Rh6CG347800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012133
Physical Location & Seq
Forward (+)
53883820 .. 53888367
4548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG347800.1

Sequence Viewer

Length: 1170 bp
ATGCAGGATTTCCAACCCTTCCTGCCGAATTATGGAGCAAAACAGGAAATTACAAAGTTGGGATCTTTAAAAATGATGCCTCAGCAATGTGAGGAGCCATGGAGAGCAATAAGTGGATTTTCAGAGTCTAACTGGTTTGCCAAGACTGCCTCAGATATTGAAAGGCCTGCATTCACTGATGTGCAAGATGTTCATCGAGATTCAGTGCTTTTCAGCTCTGGGATTGCTGAGCATTTCTTACGACATGAAAAAATGGCGCAGTTTCTCATGTCCAGAGAAAGTGAAGTAGAGAGAGGTGGACTAGATATAACTTCACTATATGACTTGATGGGGTTAAATGAAATGCACCAAAAGCCCTTAATACCTTCTCTCATCTACCCAAGTAGTGAGTCGAATACAAAGCCTCTCTTGGACTTTGTTGGTGGTTTGGCATCTAGTTCTAAAATTACATTTCAGCCAGATGGTCGAGTCTTCTTCACTGGTACAGGGACTGAGATGAAGCATCTCCTTTCAGTTGTTGCGGAGTTTTACTCATTGAAAACCTCAGCTAATTTGGGAAAGCATTCTGTTCTGGTTCCGTACTTTGATAGGTTCCAGTTCAGGGAAAAAGTCAATATTGATGGTTCTCCTTTGAAGATGCATGGGACTACAGTTGCTCCTTTAAAGAGTCCTGAAAAATTCAAGACAAGGGGGATGCCTAAGGAGAAGAATGGAAAAAAGTTGGGCAGAGACAGAGATCTATACACGAGGAACTATTTCCACGCCTGTGAGAGCCTTCTATCATTAATGATCGACAGAAAGAAGAATGGGAAATCAGCAATTCATTCACTTCAAAAATCTGGCACTGAGCTTCCTCAGCTCCTGACCCAGTTTTCTGCCAGTATTGCTGGAACAGGATTGGCTGTCCTTTTCTCTGTTGTCTGTAAAGTAGCTTGTGCAAGGGTACCCTTCTGCTCGTATAAACTCTTGAACACTGGAGTTGGATTTGGGTTAGTTTGGCTGTCTTGGTCAGTGAATAAGCTGAGGGACACAATTGTTCCTATCAGCAAGAATCCAAGGAAGTCGGATTTAAAAGAAGAAGAAATATTGATGAGGGTGGAGACGAGCGTGAATGAGATTTACTTCAGAGCTGCAGCATTGATGGCGGTGGCGGTGTTGAGGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

43.63

Weight (kDa)

9.24

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 943
AciI CCGC 3 cut(s) 521, 1145, 1151
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 1108
AfaI GTAC 3 cut(s) 484, 581, 945
AfiI CCNNNNNNNGG 2 cut(s) 32, 601
AgsI TTSAA 6 cut(s) 161, 538, 634, 682, 833, 970
AleI CACNNNNGTG 2 cut(s) 179, 765
AluBI AGCT 7 cut(s) 216, 548, 850, 859, 932, 1021, 1130
AluI AGCT 7 cut(s) 216, 548, 850, 859, 932, 1021, 1130
Alw26I GTCTC 2 cut(s) 723, 1094
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 2 cut(s) 491, 862
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 1130, 1133
ApoI RAATTY 1 cut(s) 677
AseI ATTAAT 1 cut(s) 785
Asp700I GAANNNNTTC 2 cut(s) 562, 755
Asp718I GGTACC 1 cut(s) 943
AspLEI GCGC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 699
BanI GGYRCC 1 cut(s) 943
BauI CACGAG 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 463
BbvCI CCTCAGC 4 cut(s) 81, 544, 855, 1022
BbvI GCAGC 2 cut(s) 1117, 1145
BccI CCATC 4 cut(s) 322, 455, 614, 1135
BcoDI GTCTC 2 cut(s) 723, 1094
BfaI CTAG 2 cut(s) 302, 435
BfmI CTRYAG 2 cut(s) 648, 1131
BglII AGATCT 1 cut(s) 736
BisI GCNGC 2 cut(s) 1131, 1134
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 2 cut(s) 1132, 1135
BmiI GGNNCC 4 cut(s) 96, 576, 593, 945
BmrI ACTGGG 1 cut(s) 862
BmsI GCATC 5 cut(s) 66, 440, 511, 627, 684
BmuI ACTGGG 1 cut(s) 862
BpiI GAAGAC 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 996
Bpu10I CCTNAGC 4 cut(s) 81, 544, 855, 1022
Bpu1102I GCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 98, 1055
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 601
Bse1I ACTGG 6 cut(s) 137, 484, 595, 868, 879, 979
Bse21I CCTNAGG 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 98, 1055
BseGI GGATG 1 cut(s) 699
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 32, 601
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 8 cut(s) 95, 165, 219, 483, 558, 837, 869, 1013
BseNI ACTGG 6 cut(s) 137, 484, 595, 868, 879, 979
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 1117, 1145
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 943
BslFI GGGAC 3 cut(s) 502, 658, 1040
BslI CCNNNNNNNGG 2 cut(s) 32, 601
BsmAI GTCTC 2 cut(s) 723, 1094
BsmBI CGTCTC 1 cut(s) 1094
BsmFI GGGAC 3 cut(s) 502, 658, 1040
BsmI GAATGC 2 cut(s) 170, 562
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 62, 736, 789
Bsp1720I GCTNAGC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 3 cut(s) 521, 1145, 1151
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 8 cut(s) 94, 164, 220, 484, 557, 838, 868, 1014
BspLI GGNNCC 4 cut(s) 96, 576, 593, 945
BspMAI CTGCAG 1 cut(s) 1135
BspPI GGATC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 943
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 6 cut(s) 137, 484, 595, 868, 879, 979
BssECI CCNNGG 2 cut(s) 98, 1055
BssMI GATC 3 cut(s) 62, 736, 789
BssSI CACGAG 1 cut(s) 745
BssT1I CCWWGG 2 cut(s) 98, 1055
Bst2BI CACGAG 1 cut(s) 745
Bst4CI ACNGT 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 9 cut(s) 81, 151, 228, 492, 544, 699, 846, 855, 1022
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 699
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 65, 739, 792
BstMAI GTCTC 2 cut(s) 723, 1094
BstMBI GATC 3 cut(s) 62, 736, 789
BstMWI GCNNNNNNNGC 5 cut(s) 146, 352, 856, 884, 1142
BstSFI CTRYAG 2 cut(s) 648, 1131
BstV1I GCAGC 2 cut(s) 1117, 1145
BstV2I GAAGAC 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 62, 736
BstYI RGATCY 2 cut(s) 62, 736
Bsu36I CCTNAGG 1 cut(s) 699
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 699
BtsIMutI CAGTG 6 cut(s) 174, 210, 477, 843, 972, 1017
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 2 cut(s) 491, 862
CfoI GCGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 483, 580, 944
CviAII CATG 4 cut(s) 99, 245, 268, 641
CviQI GTAC 3 cut(s) 483, 580, 944
DdeI CTNAG 9 cut(s) 81, 151, 228, 492, 544, 699, 846, 855, 1022
DpnI GATC 3 cut(s) 64, 738, 791
DpnII GATC 3 cut(s) 62, 736, 789
DraI TTTAAA 3 cut(s) 69, 663, 1071
Eco130I CCWWGG 2 cut(s) 98, 1055
Eco147I AGGCCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 1108
Eco81I CCTNAGG 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 98, 1055
EcoT22I ATGCAT 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 98, 1055
Esp3I CGTCTC 1 cut(s) 1094
FaeI CATG 4 cut(s) 102, 248, 271, 644
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 3 cut(s) 502, 658, 1040
FatI CATG 4 cut(s) 98, 244, 267, 640
Fnu4HI GCNGC 2 cut(s) 1131, 1134
FokI GGATG 1 cut(s) 706
Fsp4HI GCNGC 2 cut(s) 1131, 1134
FspBI CTAG 2 cut(s) 302, 435
GlaI GCGC 1 cut(s) 258
GluI GCNGC 2 cut(s) 1131, 1134
GsuI CTGGAG 1 cut(s) 996
HaeIII GGCC 1 cut(s) 166
HhaI GCGC 1 cut(s) 259
Hin1II CATG 4 cut(s) 102, 248, 271, 644
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 6 cut(s) 125, 200, 389, 468, 667, 1051
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 4 cut(s) 124, 154, 1066, 1127
Hpy188III TCNNGA 6 cut(s) 197, 273, 671, 682, 862, 967
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 28, 375, 785, 958
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4V TGCA 7 cut(s) 4, 170, 184, 346, 640, 938, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 352, 856, 884, 1142
HpyF3I CTNAG 9 cut(s) 81, 151, 228, 492, 544, 699, 846, 855, 1022
Hsp92II CATG 4 cut(s) 102, 248, 271, 644
HspAI GCGC 1 cut(s) 257
KpnI GGTACC 1 cut(s) 947
Kzo9I GATC 3 cut(s) 62, 736, 789
LmnI GCTCC 4 cut(s) 35, 94, 661, 864
Lsp1109I GCAGC 2 cut(s) 1117, 1145
LweI GCATC 5 cut(s) 66, 440, 511, 627, 684
MaeI CTAG 2 cut(s) 302, 435
MalI GATC 3 cut(s) 64, 738, 791
MboI GATC 3 cut(s) 62, 736, 789
MboII GAAGA 7 cut(s) 463, 466, 646, 718, 814, 1088, 1091
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 2 cut(s) 62, 736
MluCI AATT 7 cut(s) 28, 48, 444, 550, 677, 819, 1032
MlyI GAGTC 4 cut(s) 134, 398, 477, 676
MmeI TCCRAC 3 cut(s) 37, 961, 1044
Mph1103I ATGCAT 1 cut(s) 642
MroXI GAANNNNTTC 2 cut(s) 562, 755
MseI TTAA 6 cut(s) 68, 335, 359, 662, 785, 1070
MslI CAYNNNNRTG 2 cut(s) 179, 765
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 2 cut(s) 170, 562
MwoI GCNNNNNNNGC 5 cut(s) 146, 352, 856, 884, 1142
NcoI CCATGG 1 cut(s) 98
NdeII GATC 3 cut(s) 62, 736, 789
NlaIII CATG 4 cut(s) 102, 248, 271, 644
NlaIV GGNNCC 4 cut(s) 96, 576, 593, 945
NsiI ATGCAT 1 cut(s) 642
OliI CACNNNNGTG 2 cut(s) 179, 765
PceI AGGCCT 1 cut(s) 166
PctI GAATGC 2 cut(s) 170, 562
PdmI GAANNNNTTC 2 cut(s) 562, 755
PfeI GAWTC 2 cut(s) 200, 1051
PkrI GCNGC 2 cut(s) 1132, 1135
PleI GAGTC 4 cut(s) 133, 397, 476, 675
PpsI GAGTC 4 cut(s) 133, 397, 476, 675
PshBI ATTAAT 1 cut(s) 785
PspN4I GGNNCC 4 cut(s) 96, 576, 593, 945
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 2 cut(s) 491, 862
PsuI RGATCY 2 cut(s) 62, 736
RsaI GTAC 3 cut(s) 484, 581, 945
RsaNI GTAC 3 cut(s) 483, 580, 944
RseI CAYNNNNRTG 2 cut(s) 179, 765
SaqAI TTAA 6 cut(s) 68, 335, 359, 662, 785, 1070
SatI GCNGC 2 cut(s) 1131, 1134
Sau3AI GATC 3 cut(s) 62, 736, 789
SchI GAGTC 4 cut(s) 134, 398, 477, 676
SfaNI GCATC 5 cut(s) 66, 440, 511, 627, 684
SfcI CTRYAG 2 cut(s) 648, 1131
SmiMI CAYNNNNRTG 2 cut(s) 179, 765
Sse9I AATT 7 cut(s) 28, 48, 444, 550, 677, 819, 1032
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 3 cut(s) 521, 1145, 1151
SspI AATATT 2 cut(s) 616, 1086
SspMI CTAG 2 cut(s) 302, 435
StuI AGGCCT 1 cut(s) 166
StyI CCWWGG 2 cut(s) 98, 1055
TaaI ACNGT 1 cut(s) 652
TaqI TCGA 4 cut(s) 196, 392, 466, 792
TasI AATT 7 cut(s) 28, 48, 444, 550, 677, 819, 1032
TfiI GAWTC 2 cut(s) 200, 1051
Tru1I TTAA 6 cut(s) 68, 335, 359, 662, 785, 1070
Tru9I TTAA 6 cut(s) 68, 335, 359, 662, 785, 1070
TscAI CASTG 6 cut(s) 181, 210, 484, 850, 979, 1017
TseI GCWGC 2 cut(s) 1130, 1133
TspDTI ATGAA 5 cut(s) 182, 261, 354, 512, 812
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 6 cut(s) 181, 210, 484, 850, 979, 1017
VspI ATTAAT 1 cut(s) 785
XapI RAATTY 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 562, 755
XspI CTAG 2 cut(s) 302, 435
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.