Rmu_sc0001043.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001043.1
OG0012133
Physical Location & Seq
Forward (+)
61144 .. 64797
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001043.1_g000015.1.cds

Sequence Viewer

Length: 1230 bp
atggcctctcatggctaccctcatgggcttgttttgcaacaagaacagaacatgggcatcattaaggatttccaacccttcctgccgagttatggagcaaaacaggaaattacaaagttgggatctttaaaaatgatgcctcagcaatgtgaggagccatggagagcaataagtggattgtcagagtctaactggtttgccaagactgcctcagatattgaagggcctgcattcactgatgtgcaagatgttcatcgagattcagtgcttttcagctctgggattgctgagcatttcctacgacatgaaaaaatggcgcagtttctcatgtccggagaaagtgaagtagagagaggtggactagatataacttcactatatgacttgatggggttaaatgaaatgcaccaaaagcccttaataccttctctcatctacccaagtagtgagtcgaatacaaagcctctcttggactttgttggtggtctggcatctagttctaaaattacatttcagccagatggtcgagtcttcttcacaggtacagggactgagatgaagcatctcctttcggttgttgcggagttttactcattgaaaacctcagctaatttgggaaagcattctgttctggttccgtactttgataggttccagttcagggaaaaagtcaatattgatggttctcctttgaagatgcatgggactacagttgctcctttaaagagtcctgaaaaattcaagacaagggggatgcctaagcagaagaatggaaaaaagttgggcagagacagagatctatacacgaggaactatttccacgcctgtgagagccttctatcattaatgatcgacagaaagaagaatgggaaatcagcaattcattcacttcaaaaatctggcactgagcttcctcatctcctgacccagttttctgccagtattgctggaacaggattggctgtccttttctctgttgtctgtaaagtagcttgtgcaagggtacccttctgctcgtataaactcttgaacactggagttggatttgggttagtttggctgtcttggtcagtgaataagctgagggacacaattgttcctatcagcaagaatccaaggaagtcggatttaaaagaagaggaaatattgatgaggttggagacgagcgtaaatgagatttacttcagagctgcagcattgatggcggtggcggtgttgaggtttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

45.56

Weight (kDa)

9.15

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 1 cut(s) 1003
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 3 cut(s) 581, 1205, 1211
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 1 cut(s) 1168
AfaI GTAC 3 cut(s) 544, 641, 1005
AfiI CCNNNNNNNGG 2 cut(s) 92, 661
AgsI TTSAA 6 cut(s) 221, 598, 694, 742, 893, 1030
AleI CACNNNNGTG 2 cut(s) 239, 825
AluBI AGCT 6 cut(s) 276, 608, 910, 992, 1081, 1190
AluI AGCT 6 cut(s) 276, 608, 910, 992, 1081, 1190
Alw26I GTCTC 2 cut(s) 783, 1154
AlwI GGATC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 551
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 2 cut(s) 3, 224
ApeKI GCWGC 2 cut(s) 1190, 1193
ApoI RAATTY 1 cut(s) 737
AseI ATTAAT 1 cut(s) 845
Asp700I GAANNNNTTC 2 cut(s) 622, 815
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 1003
BauI CACGAG 1 cut(s) 805
BbsI GAAGAC 1 cut(s) 523
BbvCI CCTCAGC 3 cut(s) 141, 604, 1082
BbvI GCAGC 2 cut(s) 1177, 1205
BccI CCATC 4 cut(s) 382, 515, 674, 1195
BcoDI GTCTC 2 cut(s) 783, 1154
BfaI CTAG 2 cut(s) 362, 495
BfmI CTRYAG 2 cut(s) 708, 1191
BglII AGATCT 1 cut(s) 796
BisI GCNGC 2 cut(s) 1191, 1194
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 2 cut(s) 1192, 1195
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 4 cut(s) 156, 636, 653, 1005
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 6 cut(s) 66, 126, 500, 571, 687, 744
BmuI ACTGGG 1 cut(s) 922
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 1 cut(s) 1056
Bpu10I CCTNAGC 4 cut(s) 141, 604, 759, 1082
Bpu1102I GCTNAGC 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 158, 1115
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 661
Bse1I ACTGG 5 cut(s) 197, 655, 928, 939, 1039
Bse3DI GCAATG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 158, 1115
BseGI GGATG 1 cut(s) 759
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 92, 661
BseMI GCAATG 1 cut(s) 152
BseMII CTCAG 7 cut(s) 155, 225, 279, 543, 618, 897, 1073
BseNI ACTGG 5 cut(s) 197, 655, 928, 939, 1039
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 1177, 1205
BshFI GGCC 2 cut(s) 5, 226
BshNI GGYRCC 1 cut(s) 1003
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 3 cut(s) 562, 718, 1100
BslI CCNNNNNNNGG 2 cut(s) 92, 661
BsmAI GTCTC 2 cut(s) 783, 1154
BsmBI CGTCTC 1 cut(s) 1154
BsmFI GGGAC 3 cut(s) 562, 718, 1100
BsmI GAATGC 2 cut(s) 230, 622
BsnI GGCC 2 cut(s) 5, 226
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 3 cut(s) 122, 796, 849
Bsp1720I GCTNAGC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 3 cut(s) 581, 1205, 1211
BspANI GGCC 2 cut(s) 5, 226
BspCNI CTCAG 7 cut(s) 154, 224, 280, 544, 617, 898, 1074
BspEI TCCGGA 1 cut(s) 332
BspLI GGNNCC 4 cut(s) 156, 636, 653, 1005
BspMAI CTGCAG 1 cut(s) 1195
BspPI GGATC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 1003
BsrDI GCAATG 1 cut(s) 152
BsrI ACTGG 5 cut(s) 197, 655, 928, 939, 1039
BssECI CCNNGG 2 cut(s) 158, 1115
BssMI GATC 3 cut(s) 122, 796, 849
BssSI CACGAG 1 cut(s) 805
BssT1I CCWWGG 2 cut(s) 158, 1115
Bst2BI CACGAG 1 cut(s) 805
Bst4CI ACNGT 1 cut(s) 712
Bst6I CTCTTC 1 cut(s) 1131
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 8 cut(s) 141, 211, 288, 552, 604, 759, 906, 1082
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 759
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 125, 799, 852
BstMAI GTCTC 2 cut(s) 783, 1154
BstMBI GATC 3 cut(s) 122, 796, 849
BstMWI GCNNNNNNNGC 5 cut(s) 34, 206, 412, 944, 1202
BstSFI CTRYAG 2 cut(s) 708, 1191
BstV1I GCAGC 2 cut(s) 1177, 1205
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 2 cut(s) 122, 796
BstYI RGATCY 2 cut(s) 122, 796
BsuRI GGCC 2 cut(s) 5, 226
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 759
BtsIMutI CAGTG 5 cut(s) 234, 270, 903, 1032, 1077
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 543, 640, 1004
CviAII CATG 7 cut(s) 11, 23, 52, 159, 305, 328, 701
CviQI GTAC 3 cut(s) 543, 640, 1004
DdeI CTNAG 8 cut(s) 141, 211, 288, 552, 604, 759, 906, 1082
DpnI GATC 3 cut(s) 124, 798, 851
DpnII GATC 3 cut(s) 122, 796, 849
DraI TTTAAA 3 cut(s) 129, 723, 1131
Eam1104I CTCTTC 1 cut(s) 1131
EarI CTCTTC 1 cut(s) 1131
Eco130I CCWWGG 2 cut(s) 158, 1115
Eco57I CTGAAG 1 cut(s) 1168
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 158, 1115
EcoT22I ATGCAT 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 158, 1115
Esp3I CGTCTC 1 cut(s) 1154
FaeI CATG 7 cut(s) 14, 26, 55, 162, 308, 331, 704
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 3 cut(s) 562, 718, 1100
FatI CATG 7 cut(s) 10, 22, 51, 158, 304, 327, 700
Fnu4HI GCNGC 2 cut(s) 1191, 1194
FokI GGATG 1 cut(s) 766
Fsp4HI GCNGC 2 cut(s) 1191, 1194
FspBI CTAG 2 cut(s) 362, 495
GlaI GCGC 1 cut(s) 318
GluI GCNGC 2 cut(s) 1191, 1194
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 2 cut(s) 5, 226
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 319
Hin1II CATG 7 cut(s) 14, 26, 55, 162, 308, 331, 704
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 6 cut(s) 185, 260, 449, 528, 727, 1111
HpaII CCGG 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 4 cut(s) 184, 214, 1126, 1187
Hpy188III TCNNGA 6 cut(s) 257, 333, 731, 742, 922, 1027
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 5 cut(s) 88, 215, 435, 845, 1018
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4V TGCA 7 cut(s) 37, 230, 244, 406, 700, 998, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 206, 412, 944, 1202
HpyF3I CTNAG 8 cut(s) 141, 211, 288, 552, 604, 759, 906, 1082
Hsp92II CATG 7 cut(s) 14, 26, 55, 162, 308, 331, 704
HspAI GCGC 1 cut(s) 317
Kpn2I TCCGGA 1 cut(s) 332
KpnI GGTACC 1 cut(s) 1007
Kzo9I GATC 3 cut(s) 122, 796, 849
LmnI GCTCC 3 cut(s) 95, 154, 721
Lsp1109I GCAGC 2 cut(s) 1177, 1205
LweI GCATC 6 cut(s) 66, 126, 500, 571, 687, 744
MaeI CTAG 2 cut(s) 362, 495
MalI GATC 3 cut(s) 124, 798, 851
MboI GATC 3 cut(s) 122, 796, 849
MboII GAAGA 6 cut(s) 523, 526, 706, 778, 874, 1148
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 122, 796
MluCI AATT 6 cut(s) 108, 504, 610, 737, 879, 1092
MlyI GAGTC 4 cut(s) 194, 458, 537, 736
MmeI TCCRAC 4 cut(s) 97, 1021, 1104, 1137
Mph1103I ATGCAT 1 cut(s) 702
MroI TCCGGA 1 cut(s) 332
MroXI GAANNNNTTC 2 cut(s) 622, 815
MseI TTAA 7 cut(s) 63, 128, 395, 419, 722, 845, 1130
MslI CAYNNNNRTG 2 cut(s) 239, 825
MspI CCGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 1092
Mva1269I GAATGC 2 cut(s) 230, 622
MwoI GCNNNNNNNGC 5 cut(s) 34, 206, 412, 944, 1202
NcoI CCATGG 1 cut(s) 158
NdeII GATC 3 cut(s) 122, 796, 849
NlaIII CATG 7 cut(s) 14, 26, 55, 162, 308, 331, 704
NlaIV GGNNCC 4 cut(s) 156, 636, 653, 1005
NmeAIII GCCGAG 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 702
OliI CACNNNNGTG 2 cut(s) 239, 825
PctI GAATGC 2 cut(s) 230, 622
PdmI GAANNNNTTC 2 cut(s) 622, 815
PfeI GAWTC 2 cut(s) 260, 1111
PkrI GCNGC 2 cut(s) 1192, 1195
PleI GAGTC 4 cut(s) 193, 457, 536, 735
PpsI GAGTC 4 cut(s) 193, 457, 536, 735
PshBI ATTAAT 1 cut(s) 845
PspN4I GGNNCC 4 cut(s) 156, 636, 653, 1005
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 1195
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 2 cut(s) 122, 796
RsaI GTAC 3 cut(s) 544, 641, 1005
RsaNI GTAC 3 cut(s) 543, 640, 1004
RseI CAYNNNNRTG 2 cut(s) 239, 825
SaqAI TTAA 7 cut(s) 63, 128, 395, 419, 722, 845, 1130
SatI GCNGC 2 cut(s) 1191, 1194
Sau3AI GATC 3 cut(s) 122, 796, 849
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 4 cut(s) 194, 458, 537, 736
SfaNI GCATC 6 cut(s) 66, 126, 500, 571, 687, 744
SfcI CTRYAG 2 cut(s) 708, 1191
SmiMI CAYNNNNRTG 2 cut(s) 239, 825
Sse9I AATT 6 cut(s) 108, 504, 610, 737, 879, 1092
SsiI CCGC 3 cut(s) 581, 1205, 1211
SspI AATATT 2 cut(s) 676, 1146
SspMI CTAG 2 cut(s) 362, 495
StyI CCWWGG 2 cut(s) 158, 1115
TaaI ACNGT 1 cut(s) 712
TaqI TCGA 4 cut(s) 256, 452, 526, 852
TasI AATT 6 cut(s) 108, 504, 610, 737, 879, 1092
TfiI GAWTC 2 cut(s) 260, 1111
Tru1I TTAA 7 cut(s) 63, 128, 395, 419, 722, 845, 1130
Tru9I TTAA 7 cut(s) 63, 128, 395, 419, 722, 845, 1130
TscAI CASTG 5 cut(s) 241, 270, 910, 1039, 1077
TseI GCWGC 2 cut(s) 1190, 1193
TspDTI ATGAA 5 cut(s) 242, 321, 414, 572, 872
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 5 cut(s) 241, 270, 910, 1039, 1077
VspI ATTAAT 1 cut(s) 845
XapI RAATTY 1 cut(s) 737
XmnI GAANNNNTTC 2 cut(s) 622, 815
XspI CTAG 2 cut(s) 362, 495
Zsp2I ATGCAT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.