pycom03g21510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012133
Physical Location & Seq
Forward (+)
21806683 .. 21808970
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21510.1

Sequence Viewer

Length: 1098 bp
ATGCCGCAGCAATGTGAGGAGCCATGGAAACTCAAAAGTGGACTGCCGGAGGCCAACTGGTTTGTAAAGACTGTCTCAGAAATTGAAAGACCTGCTCTGAATGTGCAAGATGTTCGTCCTGACTCAGTGCTGTTCAGCTGTGGAATTGCCGAACACTTCATAAGACGTGAAAAAATGTTGCAGTTCCTCAGATCAGGAGAAAGTGAAGTGGAGAGAGGCGGAATAGATATAACCTTACTATATGACTTGATGGGGTTACATGAAATGGGCCAACAGCCATCAATGCCTTCTCTTATCTACCCGAATAGTGAGTTGAATACCCAGATGCCCCTCTTGGACTTTGTAGGCAGCCTTCACTGGAGTTCAAAAGTTACAGTTCAGCCCGATGGTCGAGTCTTATTCACAGGTACCGAGGCTGAGATGAAGCATCTCCTTTCAGTTGTTGCTGAATTTTACTCCTTGAGAAACACAGTTGTTTGGAAAAAGCAGTCTGTGTTGGTTCCGCACTTTAAGAGTGTGGGGAGCCGGGAAGCAGGAGTTGTTATTGATGGAACTTCGTTCAATATGCAAGCTACTACCCTTGCTCCTTTAAAGAGTCCCGAAAAAGTTAAGACAAAGGCGAAGCCAAAGCAGAAGAGTGGTAAAAAAGCGGGCAAAGATAGAGATCTCTACAAGAGGAACTATTTCCACGCCTGTGAGAGCCTTCTATCCATAATGATGAGCAGAAAACAGAATGGGAAAGTGGCAATCCTTTCACTTAAACGATCTGGCCCCGAGCTTCCAGATCTCCTGACCCAGTTTTCTGCCGCTATTGCTGGAACTGGGTTGGCTGTCCTCTTCTCTGTCCTCTGTAAAGTAGCTTCTGGGAGGGTACCCTTTTGTGCGTCCAAACTCTTGAATACTGGAGTTGCATTTGCATTAGTTTGGCTCTCTTGTGGGGTGAACAAACTGAGGGACACAATCGTGCAAATCAGCAAGAATTCAAAGAAGCGGGCTTTAAAAGACGAGGAAATCATGGAAAGGGTAGATAGAAGCGTGAAGGAGATTTACTTGAGAGCGGGAACATTGATGGCAGTGGCGGTGTTGAGGCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

40.57

Weight (kDa)

9.53

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
Acc65I GGTACC 2 cut(s) 407, 871
AccB1I GGYRCC 2 cut(s) 407, 871
AccBSI CCGCTC 1 cut(s) 1058
AciI CCGC 8 cut(s) 5, 219, 503, 650, 807, 991, 1058, 1079
AcsI RAATTY 2 cut(s) 449, 979
AfaI GTAC 2 cut(s) 409, 873
AgsI TTSAA 6 cut(s) 86, 316, 366, 562, 898, 984
AjiI CACGTC 1 cut(s) 167
AleI CACNNNNGTG 2 cut(s) 693, 962
AluBI AGCT 4 cut(s) 138, 572, 778, 860
AluI AGCT 4 cut(s) 138, 572, 778, 860
Alw26I GTCTC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 3 cut(s) 51, 268, 769
ApeKI GCWGC 2 cut(s) 7, 348
ApoI RAATTY 2 cut(s) 449, 979
Asp700I GAANNNNTTC 1 cut(s) 683
Asp718I GGTACC 2 cut(s) 407, 871
AspS9I GGNCC 2 cut(s) 268, 770
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 773
BanI GGYRCC 2 cut(s) 407, 871
BarI GAAGNNNNNNTAC 6 cut(s) 336, 368, 844, 876, 1031, 1063
BbvI GCAGC 2 cut(s) 19, 360
BccI CCATC 5 cut(s) 244, 286, 380, 542, 1063
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 100
BglII AGATCT 2 cut(s) 664, 784
BisI GCNGC 4 cut(s) 5, 8, 349, 807
BlsI GCNGC 4 cut(s) 6, 9, 350, 808
Bme1390I CCNGG 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 773
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 268, 770
BmiI GGNNCC 6 cut(s) 21, 409, 501, 524, 772, 873
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 2 cut(s) 790, 831
BmsI GCATC 2 cut(s) 315, 436
BmuI ACTGGG 2 cut(s) 790, 831
BpmI CTGGAG 2 cut(s) 379, 924
BpuEI CTTGAG 2 cut(s) 481, 1072
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 23, 411
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bse1I ACTGG 5 cut(s) 62, 362, 796, 826, 907
Bse3DI GCAATG 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 23, 411
BseJI GATNNNNATC 1 cut(s) 663
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 5 cut(s) 90, 138, 202, 408, 941
BseNI ACTGG 5 cut(s) 62, 362, 796, 826, 907
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 19, 360
BshFI GGCC 3 cut(s) 53, 270, 771
BshNI GGYRCC 2 cut(s) 407, 871
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 47, 526
BslFI GGGAC 2 cut(s) 582, 968
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 582, 968
BsnI GGCC 3 cut(s) 53, 270, 771
BsoBI CYCGRG 1 cut(s) 773
Bsp143I GATC 4 cut(s) 191, 664, 764, 784
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 8 cut(s) 5, 219, 503, 650, 807, 991, 1058, 1079
BspANI GGCC 3 cut(s) 53, 270, 771
BspCNI CTCAG 5 cut(s) 89, 137, 201, 409, 942
BspLI GGNNCC 6 cut(s) 21, 409, 501, 524, 772, 873
BspMI ACCTGC 1 cut(s) 100
BspT107I GGYRCC 2 cut(s) 407, 871
BsrBI CCGCTC 1 cut(s) 1058
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 5 cut(s) 62, 362, 796, 826, 907
BssECI CCNNGG 2 cut(s) 23, 411
BssMI GATC 4 cut(s) 191, 664, 764, 784
BssT1I CCWWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 73, 376, 472
Bst6I CTCTTC 2 cut(s) 629, 842
BstC8I GCNNGC 4 cut(s) 570, 652, 993, 1092
BstDEI CTNAG 5 cut(s) 76, 124, 188, 417, 950
BstDSI CCRYGG 1 cut(s) 23
BstKTI GATC 4 cut(s) 194, 667, 767, 787
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 191, 664, 764, 784
BstMWI GCNNNNNNNGC 2 cut(s) 283, 812
BstSCI CCNGG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 19, 360
BstX2I RGATCY 2 cut(s) 664, 784
BstYI RGATCY 2 cut(s) 664, 784
BsuRI GGCC 3 cut(s) 53, 270, 771
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 132, 355, 1080
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 4 cut(s) 570, 652, 993, 1092
Cfr13I GGNCC 2 cut(s) 268, 770
CseI GACGC 1 cut(s) 873
Csp6I GTAC 2 cut(s) 408, 872
CviAII CATG 3 cut(s) 24, 260, 1015
CviQI GTAC 2 cut(s) 408, 872
DdeI CTNAG 5 cut(s) 76, 124, 188, 417, 950
DpnI GATC 4 cut(s) 193, 666, 766, 786
DpnII GATC 4 cut(s) 191, 664, 764, 784
DraI TTTAAA 2 cut(s) 591, 999
Eam1104I CTCTTC 2 cut(s) 629, 842
EarI CTCTTC 2 cut(s) 629, 842
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 27, 263, 1018
FaiI YATR 9 cut(s) 25, 161, 230, 241, 243, 261, 566, 713, 1016
FaqI GGGAC 2 cut(s) 582, 968
FatI CATG 3 cut(s) 23, 259, 1014
FauI CCCGC 3 cut(s) 643, 984, 1051
Fnu4HI GCNGC 4 cut(s) 5, 8, 349, 807
Fsp4HI GCNGC 4 cut(s) 5, 8, 349, 807
GluI GCNGC 4 cut(s) 5, 8, 349, 807
GsuI CTGGAG 2 cut(s) 379, 924
HaeIII GGCC 3 cut(s) 53, 270, 771
HapII CCGG 2 cut(s) 47, 526
HgaI GACGC 1 cut(s) 873
Hin1II CATG 3 cut(s) 27, 263, 1018
HinfI GANTC 3 cut(s) 122, 393, 595
HpaII CCGG 2 cut(s) 47, 526
HphI GGTGA 1 cut(s) 952
Hpy166II GTNNAC 2 cut(s) 41, 943
Hpy188I TCNGA 3 cut(s) 79, 99, 191
Hpy188III TCNNGA 6 cut(s) 119, 195, 599, 782, 790, 895
Hpy8I GTNNAC 2 cut(s) 41, 943
HpyAV CCTTC 4 cut(s) 297, 362, 713, 1033
HpyCH4III ACNGT 3 cut(s) 73, 376, 472
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 6 cut(s) 106, 181, 568, 911, 917, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 812
HpyF3I CTNAG 5 cut(s) 76, 124, 188, 417, 950
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 3 cut(s) 27, 263, 1018
KpnI GGTACC 2 cut(s) 411, 875
Kzo9I GATC 4 cut(s) 191, 664, 764, 784
LmnI GCTCC 3 cut(s) 19, 522, 589
Lsp1109I GCAGC 2 cut(s) 19, 360
LweI GCATC 2 cut(s) 315, 436
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 2 cut(s) 255, 370
MalI GATC 4 cut(s) 193, 666, 766, 786
MbiI CCGCTC 1 cut(s) 1058
MboI GATC 4 cut(s) 191, 664, 764, 784
MboII GAAGA 2 cut(s) 646, 829
MflI RGATCY 2 cut(s) 664, 784
MluCI AATT 4 cut(s) 81, 144, 449, 979
MlyI GAGTC 3 cut(s) 116, 402, 604
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 5 cut(s) 510, 590, 609, 759, 998
MslI CAYNNNNRTG 3 cut(s) 693, 716, 962
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 2 cut(s) 47, 526
MspR9I CCNGG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 283, 812
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 1 cut(s) 23
NdeII GATC 4 cut(s) 191, 664, 764, 784
NlaIII CATG 3 cut(s) 27, 263, 1018
NlaIV GGNNCC 6 cut(s) 21, 409, 501, 524, 772, 873
OliI CACNNNNGTG 2 cut(s) 693, 962
PdmI GAANNNNTTC 1 cut(s) 683
PkrI GCNGC 4 cut(s) 6, 9, 350, 808
PleI GAGTC 3 cut(s) 116, 401, 603
PpsI GAGTC 3 cut(s) 116, 401, 603
PspN4I GGNNCC 6 cut(s) 21, 409, 501, 524, 772, 873
PspPI GGNCC 2 cut(s) 268, 770
PsuI RGATCY 2 cut(s) 664, 784
PvuII CAGCTG 1 cut(s) 138
RsaI GTAC 2 cut(s) 409, 873
RsaNI GTAC 2 cut(s) 408, 872
RseI CAYNNNNRTG 3 cut(s) 693, 716, 962
SaqAI TTAA 5 cut(s) 510, 590, 609, 759, 998
SatI GCNGC 4 cut(s) 5, 8, 349, 807
Sau3AI GATC 4 cut(s) 191, 664, 764, 784
Sau96I GGNCC 2 cut(s) 268, 770
SchI GAGTC 3 cut(s) 116, 402, 604
ScrFI CCNGG 1 cut(s) 527
SetI ASST 8 cut(s) 94, 140, 169, 236, 409, 574, 780, 862
SfaNI GCATC 2 cut(s) 315, 436
SmiMI CAYNNNNRTG 3 cut(s) 693, 716, 962
SmlI CTYRAG 2 cut(s) 460, 1051
SmoI CTYRAG 2 cut(s) 460, 1051
Sse9I AATT 4 cut(s) 81, 144, 449, 979
SsiI CCGC 8 cut(s) 5, 219, 503, 650, 807, 991, 1058, 1079
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 3 cut(s) 73, 376, 472
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 391
TasI AATT 4 cut(s) 81, 144, 449, 979
TauI GCSGC 2 cut(s) 7, 809
Tru1I TTAA 5 cut(s) 510, 590, 609, 759, 998
Tru9I TTAA 5 cut(s) 510, 590, 609, 759, 998
TscAI CASTG 3 cut(s) 132, 362, 1080
TseI GCWGC 2 cut(s) 7, 348
TspDTI ATGAA 3 cut(s) 148, 276, 437
TspRI CASTG 3 cut(s) 132, 362, 1080
XapI RAATTY 2 cut(s) 449, 979
XmnI GAANNNNTTC 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.