AT1G03340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012133
Physical Location & Seq
Forward (+)
819612 .. 821476
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03340.1

Sequence Viewer

Length: 1158 bp
ATGGCTTCTCATAGCTATTCAACACTTAGGTTTAGTCTCCTTCAAGAGCTAAGAAGCAACGAGATCATCAAGACAAGCCGGGCTTATCTGGTGAATCCTGGAGGAAGAAAATATGAGATATTACCGGAGAGCTCCTTTAACCTGAAATCACAACTCTTGGAGCCATTGAAACCTTTTTCTTCTTTTAGTAAGTCTAACCACTTTTTGGAGTTTGATTCAACCATGATGAAGCATAGACTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTTAAGCTTGGGGATCACTCAGCAGTATGCAAGAAAAGAGGAGGTGTTAGAGTTCCTTTTGTCTAGATCAGAAGAAGAACTCAAAGAAGAAGGATTCGATTTGTCTCTCCTATCTGAATTGATGGGTCTAGATGCTTTAAGATCAAGTTCTCAGCAACCATATGCAAAGCCGTTATTGGATCTCATGGTGGATGCTAACATTCTGTTCTCAAGTAGCAGAGCTGAATTGAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGATTAAGGAACTCAACAAGATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGTACCAATAGACACTCTGCAGCTACCCGAGGACGCAGTTACACTAGCTCCTCCAAAGAGTCCGAAGAAAACCAGGCTCAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATAAGGAATATGACCTCTACGAACGAAACCGTCTTCATGCGTGTGAGAGCCTTCTCTCTCTGATGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGTGGAGAACTCTTCGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGCACTGGTATGGCTGTGCTCTTCTTTCTCGTTTGTAATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACCAATTCTTCGAGGGTGCAATGAGTTTGAGTTTGGTATTGCTCTCGTGGTCTGTGAGTAGACTCAGGGAAGCCCTTGTTAATTTCAATAGGAAAACAATCAACGAAGAAGAAGTCTCAAATAAAGTGGAAAGAAGAATCAAAGAAGTTTACTTCAGAGCTGCCACAGTTATTGCCATGGTTGCACTTAGGTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

44.03

Weight (kDa)

9.06

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 931
Acc65I GGTACC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 205
AccI GTMKAC 1 cut(s) 1018
AciI CCGC 1 cut(s) 584
AclWI GGATC 2 cut(s) 296, 462
AcuI CTGAAG 1 cut(s) 1096
AcvI CACGTG 1 cut(s) 842
AfaI GTAC 2 cut(s) 612, 945
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 7 cut(s) 21, 44, 169, 219, 505, 876, 1045
AjnI CCWGG 3 cut(s) 97, 680, 935
Alw21I GWGCWC 2 cut(s) 134, 909
Alw26I GTCTC 4 cut(s) 41, 384, 520, 1078
AlwI GGATC 2 cut(s) 296, 462
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 635
ApeKI GCWGC 3 cut(s) 524, 628, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 1056, 1088
Asp718I GGTACC 1 cut(s) 943
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 103, 687
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 916, 948
BauI CACGAG 1 cut(s) 1003
BbrPI CACGTG 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 2 cut(s) 134, 909
BbvI GCAGC 3 cut(s) 536, 640, 1105
BccI CCATC 2 cut(s) 391, 552
BceAI ACGGC 3 cut(s) 430, 537, 590
BciT130I CCWGG 3 cut(s) 99, 682, 937
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 4 cut(s) 41, 384, 520, 1078
BfaI CTAG 3 cut(s) 339, 404, 653
BfmI CTRYAG 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 931
BisI GCNGC 3 cut(s) 525, 629, 1119
BlsI GCNGC 3 cut(s) 526, 630, 1120
Bme1390I CCNGG 4 cut(s) 80, 99, 682, 937
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 162, 945
BmrFI CCNGG 4 cut(s) 80, 99, 682, 937
BmsI GCATC 2 cut(s) 397, 457
BpiI GAAGAC 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 469, 671
BpuMI CCSGG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 636, 1134
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 262, 898
Bse3DI GCAATG 2 cut(s) 802, 984
BseBI CCWGG 3 cut(s) 99, 682, 937
BseDI CCNNGG 2 cut(s) 636, 1134
BseGI GGATG 2 cut(s) 250, 472
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 2 cut(s) 802, 984
BseMII CTCAG 5 cut(s) 308, 440, 519, 881, 1036
BseNI ACTGG 2 cut(s) 262, 898
BseRI GAGGAG 2 cut(s) 329, 648
BseXI GCAGC 3 cut(s) 536, 640, 1105
BshNI GGYRCC 1 cut(s) 943
BsiHKAI GWGCWC 2 cut(s) 134, 909
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 79, 125
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 4 cut(s) 41, 384, 520, 1078
BsmFI GGGAC 1 cut(s) 566
Bso31I GGTCTC 1 cut(s) 520
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 134, 909
Bsp143I GATC 5 cut(s) 63, 288, 341, 416, 454
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 1 cut(s) 584
BspCNI CTCAG 5 cut(s) 307, 439, 520, 880, 1035
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 162, 945
BspMAI CTGCAG 1 cut(s) 630
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 2 cut(s) 296, 462
BspQI GCTCTTC 1 cut(s) 914
BspT107I GGYRCC 1 cut(s) 943
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 802, 984
BsrI ACTGG 2 cut(s) 262, 898
BssECI CCNNGG 2 cut(s) 636, 1134
BssMI GATC 5 cut(s) 63, 288, 341, 416, 454
BssSI CACGAG 1 cut(s) 1003
BssT1I CCWWGG 1 cut(s) 1134
Bst2BI CACGAG 1 cut(s) 1003
Bst2UI CCWGG 3 cut(s) 99, 682, 937
Bst4CI ACNGT 3 cut(s) 605, 755, 1126
Bst6I CTCTTC 2 cut(s) 857, 914
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 8 cut(s) 26, 50, 294, 426, 528, 867, 1022, 1145
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 2 cut(s) 250, 472
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 5 cut(s) 66, 291, 344, 419, 457
BstMAI GTCTC 4 cut(s) 41, 384, 520, 1078
BstMBI GATC 5 cut(s) 63, 288, 341, 416, 454
BstMWI GCNNNNNNNGC 5 cut(s) 574, 583, 592, 888, 1139
BstNI CCWGG 3 cut(s) 99, 682, 937
BstSCI CCNGG 4 cut(s) 78, 97, 680, 935
BstSFI CTRYAG 1 cut(s) 626
BstV1I GCAGC 3 cut(s) 536, 640, 1105
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 1134
BtsCI GGATG 2 cut(s) 250, 472
BtsIMutI CAGTG 3 cut(s) 610, 875, 891
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 1 cut(s) 889
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 956
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 611, 944
CspCI CAANNNNNGTGG 4 cut(s) 1065, 1100, 1111, 1146
CviAII CATG 6 cut(s) 223, 241, 251, 460, 761, 1135
CviQI GTAC 2 cut(s) 611, 944
DdeI CTNAG 8 cut(s) 26, 50, 294, 426, 528, 867, 1022, 1145
DpnI GATC 5 cut(s) 65, 290, 343, 418, 456
DpnII GATC 5 cut(s) 63, 288, 341, 416, 454
Eam1104I CTCTTC 2 cut(s) 857, 914
EarI CTCTTC 2 cut(s) 857, 914
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 1134
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 1096
Eco72I CACGTG 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 3 cut(s) 97, 680, 935
EcoT14I CCWWGG 1 cut(s) 1134
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 1134
FaeI CATG 6 cut(s) 226, 244, 254, 463, 764, 1138
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 1 cut(s) 566
FatI CATG 6 cut(s) 222, 240, 250, 459, 760, 1134
FauI CCCGC 1 cut(s) 591
FauNDI CATATG 1 cut(s) 436
FblI GTMKAC 1 cut(s) 1018
Fnu4HI GCNGC 3 cut(s) 525, 629, 1119
FokI GGATG 2 cut(s) 257, 479
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 525, 629, 1119
FspBI CTAG 3 cut(s) 339, 404, 653
FspI TGCGCA 1 cut(s) 955
GlaI GCGC 1 cut(s) 955
GluI GCNGC 3 cut(s) 525, 629, 1119
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 2 cut(s) 79, 125
HgaI GACGC 1 cut(s) 650
HhaI GCGC 1 cut(s) 956
Hin1II CATG 6 cut(s) 226, 244, 254, 463, 764, 1138
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 9 cut(s) 94, 215, 237, 369, 597, 667, 865, 1020, 1095
HpaII CCGG 2 cut(s) 79, 125
HphI GGTGA 2 cut(s) 103, 687
Hpy166II GTNNAC 2 cut(s) 1019, 1108
Hpy188I TCNGA 6 cut(s) 346, 391, 672, 714, 786, 1115
Hpy188III TCNNGA 5 cut(s) 44, 70, 251, 339, 404
Hpy8I GTNNAC 2 cut(s) 1019, 1108
HpyAV CCTTC 4 cut(s) 50, 359, 702, 785
HpyCH4III ACNGT 3 cut(s) 605, 755, 1126
HpyCH4IV ACGT 1 cut(s) 841
HpyCH4V TGCA 5 cut(s) 305, 440, 628, 977, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 574, 583, 592, 888, 1139
HpyF3I CTNAG 8 cut(s) 26, 50, 294, 426, 528, 867, 1022, 1145
HpySE526I ACGT 1 cut(s) 841
Hsp92II CATG 6 cut(s) 226, 244, 254, 463, 764, 1138
HspAI GCGC 1 cut(s) 954
KpnI GGTACC 1 cut(s) 947
Kzo9I GATC 5 cut(s) 63, 288, 341, 416, 454
LguI GCTCTTC 1 cut(s) 914
LmnI GCTCC 3 cut(s) 137, 160, 661
Lsp1109I GCAGC 3 cut(s) 536, 640, 1105
LweI GCATC 2 cut(s) 397, 457
MaeI CTAG 3 cut(s) 339, 404, 653
MaeII ACGT 1 cut(s) 841
MaeIII GTNAC 1 cut(s) 646
MalI GATC 5 cut(s) 65, 290, 343, 418, 456
MboI GATC 5 cut(s) 63, 288, 341, 416, 454
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 134, 909
MluCI AATT 5 cut(s) 392, 500, 876, 962, 1039
MlyI GAGTC 4 cut(s) 231, 676, 859, 1014
MnlI CCTC 7 cut(s) 95, 307, 310, 631, 669, 749, 964
MseI TTAA 5 cut(s) 138, 278, 413, 542, 1038
MslI CAYNNNNRTG 2 cut(s) 765, 896
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 2 cut(s) 79, 125
MspR9I CCNGG 4 cut(s) 80, 99, 682, 937
MunI CAATTG 1 cut(s) 876
MvaI CCWGG 3 cut(s) 99, 682, 937
MwoI GCNNNNNNNGC 5 cut(s) 574, 583, 592, 888, 1139
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 1134
NdeI CATATG 1 cut(s) 436
NdeII GATC 5 cut(s) 63, 288, 341, 416, 454
NlaIII CATG 6 cut(s) 226, 244, 254, 463, 764, 1138
NlaIV GGNNCC 2 cut(s) 162, 945
NsbI TGCGCA 1 cut(s) 955
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 914
PfeI GAWTC 5 cut(s) 94, 215, 369, 597, 1095
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 3 cut(s) 526, 630, 1120
PleI GAGTC 4 cut(s) 231, 675, 859, 1014
PmaCI CACGTG 1 cut(s) 842
PmlI CACGTG 1 cut(s) 842
PpsI GAGTC 4 cut(s) 231, 675, 859, 1014
Ppu21I YACGTR 1 cut(s) 842
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 3 cut(s) 97, 680, 935
PspCI CACGTG 1 cut(s) 842
PspGI CCWGG 3 cut(s) 97, 680, 935
PspN4I GGNNCC 2 cut(s) 162, 945
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 630
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 612, 945
RsaNI GTAC 2 cut(s) 611, 944
RseI CAYNNNNRTG 2 cut(s) 765, 896
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 914
SaqAI TTAA 5 cut(s) 138, 278, 413, 542, 1038
SatI GCNGC 3 cut(s) 525, 629, 1119
Sau3AI GATC 5 cut(s) 63, 288, 341, 416, 454
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 4 cut(s) 231, 676, 859, 1014
ScrFI CCNGG 4 cut(s) 80, 99, 682, 937
SduI GDGCHC 2 cut(s) 134, 909
SfaNI GCATC 2 cut(s) 397, 457
SfcI CTRYAG 1 cut(s) 626
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 765, 896
SmlI CTYRAG 2 cut(s) 484, 686
SmoI CTYRAG 2 cut(s) 484, 686
Sse9I AATT 5 cut(s) 392, 500, 876, 962, 1039
SsiI CCGC 1 cut(s) 584
SspMI CTAG 3 cut(s) 339, 404, 653
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 4 cut(s) 78, 97, 680, 935
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 3 cut(s) 605, 755, 1126
TaiI ACGT 1 cut(s) 844
TaqI TCGA 4 cut(s) 372, 600, 855, 969
TasI AATT 5 cut(s) 392, 500, 876, 962, 1039
TfiI GAWTC 5 cut(s) 94, 215, 369, 597, 1095
Tru1I TTAA 5 cut(s) 138, 278, 413, 542, 1038
Tru9I TTAA 5 cut(s) 138, 278, 413, 542, 1038
TscAI CASTG 3 cut(s) 610, 875, 898
TseI GCWGC 3 cut(s) 524, 628, 1118
TspDTI ATGAA 6 cut(s) 239, 242, 267, 524, 749, 813
TspRI CASTG 3 cut(s) 610, 875, 898
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 260
XbaI TCTAGA 2 cut(s) 338, 403
XmiI GTMKAC 1 cut(s) 1018
XspI CTAG 3 cut(s) 339, 404, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.