FvH4_2g24050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012133
Physical Location & Seq
Forward (+)
19644714 .. 19649093
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24050.t1

Sequence Viewer

Length: 1251 bp
ATGGTAAATAACCTTTGCTTGATGGCCTCCCATGGCTACCCTCATGGGCTCGTTTTGCAACAAGAACAGAACATGGGCATCATTAAGGATTTCCAACCCTTCCTGTCAAGTTATGGAACAAAACAGGAAATTACAAAGTTGGGATCTTTAAAACTGATGAATCAGAAATGTGAGGAGCCATGGAGAGCAATAAGTGGATTGTCAGAGTCCAACTGGTTTGCCAAGACTGCCTCAGATATGGAAAGGCCTGGACTCACTGATGTGCAAGATGTCCATCGAGATTCGGTGCTTTTCAGCTATGGGATTGCTGAGCACTTCTTACGACATGAAAAAATGGCGCAGTTGCTCATGTCTGGAGAAAGTGAAGCAGAGAGAGGTGGACTAGATATAACTTCATTATATGACTTAATGGGGTTAAATGAAATGCACCAAAAGCCCTTAATTCCTTCCCTCATCTACCCAAGTAGTGAGTCCAATACAAAGCCTCTCTTGGACTTCGTTGGTGGTCTGGCATCTAGTTCTAAGATTAAAGTTCAGTCAGATGGTCGAGTCTTGTTCACAGGTACGGGGACTGAGATGAAGCATCTCCTTTCAGTTGTTGCGGAGTTTTACTCATTGAAAAGCTCAGCTAGTTTGGGAAAGCATTCTGTTTTGGTTCCGTACTTTGATAGGTTCCAGTTCAGGGAAAAAGTCAATGTTGATGGTTCTCCTTTGAAGATGCATGGGACTACAGTTGCTCCTTTAAAGAGTCCTGAAAAATTCAAGACAAGGGGGATGCCAAAGCAGAAGAATGGGAAAAAGGTGGGGAGAGATAGAGATCTATACACAAGGAACTATTTCCATGCCTGTGAGAGCCTTCTATCTTTAATGATTGATAGAAAAAAGCATGGGAAATCAGCAATTCATTCACTTCAAAAATCTGGCCCTGAGCTTCCTCAGCTCCTGACCCAGTTTTCTGCCAGTATTGCTGGAACAGGCTTGGCTGTCCTTCTCTCTGTCGTCTATAAAGTAGCTTGTGCGAGGGTACCCTTCTGCTCGTCCAAACTCCTGAACACTGGAGTTGGATTTGGGTTAGTTTGGCTGTCTTGGTCAGTGAATAAGCTGAGGGACACGATTGTTCCTATCCGCAAGAATCCAAGGAAGTCAGATGTAAAAGAAGATGAAATATTGTCAAGGGTGGAGACGAGCGTGAATGAGATTTACTTCAGAGCTGCAGCATTGATGGCGGTGGCGGTGTTGAGGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

46.26

Weight (kDa)

9.38

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1024
AciI CCGC 4 cut(s) 602, 1126, 1226, 1232
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 1189
AfaI GTAC 3 cut(s) 565, 662, 1026
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 4 cut(s) 619, 715, 763, 914
AjnI CCWGG 1 cut(s) 247
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 8 cut(s) 297, 624, 629, 931, 940, 1013, 1102, 1211
AluI AGCT 8 cut(s) 297, 624, 629, 931, 940, 1013, 1102, 1211
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 1175
AlwI GGATC 1 cut(s) 151
AlwNI CAGNNNCTG 1 cut(s) 943
AoxI GGCC 3 cut(s) 24, 245, 922
ApeKI GCWGC 2 cut(s) 1211, 1214
ApoI RAATTY 1 cut(s) 758
Asp700I GAANNNNTTC 2 cut(s) 643, 836
Asp718I GGTACC 1 cut(s) 1024
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 923
BanI GGYRCC 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 315
BbvCI CCTCAGC 2 cut(s) 936, 1103
BbvI GCAGC 2 cut(s) 1198, 1226
BccI CCATC 5 cut(s) 16, 282, 536, 695, 1216
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 1175
BfaI CTAG 3 cut(s) 383, 516, 630
BfmI CTRYAG 2 cut(s) 729, 1212
BglII AGATCT 1 cut(s) 817
BisI GCNGC 2 cut(s) 1212, 1215
BlpI GCTNAGC 2 cut(s) 309, 625
BlsI GCNGC 2 cut(s) 1213, 1216
Bme1390I CCNGG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 923
BmiI GGNNCC 4 cut(s) 177, 657, 674, 1026
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 5 cut(s) 87, 521, 592, 708, 765
BmuI ACTGGG 1 cut(s) 943
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 2 cut(s) 375, 1077
Bpu10I CCTNAGC 3 cut(s) 927, 936, 1103
Bpu1102I GCTNAGC 2 cut(s) 309, 625
BsaBI GATNNNNATC 2 cut(s) 273, 816
BsaJI CCNNGG 3 cut(s) 31, 179, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse1I ACTGG 5 cut(s) 218, 676, 949, 960, 1060
Bse8I GATNNNNATC 2 cut(s) 273, 816
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 31, 179, 1136
BseGI GGATG 1 cut(s) 780
BseJI GATNNNNATC 2 cut(s) 273, 816
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 7 cut(s) 246, 300, 564, 639, 918, 950, 1094
BseNI ACTGG 5 cut(s) 218, 676, 949, 960, 1060
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 1198, 1226
BshFI GGCC 3 cut(s) 26, 247, 924
BshNI GGYRCC 1 cut(s) 1024
BsiHKAI GWGCWC 1 cut(s) 315
BslFI GGGAC 3 cut(s) 583, 739, 1121
BslI CCNNNNNNNGG 1 cut(s) 682
BsmAI GTCTC 1 cut(s) 1175
BsmBI CGTCTC 1 cut(s) 1175
BsmFI GGGAC 3 cut(s) 583, 739, 1121
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 26, 247, 924
Bsp1286I GDGCHC 2 cut(s) 51, 315
Bsp143I GATC 2 cut(s) 143, 817
Bsp1720I GCTNAGC 2 cut(s) 309, 625
Bsp19I CCATGG 2 cut(s) 31, 179
BspACI CCGC 4 cut(s) 602, 1126, 1226, 1232
BspANI GGCC 3 cut(s) 26, 247, 924
BspCNI CTCAG 7 cut(s) 245, 301, 565, 638, 919, 949, 1095
BspLI GGNNCC 4 cut(s) 177, 657, 674, 1026
BspMAI CTGCAG 1 cut(s) 1216
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 1024
BsrI ACTGG 5 cut(s) 218, 676, 949, 960, 1060
BssECI CCNNGG 3 cut(s) 31, 179, 1136
BssMI GATC 2 cut(s) 143, 817
BssT1I CCWWGG 3 cut(s) 31, 179, 1136
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 733
BstDEI CTNAG 8 cut(s) 232, 309, 522, 573, 625, 927, 936, 1103
BstDSI CCRYGG 2 cut(s) 31, 179
BstF5I GGATG 1 cut(s) 780
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 146, 820
BstMAI GTCTC 1 cut(s) 1175
BstMBI GATC 2 cut(s) 143, 817
BstMWI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 729, 1212
BstV1I GCAGC 2 cut(s) 1198, 1226
BstX2I RGATCY 2 cut(s) 143, 817
BstYI RGATCY 2 cut(s) 143, 817
BsuRI GGCC 3 cut(s) 26, 247, 924
BtgI CCRYGG 2 cut(s) 31, 179
BtsCI GGATG 1 cut(s) 780
BtsIMutI CAGTG 3 cut(s) 255, 1053, 1098
CaiI CAGNNNCTG 1 cut(s) 943
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 923
Csp6I GTAC 3 cut(s) 564, 661, 1025
CviAII CATG 9 cut(s) 32, 44, 73, 180, 326, 349, 722, 842, 887
CviQI GTAC 3 cut(s) 564, 661, 1025
DdeI CTNAG 8 cut(s) 232, 309, 522, 573, 625, 927, 936, 1103
DpnI GATC 2 cut(s) 145, 819
DpnII GATC 2 cut(s) 143, 817
DraI TTTAAA 2 cut(s) 150, 744
Eco130I CCWWGG 3 cut(s) 31, 179, 1136
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 1189
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 3 cut(s) 31, 179, 1136
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 3 cut(s) 31, 179, 1136
Esp3I CGTCTC 1 cut(s) 1175
FaeI CATG 9 cut(s) 35, 47, 76, 183, 329, 352, 725, 845, 890
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 3 cut(s) 583, 739, 1121
FatI CATG 9 cut(s) 31, 43, 72, 179, 325, 348, 721, 841, 886
Fnu4HI GCNGC 2 cut(s) 1212, 1215
FokI GGATG 1 cut(s) 787
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 1212, 1215
FspBI CTAG 3 cut(s) 383, 516, 630
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 1212, 1215
GsuI CTGGAG 2 cut(s) 375, 1077
HaeIII GGCC 3 cut(s) 26, 247, 924
HhaI GCGC 1 cut(s) 340
Hin1II CATG 9 cut(s) 35, 47, 76, 183, 329, 352, 725, 845, 890
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 8 cut(s) 160, 206, 252, 281, 470, 549, 748, 1132
Hpy166II GTNNAC 2 cut(s) 380, 558
Hpy188I TCNGA 6 cut(s) 165, 205, 235, 541, 1147, 1208
Hpy188III TCNNGA 6 cut(s) 278, 354, 752, 763, 943, 1048
Hpy8I GTNNAC 2 cut(s) 380, 558
HpyAV CCTTC 5 cut(s) 109, 456, 866, 998, 1039
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4V TGCA 5 cut(s) 58, 265, 427, 721, 1214
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
HpyF3I CTNAG 8 cut(s) 232, 309, 522, 573, 625, 927, 936, 1103
Hsp92II CATG 9 cut(s) 35, 47, 76, 183, 329, 352, 725, 845, 890
HspAI GCGC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 1028
Kzo9I GATC 2 cut(s) 143, 817
LmnI GCTCC 3 cut(s) 175, 742, 945
Lsp1109I GCAGC 2 cut(s) 1198, 1226
LweI GCATC 5 cut(s) 87, 521, 592, 708, 765
MaeI CTAG 3 cut(s) 383, 516, 630
MalI GATC 2 cut(s) 145, 819
MboI GATC 2 cut(s) 143, 817
MboII GAAGA 3 cut(s) 727, 799, 1169
MflI RGATCY 2 cut(s) 143, 817
MhlI GDGCHC 2 cut(s) 51, 315
MluCI AATT 4 cut(s) 129, 441, 758, 900
MlyI GAGTC 5 cut(s) 215, 246, 479, 558, 757
MmeI TCCRAC 3 cut(s) 118, 234, 1042
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 643, 836
MseI TTAA 8 cut(s) 84, 149, 407, 416, 440, 528, 743, 866
MslI CAYNNNNRTG 2 cut(s) 260, 846
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 6 cut(s) 55, 227, 433, 937, 965, 1223
NcoI CCATGG 2 cut(s) 31, 179
NdeII GATC 2 cut(s) 143, 817
NlaIII CATG 9 cut(s) 35, 47, 76, 183, 329, 352, 725, 845, 890
NlaIV GGNNCC 4 cut(s) 177, 657, 674, 1026
NsiI ATGCAT 1 cut(s) 723
OliI CACNNNNGTG 1 cut(s) 260
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 2 cut(s) 643, 836
PfeI GAWTC 3 cut(s) 160, 281, 1132
PkrI GCNGC 2 cut(s) 1213, 1216
PleI GAGTC 5 cut(s) 214, 246, 478, 557, 756
PpsI GAGTC 5 cut(s) 214, 246, 478, 557, 756
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 4 cut(s) 177, 657, 674, 1026
PspPI GGNCC 1 cut(s) 923
PstI CTGCAG 1 cut(s) 1216
PstNI CAGNNNCTG 1 cut(s) 943
PsuI RGATCY 2 cut(s) 143, 817
RsaI GTAC 3 cut(s) 565, 662, 1026
RsaNI GTAC 3 cut(s) 564, 661, 1025
RseI CAYNNNNRTG 2 cut(s) 260, 846
SaqAI TTAA 8 cut(s) 84, 149, 407, 416, 440, 528, 743, 866
SatI GCNGC 2 cut(s) 1212, 1215
Sau3AI GATC 2 cut(s) 143, 817
Sau96I GGNCC 1 cut(s) 923
SchI GAGTC 5 cut(s) 215, 246, 479, 558, 757
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 51, 315
SfaNI GCATC 5 cut(s) 87, 521, 592, 708, 765
SfcI CTRYAG 2 cut(s) 729, 1212
SmiMI CAYNNNNRTG 2 cut(s) 260, 846
Sse9I AATT 4 cut(s) 129, 441, 758, 900
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 4 cut(s) 602, 1126, 1226, 1232
SspI AATATT 1 cut(s) 1167
SspMI CTAG 3 cut(s) 383, 516, 630
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 3 cut(s) 31, 179, 1136
TaaI ACNGT 1 cut(s) 733
TaqI TCGA 2 cut(s) 277, 547
TasI AATT 4 cut(s) 129, 441, 758, 900
TfiI GAWTC 3 cut(s) 160, 281, 1132
Tru1I TTAA 8 cut(s) 84, 149, 407, 416, 440, 528, 743, 866
Tru9I TTAA 8 cut(s) 84, 149, 407, 416, 440, 528, 743, 866
TscAI CASTG 3 cut(s) 262, 1060, 1098
TseI GCWGC 2 cut(s) 1211, 1214
TspDTI ATGAA 7 cut(s) 173, 342, 384, 435, 593, 893, 1176
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 3 cut(s) 262, 1060, 1098
XapI RAATTY 1 cut(s) 758
XmnI GAANNNNTTC 2 cut(s) 643, 836
XspI CTAG 3 cut(s) 383, 516, 630
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.