Prupe.8G245900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012133
Physical Location & Seq
Forward (+)
21345848 .. 21349182
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G245900.1

Sequence Viewer

Length: 1245 bp
ATGGCAGATAAGCTTTGTTTGATGGCTTCTCATGGCTACCCTCACGGCCTTGTTTTACAGCAAGAGCAGGGCATGGGTATTATCAAGGATTTTCAACCCCTTCTGCCGAGTTATGGAGCAAAGCAGGAAATCACAAAACTGGGATCTTTGAAATTGATGCCGCAGCAAGGTGAGGAGCCATGGAAACTCGCTAGTGGATTGCCAGAGGCTAACTGGTTTGCCAAGACCGAAAGGCCTGTACTCACTGACATGCAAAATGTTCATCCAGACTCAGTGCTGTTCAGTATTGGAATTGCTGAACACTTCATAAGACGTGAAAAAATGTTGCAGTTCCTCAAGTCTGGAGAAACTGAAGCAGAGAAAGGCGGACTAGATATAACCGTACTATATAACTTGATGGGGTTACATGAAATGAGCCAACAAGCATTCATTCCTTCTCTTATCTACCCAAGTAGTGAGTTTAATACCCAGAAGCCTCTCTTGGACTTTGTGGGAGGTCTTGCCTGGAGTTCCAAAATTACAGTTCAGCCAGATGGTCGAGTCTTATTTACAGGTACAGGGACTGAGATGGAGCATCTCCTTTCAGTTGTTGCTGAGTTTTACTCATTGAGAAACTCAGTTTGTTGGAAAAAGCAGTCTGTGCTGGTTCCGCACTTCAATAGGGTGGAGAGCAGGGAAGCAGGAGCTAATATTGATGGAACTTTTTTGAAGATGCAAGTGACTACCCTTGCTCCTTTAAAGAGTCCGGAAAAAGTCAAAAAAAAGGCAACACAAAAGCAGAAGAGTGGGAAAAGAGTAGGCAAAGATAGAGATCTCTACAAGAGGAACTATTTCCACGCCTGTGAGAGCCTTCTATCTTTAATGATTAACAGAAGGCAGCATGGGAAATCAGCAATTCTCTCACTTCAAAGATCTGGCCCTGAGGTTCCAGAGCTCCTCACCCAGTTTTCTGCTAGTATCGCTGGAACTGGCTTAGCTCTCCTATTCTCTGTCCTCTGTAAAGTAGGTTGTGGGAGGGGGCCCTTTTGTGCGTCCAAACTCTTGAATACTGGAGTTGCAATTGGGTTAGTTTGGCTCTCTTGGGCAGTGAACAAGCTGAGGGACACAATTATTCATATCAGCAAGAATTCAAAGAAGTTGGATCTAAAAGAAGAGGAAATAATGGAAAGGGTAGAGGGAAGCGTGAAAGAGATTTACTTTAGAGCTGCAACACTGATGGCAGTGGCCGTGTTGAGGCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.03

Weight (kDa)

9.3

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 3 cut(s) 161, 366, 650
AclWI GGATC 2 cut(s) 151, 1149
AcoI YGGCCR 1 cut(s) 1224
AcsI RAATTY 1 cut(s) 1126
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 3 cut(s) 240, 384, 556
AfiI CCNNNNNNNGG 3 cut(s) 113, 167, 1233
AgsI TTSAA 7 cut(s) 95, 151, 658, 709, 908, 1045, 1131
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AleI CACNNNNGTG 1 cut(s) 840
AluBI AGCT 6 cut(s) 13, 686, 934, 977, 1096, 1205
AluI AGCT 6 cut(s) 13, 686, 934, 977, 1096, 1205
Alw21I GWGCWC 1 cut(s) 936
AlwI GGATC 2 cut(s) 151, 1149
AlwNI CAGNNNCTG 1 cut(s) 563
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 5 cut(s) 46, 233, 916, 1019, 1224
ApaI GGGCCC 1 cut(s) 1023
ApeKI GCWGC 3 cut(s) 163, 877, 1205
ApoI RAATTY 1 cut(s) 1126
Asp700I GAANNNNTTC 1 cut(s) 830
AspS9I GGNCC 3 cut(s) 917, 1019, 1020
AsuHPI GGTGA 2 cut(s) 182, 931
AxyI CCTNAGG 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 1023
BanII GRGCYC 2 cut(s) 936, 1023
Bbv12I GWGCWC 1 cut(s) 936
BbvCI CCTCAGC 1 cut(s) 1097
BbvI GCAGC 3 cut(s) 175, 889, 1192
BccI CCATC 6 cut(s) 16, 391, 527, 562, 689, 1210
BceAI ACGGC 2 cut(s) 61, 1211
BciT130I CCWGG 1 cut(s) 505
BfaI CTAG 3 cut(s) 192, 371, 954
BglII AGATCT 2 cut(s) 811, 911
BisI GCNGC 4 cut(s) 161, 164, 878, 1206
BlpI GCTNAGC 1 cut(s) 973
BlsI GCNGC 4 cut(s) 162, 165, 879, 1207
Bme1390I CCNGG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 917, 1019, 1020
BmiI GGNNCC 5 cut(s) 177, 648, 927, 1020, 1021
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 2 cut(s) 149, 937
BmsI GCATC 3 cut(s) 147, 583, 702
BmuI ACTGGG 2 cut(s) 149, 937
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BpmI CTGGAG 3 cut(s) 363, 526, 1071
Bpu10I CCTNAGC 1 cut(s) 1097
Bpu1102I GCTNAGC 1 cut(s) 973
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 810
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 167, 1233
Bse1I ACTGG 5 cut(s) 144, 218, 943, 973, 1054
Bse21I CCTNAGG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 810
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 3 cut(s) 113, 167, 1233
BseMII CTCAG 6 cut(s) 285, 555, 585, 630, 912, 1088
BseNI ACTGG 5 cut(s) 144, 218, 943, 973, 1054
BseRI GAGGAG 2 cut(s) 188, 926
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 3 cut(s) 175, 889, 1192
BshFI GGCC 5 cut(s) 48, 235, 918, 1021, 1226
BsiHKAI GWGCWC 1 cut(s) 936
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 2 cut(s) 574, 1115
BslI CCNNNNNNNGG 3 cut(s) 113, 167, 1233
BsmFI GGGAC 2 cut(s) 574, 1115
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 5 cut(s) 48, 235, 918, 1021, 1226
Bsp120I GGGCCC 1 cut(s) 1019
Bsp1286I GDGCHC 2 cut(s) 936, 1023
Bsp13I TCCGGA 1 cut(s) 745
Bsp143I GATC 4 cut(s) 143, 811, 911, 1141
Bsp1720I GCTNAGC 1 cut(s) 973
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 3 cut(s) 161, 366, 650
BspANI GGCC 5 cut(s) 48, 235, 918, 1021, 1226
BspCNI CTCAG 6 cut(s) 284, 556, 586, 629, 913, 1089
BspEI TCCGGA 1 cut(s) 745
BspLI GGNNCC 5 cut(s) 177, 648, 927, 1020, 1021
BspPI GGATC 2 cut(s) 151, 1149
BsrI ACTGG 5 cut(s) 144, 218, 943, 973, 1054
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 4 cut(s) 143, 811, 911, 1141
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 382, 523
Bst6I CTCTTC 2 cut(s) 776, 1146
BstAPI GCANNNNNTGC 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 1239
BstDEI CTNAG 7 cut(s) 271, 564, 594, 616, 921, 973, 1097
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 4 cut(s) 146, 814, 914, 1144
BstMBI GATC 4 cut(s) 143, 811, 911, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 640, 649, 959
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 1023
BstV1I GCAGC 3 cut(s) 175, 889, 1192
BstX2I RGATCY 4 cut(s) 143, 811, 911, 1141
BstYI RGATCY 4 cut(s) 143, 811, 911, 1141
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 5 cut(s) 48, 235, 918, 1021, 1226
BtgI CCRYGG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 2 cut(s) 1092, 1227
BtsIMutI CAGTG 5 cut(s) 243, 279, 1092, 1211, 1227
Cac8I GCNNGC 1 cut(s) 1239
CaiI CAGNNNCTG 1 cut(s) 563
Cfr13I GGNCC 3 cut(s) 917, 1019, 1020
CseI GACGC 1 cut(s) 1020
Csp6I GTAC 3 cut(s) 239, 383, 555
CviAII CATG 6 cut(s) 32, 73, 180, 250, 407, 881
CviQI GTAC 3 cut(s) 239, 383, 555
DdeI CTNAG 7 cut(s) 271, 564, 594, 616, 921, 973, 1097
DpnI GATC 4 cut(s) 145, 813, 913, 1143
DpnII GATC 4 cut(s) 143, 811, 911, 1141
DraI TTTAAA 1 cut(s) 738
EaeI YGGCCR 1 cut(s) 1224
Eam1104I CTCTTC 2 cut(s) 776, 1146
EarI CTCTTC 2 cut(s) 776, 1146
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 934
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 936, 1023
Eco53kI GAGCTC 1 cut(s) 934
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 921
EcoICRI GAGCTC 1 cut(s) 934
EcoO109I RGGNCCY 2 cut(s) 1019, 1020
EcoRI GAATTC 1 cut(s) 1126
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 2 cut(s) 936, 1023
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 6 cut(s) 35, 76, 183, 253, 410, 884
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 2 cut(s) 574, 1115
FatI CATG 6 cut(s) 31, 72, 179, 249, 406, 880
Fnu4HI GCNGC 4 cut(s) 161, 164, 878, 1206
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 2 cut(s) 936, 1023
Fsp4HI GCNGC 4 cut(s) 161, 164, 878, 1206
FspBI CTAG 3 cut(s) 192, 371, 954
GluI GCNGC 4 cut(s) 161, 164, 878, 1206
GsuI CTGGAG 3 cut(s) 363, 526, 1071
HaeIII GGCC 5 cut(s) 48, 235, 918, 1021, 1226
HapII CCGG 1 cut(s) 746
HgaI GACGC 1 cut(s) 1020
Hin1II CATG 6 cut(s) 35, 76, 183, 253, 410, 884
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 269, 540, 742
HpaII CCGG 1 cut(s) 746
HphI GGTGA 2 cut(s) 182, 931
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188III TCNNGA 5 cut(s) 266, 342, 746, 929, 1042
Hpy8I GTNNAC 1 cut(s) 1090
HpyAV CCTTC 4 cut(s) 110, 444, 860, 867
HpyCH4III ACNGT 2 cut(s) 382, 523
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 5 cut(s) 253, 328, 715, 1058, 1208
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 649, 959
HpyF3I CTNAG 7 cut(s) 271, 564, 594, 616, 921, 973, 1097
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 6 cut(s) 35, 76, 183, 253, 410, 884
Kpn2I TCCGGA 1 cut(s) 745
Kzo9I GATC 4 cut(s) 143, 811, 911, 1141
LmnI GCTCC 6 cut(s) 116, 175, 571, 683, 736, 939
Lsp1109I GCAGC 3 cut(s) 175, 889, 1192
LweI GCATC 3 cut(s) 147, 583, 702
MaeI CTAG 3 cut(s) 192, 371, 954
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 402, 718
MalI GATC 4 cut(s) 145, 813, 913, 1143
MboI GATC 4 cut(s) 143, 811, 911, 1141
MboII GAAGA 3 cut(s) 721, 793, 1163
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 4 cut(s) 143, 811, 911, 1141
MhlI GDGCHC 2 cut(s) 936, 1023
MluCI AATT 7 cut(s) 152, 291, 516, 894, 1059, 1107, 1126
MlyI GAGTC 3 cut(s) 263, 549, 751
MmeI TCCRAC 2 cut(s) 605, 1119
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 830
MseI TTAA 4 cut(s) 462, 737, 860, 867
MslI CAYNNNNRTG 2 cut(s) 248, 840
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 640, 649, 959
NcoI CCATGG 1 cut(s) 179
NdeII GATC 4 cut(s) 143, 811, 911, 1141
NlaIII CATG 6 cut(s) 35, 76, 183, 253, 410, 884
NlaIV GGNNCC 5 cut(s) 177, 648, 927, 1020, 1021
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 718
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 840
PceI AGGCCT 1 cut(s) 235
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 830
PkrI GCNGC 4 cut(s) 162, 165, 879, 1207
PleI GAGTC 3 cut(s) 263, 548, 750
PpsI GAGTC 3 cut(s) 263, 548, 750
Psp124BI GAGCTC 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 5 cut(s) 177, 648, 927, 1020, 1021
PspOMI GGGCCC 1 cut(s) 1019
PspPI GGNCC 3 cut(s) 917, 1019, 1020
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 4 cut(s) 143, 811, 911, 1141
RsaI GTAC 3 cut(s) 240, 384, 556
RsaNI GTAC 3 cut(s) 239, 383, 555
RseI CAYNNNNRTG 2 cut(s) 248, 840
SacI GAGCTC 1 cut(s) 936
SaqAI TTAA 4 cut(s) 462, 737, 860, 867
SatI GCNGC 4 cut(s) 161, 164, 878, 1206
Sau3AI GATC 4 cut(s) 143, 811, 911, 1141
Sau96I GGNCC 3 cut(s) 917, 1019, 1020
SchI GAGTC 3 cut(s) 263, 549, 751
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 2 cut(s) 936, 1023
SfaNI GCATC 3 cut(s) 147, 583, 702
SmiMI CAYNNNNRTG 2 cut(s) 248, 840
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 7 cut(s) 152, 291, 516, 894, 1059, 1107, 1126
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 161, 366, 650
SspI AATATT 1 cut(s) 691
SspMI CTAG 3 cut(s) 192, 371, 954
SstI GAGCTC 1 cut(s) 936
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 382, 523
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 538
TaqII GACCGA 1 cut(s) 242
TasI AATT 7 cut(s) 152, 291, 516, 894, 1059, 1107, 1126
TatI WGTACW 1 cut(s) 238
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 4 cut(s) 462, 737, 860, 867
Tru9I TTAA 4 cut(s) 462, 737, 860, 867
TscAI CASTG 5 cut(s) 250, 279, 1092, 1218, 1227
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 3 cut(s) 163, 877, 1205
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 5 cut(s) 251, 295, 418, 423, 1103
TspRI CASTG 5 cut(s) 250, 279, 1092, 1218, 1227
XapI RAATTY 1 cut(s) 1126
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 3 cut(s) 192, 371, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.