Rw6G029110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012133
Physical Location & Seq
Forward (+)
53242870 .. 53246545
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029110.1

Sequence Viewer

Length: 1251 bp
ATGGTGGATAACGTTTGCCTGATGGCCTCTCATGGCTACCCTCATGGGCTTGTTTTGCAACAAGAACAGAACATGGGCATCATTAAGGATTTCCAACCCTTCCTGCCGAATTATGGAGCAAAACAGGAAATTACAAAGTTGGGATCTTTAAAAATGATGCCTCAGCAATGTGAGGAGCCATGGAGAGCAATAAGTGGATTGTCAGAGTCTAACTGGTTTGCCAAGACTGCCTCAGATATTGAAAGGCCTGCATTCACTGATGTGCAAGATGTTCATCGAGATTCAGTGCTTTTCAGCTCTGGGATTGCTGAGCATTTCTTACGACATGAAAAAATGGCGAAGTTTCTCATGTCCGGAGAAAGTGAAGTAGAGAGAGGTGGACTAGATATAACTTCACTATATGACTTGATGGGGTTAAATGAAATGCACCAAAAGCCCTTAATACCTTCTCTCATCTACCCAAGTAGTGAGTCGAATACAAAGCCTCTCTTGGACTTTGTTGGTGGTTTGGCATCTAGTTCTAAAATTACATTTCAGCCAGATGGTCGAGTCTTCTTCACTGGTACAGGGACTGAGATGAAGCATCTCCTTTCAGTTGTTGCGGAGTTTTACTCATTGAAAACCTCAGCTAATTTGGGAAAGCATTCTGTTCTGGTTCCGTACTTTGATCGGTTCCAGTTCAGGGAAAAAGTCAATATTGATGGTTCTCCTTTGAAGATGCATGGGACTACAGTTGCTCCTTTAAAGAGTCCTGAAAAATTCAAGACAAGGGGGATGCCTAAGCAGAAGAATGGAAAAAAGTTGGGCAGAGACAGAGATCTATACACGAGGAACTATTTCCACGCCTGTGAGAGCCTTCTATCGTTAATGATCGACAGAAAGAAGAATGGGAAATCAGCAATTCATTCACTTCAAAAATCTGGCACTGAGCTTCCTCAGCTACTGACCCAGTTTTCTGCCAGTATTGCTGGAACAGGATTGGCTGTCCTTTTCTCTGTTGTCTGTAAAGTAGCTTGTGCAAGGGTACCCTTCTGCTCGTATAAACTCTTGAACACTGGAGTTGGATTTGGGTTAGTTTGGCTGTCTTGGTCAGTGAATAAGCTGAGGGACACAATTGTTCCTATCAGCAAGAATCCAAGGAAGTCGGATTTAAAAGAAGAGGAAATATTGAGGAGGGTGGAGACGAGCGTGAATGAGATTTACTTCAGAGCTGCAGCATTGATGGCGGTGGCGGTGTTGAGGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

46.47

Weight (kDa)

9.24

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1024
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 3 cut(s) 602, 1226, 1232
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 1189
AfaI GTAC 3 cut(s) 565, 662, 1026
AfiI CCNNNNNNNGG 2 cut(s) 113, 682
AgsI TTSAA 6 cut(s) 242, 619, 715, 763, 914, 1051
AleI CACNNNNGTG 2 cut(s) 260, 846
AluBI AGCT 7 cut(s) 297, 629, 931, 940, 1013, 1102, 1211
AluI AGCT 7 cut(s) 297, 629, 931, 940, 1013, 1102, 1211
Alw26I GTCTC 2 cut(s) 804, 1175
AlwI GGATC 1 cut(s) 151
AlwNI CAGNNNCTG 2 cut(s) 572, 943
Aor13HI TCCGGA 1 cut(s) 353
AoxI GGCC 2 cut(s) 24, 245
ApeKI GCWGC 2 cut(s) 1211, 1214
ApoI RAATTY 1 cut(s) 758
Asp700I GAANNNNTTC 2 cut(s) 643, 836
Asp718I GGTACC 1 cut(s) 1024
BanI GGYRCC 1 cut(s) 1024
BauI CACGAG 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 544
BbvCI CCTCAGC 4 cut(s) 162, 625, 936, 1103
BbvI GCAGC 2 cut(s) 1198, 1226
BccI CCATC 5 cut(s) 16, 403, 536, 695, 1216
BcoDI GTCTC 2 cut(s) 804, 1175
BfaI CTAG 2 cut(s) 383, 516
BfmI CTRYAG 2 cut(s) 729, 1212
BglII AGATCT 1 cut(s) 817
BisI GCNGC 2 cut(s) 1212, 1215
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 1213, 1216
BmiI GGNNCC 4 cut(s) 177, 657, 674, 1026
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 6 cut(s) 87, 147, 521, 592, 708, 765
BmuI ACTGGG 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 5 cut(s) 162, 625, 780, 936, 1103
Bpu1102I GCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 179, 1136
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 682
Bse1I ACTGG 6 cut(s) 218, 565, 676, 949, 960, 1060
Bse3DI GCAATG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 179, 1136
BseGI GGATG 1 cut(s) 780
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 113, 682
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 8 cut(s) 176, 246, 300, 564, 639, 918, 950, 1094
BseNI ACTGG 6 cut(s) 218, 565, 676, 949, 960, 1060
BseRI GAGGAG 2 cut(s) 188, 1186
BseXI GCAGC 2 cut(s) 1198, 1226
BshFI GGCC 2 cut(s) 26, 247
BshNI GGYRCC 1 cut(s) 1024
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 3 cut(s) 583, 739, 1121
BslI CCNNNNNNNGG 2 cut(s) 113, 682
BsmAI GTCTC 2 cut(s) 804, 1175
BsmBI CGTCTC 1 cut(s) 1175
BsmFI GGGAC 3 cut(s) 583, 739, 1121
BsmI GAATGC 2 cut(s) 251, 643
BsnI GGCC 2 cut(s) 26, 247
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 4 cut(s) 143, 667, 817, 870
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 3 cut(s) 602, 1226, 1232
BspANI GGCC 2 cut(s) 26, 247
BspCNI CTCAG 8 cut(s) 175, 245, 301, 565, 638, 919, 949, 1095
BspEI TCCGGA 1 cut(s) 353
BspLI GGNNCC 4 cut(s) 177, 657, 674, 1026
BspMAI CTGCAG 1 cut(s) 1216
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 1024
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 6 cut(s) 218, 565, 676, 949, 960, 1060
BssECI CCNNGG 2 cut(s) 179, 1136
BssMI GATC 4 cut(s) 143, 667, 817, 870
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 2 cut(s) 179, 1136
Bst2BI CACGAG 1 cut(s) 826
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 1 cut(s) 1152
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 9 cut(s) 162, 232, 309, 573, 625, 780, 927, 936, 1103
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 780
BstKTI GATC 4 cut(s) 146, 670, 820, 873
BstMAI GTCTC 2 cut(s) 804, 1175
BstMBI GATC 4 cut(s) 143, 667, 817, 870
BstMWI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
BstSFI CTRYAG 2 cut(s) 729, 1212
BstV1I GCAGC 2 cut(s) 1198, 1226
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 143, 817
BstYI RGATCY 2 cut(s) 143, 817
BsuRI GGCC 2 cut(s) 26, 247
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 780
BtsIMutI CAGTG 6 cut(s) 255, 291, 558, 924, 1053, 1098
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 2 cut(s) 572, 943
Csp6I GTAC 3 cut(s) 564, 661, 1025
CviAII CATG 7 cut(s) 32, 44, 73, 180, 326, 349, 722
CviQI GTAC 3 cut(s) 564, 661, 1025
DdeI CTNAG 9 cut(s) 162, 232, 309, 573, 625, 780, 927, 936, 1103
DpnI GATC 4 cut(s) 145, 669, 819, 872
DpnII GATC 4 cut(s) 143, 667, 817, 870
DraI TTTAAA 3 cut(s) 150, 744, 1152
Eam1104I CTCTTC 1 cut(s) 1152
EarI CTCTTC 1 cut(s) 1152
Eco130I CCWWGG 2 cut(s) 179, 1136
Eco147I AGGCCT 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 1189
EcoT14I CCWWGG 2 cut(s) 179, 1136
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 179, 1136
Esp3I CGTCTC 1 cut(s) 1175
FaeI CATG 7 cut(s) 35, 47, 76, 183, 329, 352, 725
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 3 cut(s) 583, 739, 1121
FatI CATG 7 cut(s) 31, 43, 72, 179, 325, 348, 721
Fnu4HI GCNGC 2 cut(s) 1212, 1215
FokI GGATG 1 cut(s) 787
Fsp4HI GCNGC 2 cut(s) 1212, 1215
FspBI CTAG 2 cut(s) 383, 516
GluI GCNGC 2 cut(s) 1212, 1215
GsuI CTGGAG 1 cut(s) 1077
HaeIII GGCC 2 cut(s) 26, 247
HapII CCGG 1 cut(s) 354
Hin1II CATG 7 cut(s) 35, 47, 76, 183, 329, 352, 725
HinfI GANTC 6 cut(s) 206, 281, 470, 549, 748, 1132
HpaII CCGG 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 4 cut(s) 205, 235, 1147, 1208
Hpy188III TCNNGA 5 cut(s) 278, 354, 752, 763, 1048
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 4 cut(s) 109, 456, 866, 1039
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 7 cut(s) 58, 251, 265, 427, 721, 1019, 1214
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
HpyF3I CTNAG 9 cut(s) 162, 232, 309, 573, 625, 780, 927, 936, 1103
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 7 cut(s) 35, 47, 76, 183, 329, 352, 725
Kpn2I TCCGGA 1 cut(s) 353
KpnI GGTACC 1 cut(s) 1028
Kzo9I GATC 4 cut(s) 143, 667, 817, 870
LmnI GCTCC 3 cut(s) 116, 175, 742
Lsp1109I GCAGC 2 cut(s) 1198, 1226
LweI GCATC 6 cut(s) 87, 147, 521, 592, 708, 765
MaeI CTAG 2 cut(s) 383, 516
MaeII ACGT 1 cut(s) 12
MalI GATC 4 cut(s) 145, 669, 819, 872
MboI GATC 4 cut(s) 143, 667, 817, 870
MboII GAAGA 6 cut(s) 544, 547, 727, 799, 895, 1169
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 2 cut(s) 143, 817
MluCI AATT 7 cut(s) 109, 129, 525, 631, 758, 900, 1113
MlyI GAGTC 4 cut(s) 215, 479, 558, 757
MmeI TCCRAC 3 cut(s) 118, 1042, 1125
Mph1103I ATGCAT 1 cut(s) 723
MroI TCCGGA 1 cut(s) 353
MroXI GAANNNNTTC 2 cut(s) 643, 836
MseI TTAA 7 cut(s) 84, 149, 416, 440, 743, 866, 1151
MslI CAYNNNNRTG 2 cut(s) 260, 846
MspI CCGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 2 cut(s) 251, 643
MwoI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
NcoI CCATGG 1 cut(s) 179
NdeII GATC 4 cut(s) 143, 667, 817, 870
NlaIII CATG 7 cut(s) 35, 47, 76, 183, 329, 352, 725
NlaIV GGNNCC 4 cut(s) 177, 657, 674, 1026
NsiI ATGCAT 1 cut(s) 723
OliI CACNNNNGTG 2 cut(s) 260, 846
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 2 cut(s) 251, 643
PdmI GAANNNNTTC 2 cut(s) 643, 836
PfeI GAWTC 2 cut(s) 281, 1132
PkrI GCNGC 2 cut(s) 1213, 1216
PleI GAGTC 4 cut(s) 214, 478, 557, 756
PpsI GAGTC 4 cut(s) 214, 478, 557, 756
Psp1406I AACGTT 1 cut(s) 12
PspN4I GGNNCC 4 cut(s) 177, 657, 674, 1026
PstI CTGCAG 1 cut(s) 1216
PstNI CAGNNNCTG 2 cut(s) 572, 943
PsuI RGATCY 2 cut(s) 143, 817
RsaI GTAC 3 cut(s) 565, 662, 1026
RsaNI GTAC 3 cut(s) 564, 661, 1025
RseI CAYNNNNRTG 2 cut(s) 260, 846
SaqAI TTAA 7 cut(s) 84, 149, 416, 440, 743, 866, 1151
SatI GCNGC 2 cut(s) 1212, 1215
Sau3AI GATC 4 cut(s) 143, 667, 817, 870
SchI GAGTC 4 cut(s) 215, 479, 558, 757
SfaNI GCATC 6 cut(s) 87, 147, 521, 592, 708, 765
SfcI CTRYAG 2 cut(s) 729, 1212
SmiMI CAYNNNNRTG 2 cut(s) 260, 846
Sse9I AATT 7 cut(s) 109, 129, 525, 631, 758, 900, 1113
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 3 cut(s) 602, 1226, 1232
SspI AATATT 2 cut(s) 697, 1167
SspMI CTAG 2 cut(s) 383, 516
StuI AGGCCT 1 cut(s) 247
StyI CCWWGG 2 cut(s) 179, 1136
TaaI ACNGT 1 cut(s) 733
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 277, 473, 547, 873
TasI AATT 7 cut(s) 109, 129, 525, 631, 758, 900, 1113
TfiI GAWTC 2 cut(s) 281, 1132
Tru1I TTAA 7 cut(s) 84, 149, 416, 440, 743, 866, 1151
Tru9I TTAA 7 cut(s) 84, 149, 416, 440, 743, 866, 1151
TscAI CASTG 6 cut(s) 262, 291, 565, 931, 1060, 1098
TseI GCWGC 2 cut(s) 1211, 1214
TspDTI ATGAA 5 cut(s) 263, 342, 435, 593, 893
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 6 cut(s) 262, 291, 565, 931, 1060, 1098
XapI RAATTY 1 cut(s) 758
XmnI GAANNNNTTC 2 cut(s) 643, 836
XspI CTAG 2 cut(s) 383, 516
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.