaffold_3G00219320
rosa_rugosa	Rorug07G0341200
rosa_samantha	Rh7BG467700
rosa_wichuraiana	Rw7G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	208, 602
AccB7I	CCANNNNNTGG	1 cut(s)	880
AciI	CCGC	2 cut(s)	888, 929
AclWI	GGATC	3 cut(s)	440, 496, 640
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	4 cut(s)	234, 475, 631, 727
AfaI	GTAC	2 cut(s)	604, 620
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	3 cut(s)	91, 662, 880
AgsI	TTSAA	5 cut(s)	46, 126, 136, 733, 770
AhdI	GACNNNNNGTC	1 cut(s)	542
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	9 cut(s)	75, 185, 352, 386, 572, 624, 668, 869, 914
AluI	AGCT	9 cut(s)	75, 185, 352, 386, 572, 624, 668, 869, 914
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	39, 550
AlwI	GGATC	3 cut(s)	440, 496, 640
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	4 cut(s)	27, 93, 304, 507
ApaI	GGGCCC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	569, 712, 884
ApoI	RAATTY	4 cut(s)	234, 475, 631, 727
Asp700I	GAANNNNTTC	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	4 cut(s)	94, 240, 304, 305
AsuHPI	GGTGA	3 cut(s)	209, 471, 953
AsuNHI	GCTAGC	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	211, 308
BalI	TGGCCA	1 cut(s)	509
BanI	GGYRCC	2 cut(s)	208, 602
BanII	GRGCYC	2 cut(s)	308, 670
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	581, 699, 896
BccI	CCATC	3 cut(s)	274, 657, 836
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	39, 550
BfaI	CTAG	2 cut(s)	72, 573
BfoI	RGCGCY	1 cut(s)	600
BisI	GCNGC	4 cut(s)	570, 713, 885, 888
BlpI	GCTNAGC	2 cut(s)	593, 915
BlsI	GCNGC	4 cut(s)	571, 714, 886, 889
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	240
BmeRI	GACNNNNNGTC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	4 cut(s)	94, 240, 304, 305
BmiI	GGNNCC	3 cut(s)	210, 306, 604
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	3 cut(s)	427, 699, 724
BmtI	GCTAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	2 cut(s)	593, 915
BpuEI	CTTGAG	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 662, 880
Bse1I	ACTGG	2 cut(s)	176, 760
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	3 cut(s)	91, 662, 880
BseMII	CTCAG	3 cut(s)	52, 607, 906
BseNI	ACTGG	2 cut(s)	176, 760
BseSI	GKGCMC	2 cut(s)	211, 308
BseXI	GCAGC	3 cut(s)	581, 699, 896
BshFI	GGCC	4 cut(s)	29, 95, 306, 509
BshNI	GGYRCC	2 cut(s)	208, 602
BsiHKAI	GWGCWC	1 cut(s)	670
BslFI	GGGAC	2 cut(s)	47, 312
BslI	CCNNNNNNNGG	3 cut(s)	91, 662, 880
BsmAI	GTCTC	2 cut(s)	39, 550
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	47, 312
BsnI	GGCC	4 cut(s)	29, 95, 306, 509
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	3 cut(s)	211, 308, 670
Bsp143I	GATC	5 cut(s)	445, 488, 645, 774, 790
Bsp1720I	GCTNAGC	2 cut(s)	593, 915
BspACI	CCGC	2 cut(s)	888, 929
BspANI	GGCC	4 cut(s)	29, 95, 306, 509
BspCNI	CTCAG	3 cut(s)	51, 606, 907
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	210, 306, 604
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	3 cut(s)	440, 496, 640
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	208, 602
BsrI	ACTGG	2 cut(s)	176, 760
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	5 cut(s)	445, 488, 645, 774, 790
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	553, 737
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	567, 574, 626
BstDEI	CTNAG	4 cut(s)	38, 450, 593, 915
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	5 cut(s)	448, 491, 648, 777, 793
BstMAI	GTCTC	2 cut(s)	39, 550
BstMBI	GATC	5 cut(s)	445, 488, 645, 774, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	358, 506, 818, 893
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSLI	GKGCMC	2 cut(s)	211, 308
BstV1I	GCAGC	3 cut(s)	581, 699, 896
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	29, 95, 306, 509
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	183, 549, 753
Cac8I	GCNNGC	3 cut(s)	567, 574, 626
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	4 cut(s)	94, 240, 304, 305
Csp6I	GTAC	2 cut(s)	603, 619
CviAII	CATG	3 cut(s)	466, 577, 805
CviQI	GTAC	2 cut(s)	603, 619
DdeI	CTNAG	4 cut(s)	38, 450, 593, 915
DpnI	GATC	5 cut(s)	447, 490, 647, 776, 792
DpnII	GATC	5 cut(s)	445, 488, 645, 774, 790
DriI	GACNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	308, 670
Eco32I	GATATC	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	2 cut(s)	94, 304
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	852
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	2 cut(s)	308, 670
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	469, 580, 808
FaqI	GGGAC	2 cut(s)	47, 312
FatI	CATG	3 cut(s)	465, 576, 804
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	570, 713, 885, 888
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	308, 670
Fsp4HI	GCNGC	4 cut(s)	570, 713, 885, 888
FspBI	CTAG	2 cut(s)	72, 573
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	570, 713, 885, 888
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	29, 95, 306, 509
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	3 cut(s)	469, 580, 808
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	4 cut(s)	42, 856, 908, 944
HphI	GGTGA	3 cut(s)	209, 471, 953
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	41, 336, 536, 956
Hpy188III	TCNNGA	4 cut(s)	767, 782, 794, 805
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	118, 132, 448, 808
HpyCH4III	ACNGT	2 cut(s)	553, 737
HpyCH4IV	ACGT	2 cut(s)	11, 373
HpyCH4V	TGCA	5 cut(s)	259, 293, 322, 569, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	358, 506, 818, 893
HpyF3I	CTNAG	4 cut(s)	38, 450, 593, 915
HpySE526I	ACGT	2 cut(s)	11, 373
Hsp92II	CATG	3 cut(s)	469, 580, 808
HspAI	GCGC	1 cut(s)	597
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	445, 488, 645, 774, 790
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	383, 665
Lsp1109I	GCAGC	3 cut(s)	581, 699, 896
LweI	GCATC	3 cut(s)	427, 699, 724
MaeI	CTAG	2 cut(s)	72, 573
MaeII	ACGT	2 cut(s)	11, 373
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	5 cut(s)	447, 490, 647, 776, 792
MboI	GATC	5 cut(s)	445, 488, 645, 774, 790
MboII	GAAGA	4 cut(s)	163, 261, 793, 914
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	3 cut(s)	211, 308, 670
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	6 cut(s)	131, 234, 411, 475, 631, 727
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	136, 559, 898
MnlI	CCTC	8 cut(s)	40, 107, 244, 479, 519, 630, 666, 870
Mox20I	TGGCCA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	914
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	358, 506, 818, 893
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	5 cut(s)	445, 488, 645, 774, 790
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	3 cut(s)	469, 580, 808
NlaIV	GGNNCC	3 cut(s)	210, 306, 604
PagI	TCATGA	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	42, 856, 908, 944
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	880
PkrI	GCNGC	4 cut(s)	571, 714, 886, 889
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	210, 306, 604
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	4 cut(s)	94, 240, 304, 305
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	2 cut(s)	604, 620
RsaNI	GTAC	2 cut(s)	603, 619
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	146
SatI	GCNGC	4 cut(s)	570, 713, 885, 888
Sau3AI	GATC	5 cut(s)	445, 488, 645, 774, 790
Sau96I	GGNCC	4 cut(s)	94, 240, 304, 305
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	3 cut(s)	211, 308, 670
SfaNI	GCATC	3 cut(s)	427, 699, 724
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	6 cut(s)	131, 234, 411, 475, 631, 727
SsiI	CCGC	2 cut(s)	888, 929
SspMI	CTAG	2 cut(s)	72, 573
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	553, 737
TaiI	ACGT	2 cut(s)	14, 376
TaqI	TCGA	4 cut(s)	516, 635, 854, 947
TasI	AATT	6 cut(s)	131, 234, 411, 475, 631, 727
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	4 cut(s)	42, 856, 908, 944
TscAI	CASTG	3 cut(s)	183, 556, 760
TseI	GCWGC	3 cut(s)	569, 712, 884
TspDTI	ATGAA	2 cut(s)	793, 921
TspRI	CASTG	3 cut(s)	183, 556, 760
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	4 cut(s)	234, 475, 631, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	72, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.