MD11G1290800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012133
Physical Location & Seq
Forward (+)
41039855 .. 41043751
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1290800.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGCGGAAAAGCTTTGCCTGATGGCCTCCCATGGCTATCCTCACGGCCGCGTTCTGCACCAGGAGCAACTCATGAGCGTTATCAAGGATTTTCAACCCTTTATGCCAAGTTTTGGAGCAAAGGAGGAAATCACAAAGTTAGGGTCTTTGAAATTGGTGCCGCAGCAATGTGAGGAGCCATGGAAACTCACAAGTGGAGTGCCGGAGGCCAATTGGTTTGTAAAGACTGTCTCAGAAATTGAAAGACCTCCACTTAATTTGCAAGATGTTTGTCCAGACTCAGTGCTGTTCAGCATTGGAATTGCCGAACACTTCATAAAACGTGAAAAGATGTTGCAGTTCCTCAGATCAGGAGAGGGTGAAGTGGAGAGAGGCGCAGTAGATATAACCTTACTATATGACTTGATGGGGTTACATGAAATGGGCCAACAACCATTAATGCCATCTCTTATCTACCCGAGAAGTGAGTTCAATACCCAGAAGCCTCTCTTGGACTTTGTGGGCGATCTTCACTGGAGTTCGAAAATTACAGTTCAGCCAGATGGTCGAGTCTTATTCACAGGTACTGAGGCTGAGATGAAGCATCTCCTTTCAGTTGTAGCTGAATTTTACTCCTTGAGAAACACAGTTGTTTGGAAAAAGCAGTCTGTGTTGGTTCCGCACTTTAAGAGTGTGGGGAGCCGGGAAGCAGGAGTTATCATTGATGGAACTTTGGTCAATATGCAGGCGACTACGCTTGCTCCTTTGAAGAGTCCCGAAAAAGTTAAGACAAAGGCGCCCAAGCGGAGGAGTGGTAAAAAAGCAGGCAAAGATAGAGATCTCTACGAGCGGAACTACTTCCACGCCTGTGAGAGCCTTCTATCCATAATGATGAACAGAAAACAGCATGGGAAACTGGCAGTTCTCTCACTTAAAAAGTCCGGCCCAGAGCTTCCGGAACTCCTAACCCAGTTTTCTGCTGGTATCGCTGGAACTGGCTTGGCTGTCCTTTTCTCTGTCCTCTGTAAAGTAGCTTCTGGGAGGGTACCCCTTTGTGCGTCCAAACTCTTGAACACCGGAGTTGCATTTGCATTAGTCTGGCTCTCTTGGGGGGTGAATAAACTGAGGGACACAGTTGTTCAAATCAGGAAGAATTCAAAGAAGCCAGGTTTACAAGAAGAGGAAATAATGAAAAGGGTAGATAGAAGCGTGAACGAGATTTACTTGAGAGCCGGAACATTGATGGCGGTGGCGGTGTTGAGGCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

46.4

Weight (kDa)

9.37

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 3 cut(s) 157, 775, 1024
AccB7I CCANNNNNTGG 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 829
AccII CGCG 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 934
AciI CCGC 8 cut(s) 5, 49, 161, 659, 784, 829, 1226, 1232
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 605, 1132
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 2 cut(s) 565, 1026
AfiI CCNNNNNNNGG 2 cut(s) 113, 786
AgsI TTSAA 8 cut(s) 95, 151, 242, 472, 748, 1051, 1121, 1137
AjnI CCWGG 2 cut(s) 60, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AleI CACNNNNGTG 1 cut(s) 846
AluBI AGCT 4 cut(s) 13, 602, 931, 1013
AluI AGCT 4 cut(s) 13, 602, 931, 1013
Alw26I GTCTC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 457
Aor13HI TCCGGA 1 cut(s) 934
AoxI GGCC 5 cut(s) 24, 46, 207, 424, 922
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 605, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AseI ATTAAT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 1024
AspLEI GCGC 2 cut(s) 377, 778
AspS9I GGNCC 2 cut(s) 424, 923
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 371, 1105
AsuII TTCGAA 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 457
BanI GGYRCC 3 cut(s) 157, 775, 1024
BarI GAAGNNNNNNTAC 2 cut(s) 997, 1029
BbvI GCAGC 1 cut(s) 175
BccI CCATC 6 cut(s) 16, 400, 451, 536, 698, 1216
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 62, 1146
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 779
BglII AGATCT 1 cut(s) 817
BisI GCNGC 3 cut(s) 49, 161, 164
BlsI GCNGC 3 cut(s) 50, 162, 165
Bme1390I CCNGG 3 cut(s) 62, 683, 1146
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 424, 923
BmiI GGNNCC 6 cut(s) 159, 177, 657, 680, 777, 1026
BmrFI CCNGG 3 cut(s) 62, 683, 1146
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 943
BpmI CTGGAG 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 637, 1225
BpuMI CCSGG 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 776
BsaJI CCNNGG 2 cut(s) 31, 179
BsaWI WCCGGW 2 cut(s) 934, 1055
BsaXI ACNNNNNCTCC 4 cut(s) 724, 754, 778, 808
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 786
Bse1I ACTGG 4 cut(s) 518, 900, 949, 979
Bse3DI GCAATG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 816
BseAI TCCGGA 1 cut(s) 934
BseBI CCWGG 2 cut(s) 62, 1146
BseDI CCNNGG 2 cut(s) 31, 179
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 113, 786
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 6 cut(s) 246, 294, 358, 558, 564, 1094
BseNI ACTGG 4 cut(s) 518, 900, 949, 979
BseRI GAGGAG 2 cut(s) 188, 802
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 5 cut(s) 26, 48, 209, 426, 924
BshNI GGYRCC 3 cut(s) 157, 775, 1024
BsiEI CGRYCG 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 6 cut(s) 203, 682, 921, 935, 1056, 1212
BslFI GGGAC 2 cut(s) 738, 1121
BslI CCNNNNNNNGG 2 cut(s) 113, 786
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 738, 1121
BsnI GGCC 5 cut(s) 26, 48, 209, 426, 924
BsoBI CYCGRG 1 cut(s) 457
Bsp119I TTCGAA 1 cut(s) 521
Bsp13I TCCGGA 1 cut(s) 934
Bsp143I GATC 3 cut(s) 347, 505, 817
Bsp19I CCATGG 2 cut(s) 31, 179
BspACI CCGC 8 cut(s) 5, 49, 161, 659, 784, 829, 1226, 1232
BspANI GGCC 5 cut(s) 26, 48, 209, 426, 924
BspCNI CTCAG 6 cut(s) 245, 293, 357, 559, 565, 1095
BspEI TCCGGA 1 cut(s) 934
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 6 cut(s) 159, 177, 657, 680, 777, 1026
BspT104I TTCGAA 1 cut(s) 521
BspT107I GGYRCC 3 cut(s) 157, 775, 1024
BsrBI CCGCTC 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 4 cut(s) 518, 900, 949, 979
BssECI CCNNGG 2 cut(s) 31, 179
BssMI GATC 3 cut(s) 347, 505, 817
BssNI GRCGYC 1 cut(s) 776
BssT1I CCWWGG 2 cut(s) 31, 179
Bst2UI CCWGG 2 cut(s) 62, 1146
Bst4CI ACNGT 4 cut(s) 229, 532, 628, 1114
Bst6I CTCTTC 2 cut(s) 743, 1152
BstACI GRCGYC 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 726, 738, 805, 1245
BstDEI CTNAG 6 cut(s) 232, 280, 344, 567, 573, 1103
BstDSI CCRYGG 2 cut(s) 31, 179
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 2 cut(s) 377, 778
BstKTI GATC 3 cut(s) 350, 508, 820
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 347, 505, 817
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 64, 965
BstNI CCWGG 2 cut(s) 62, 1146
BstSCI CCNGG 3 cut(s) 60, 681, 1144
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 5 cut(s) 26, 48, 209, 426, 924
BtgI CCRYGG 2 cut(s) 31, 179
BtsIMutI CAGTG 2 cut(s) 288, 511
Cac8I GCNNGC 4 cut(s) 726, 738, 805, 1245
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 377, 778
Cfr13I GGNCC 2 cut(s) 424, 923
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 2 cut(s) 564, 1025
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 5 cut(s) 32, 73, 180, 416, 887
CviQI GTAC 2 cut(s) 564, 1025
DdeI CTNAG 6 cut(s) 232, 280, 344, 567, 573, 1103
DinI GGCGCC 1 cut(s) 777
DpnI GATC 3 cut(s) 349, 507, 819
DpnII GATC 3 cut(s) 347, 505, 817
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 743, 1152
EarI CTCTTC 2 cut(s) 743, 1152
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 31, 179
Eco52I CGGCCG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 60, 1144
EcoT14I CCWWGG 2 cut(s) 31, 179
EgeI GGCGCC 1 cut(s) 777
EheI GGCGCC 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 31, 179
FaeI CATG 5 cut(s) 35, 76, 183, 419, 890
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 738, 1121
FatI CATG 5 cut(s) 31, 72, 179, 415, 886
Fnu4HI GCNGC 3 cut(s) 49, 161, 164
Fsp4HI GCNGC 3 cut(s) 49, 161, 164
GlaI GCGC 2 cut(s) 376, 777
GluI GCNGC 3 cut(s) 49, 161, 164
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 5 cut(s) 26, 48, 209, 426, 924
HapII CCGG 6 cut(s) 203, 682, 921, 935, 1056, 1212
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 2 cut(s) 377, 778
Hin1I GRCGYC 1 cut(s) 776
Hin1II CATG 5 cut(s) 35, 76, 183, 419, 890
Hin6I GCGC 2 cut(s) 375, 776
HinP1I GCGC 2 cut(s) 375, 776
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 278, 549, 751
HpaII CCGG 6 cut(s) 203, 682, 921, 935, 1056, 1212
HphI GGTGA 2 cut(s) 371, 1105
Hpy166II GTNNAC 2 cut(s) 1151, 1192
Hpy188I TCNGA 2 cut(s) 235, 347
Hpy188III TCNNGA 7 cut(s) 73, 275, 351, 755, 935, 1048, 1126
Hpy8I GTNNAC 2 cut(s) 1151, 1192
HpyAV CCTTC 1 cut(s) 866
HpyCH4III ACNGT 4 cut(s) 229, 532, 628, 1114
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 6 cut(s) 58, 262, 337, 724, 1064, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 965
HpyF3I CTNAG 6 cut(s) 232, 280, 344, 567, 573, 1103
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 776
Hsp92II CATG 5 cut(s) 35, 76, 183, 419, 890
HspAI GCGC 2 cut(s) 375, 776
KasI GGCGCC 1 cut(s) 775
Kpn2I TCCGGA 1 cut(s) 934
KpnI GGTACC 1 cut(s) 1028
Kzo9I GATC 3 cut(s) 347, 505, 817
LmnI GCTCC 5 cut(s) 64, 116, 175, 678, 745
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 592
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 411
MalI GATC 3 cut(s) 349, 507, 819
MbiI CCGCTC 1 cut(s) 829
MboI GATC 3 cut(s) 347, 505, 817
MboII GAAGA 4 cut(s) 500, 760, 1141, 1169
MfeI CAATTG 1 cut(s) 211
MflI RGATCY 1 cut(s) 817
MluCI AATT 8 cut(s) 152, 211, 237, 256, 300, 525, 605, 1132
Mly113I GGCGCC 1 cut(s) 776
MlyI GAGTC 3 cut(s) 272, 558, 760
MroI TCCGGA 1 cut(s) 934
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 5 cut(s) 255, 437, 666, 765, 912
MslI CAYNNNNRTG 2 cut(s) 846, 869
MspI CCGG 6 cut(s) 203, 682, 921, 935, 1056, 1212
MspR9I CCNGG 3 cut(s) 62, 683, 1146
MunI CAATTG 1 cut(s) 211
MvaI CCWGG 2 cut(s) 62, 1146
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 64, 965
NarI GGCGCC 1 cut(s) 776
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 2 cut(s) 31, 179
NdeII GATC 3 cut(s) 347, 505, 817
NlaIII CATG 5 cut(s) 35, 76, 183, 419, 890
NlaIV GGNNCC 6 cut(s) 159, 177, 657, 680, 777, 1026
NspV TTCGAA 1 cut(s) 521
OliI CACNNNNGTG 1 cut(s) 846
PagI TCATGA 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 836
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 3 cut(s) 50, 162, 165
PleI GAGTC 3 cut(s) 272, 557, 759
PluTI GGCGCC 1 cut(s) 779
PpsI GAGTC 3 cut(s) 272, 557, 759
PshBI ATTAAT 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 60, 1144
PspGI CCWGG 2 cut(s) 60, 1144
PspN4I GGNNCC 6 cut(s) 159, 177, 657, 680, 777, 1026
PspPI GGNCC 2 cut(s) 424, 923
PsrI GAACNNNNNNTAC 2 cut(s) 1184, 1216
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 2 cut(s) 565, 1026
RsaNI GTAC 2 cut(s) 564, 1025
RseI CAYNNNNRTG 2 cut(s) 846, 869
SaqAI TTAA 5 cut(s) 255, 437, 666, 765, 912
SatI GCNGC 3 cut(s) 49, 161, 164
Sau3AI GATC 3 cut(s) 347, 505, 817
Sau96I GGNCC 2 cut(s) 424, 923
SchI GAGTC 3 cut(s) 272, 558, 760
ScrFI CCNGG 3 cut(s) 62, 683, 1146
SetI ASST 9 cut(s) 15, 250, 325, 392, 565, 604, 933, 1015, 1150
SfaNI GCATC 1 cut(s) 592
SfoI GGCGCC 1 cut(s) 777
SfuI TTCGAA 1 cut(s) 521
SmiMI CAYNNNNRTG 2 cut(s) 846, 869
SmlI CTYRAG 2 cut(s) 616, 1204
SmoI CTYRAG 2 cut(s) 616, 1204
Sse9I AATT 8 cut(s) 152, 211, 237, 256, 300, 525, 605, 1132
SsiI CCGC 8 cut(s) 5, 49, 161, 659, 784, 829, 1226, 1232
SspDI GGCGCC 1 cut(s) 775
StyD4I CCNGG 3 cut(s) 60, 681, 1144
StyI CCWWGG 2 cut(s) 31, 179
TaaI ACNGT 4 cut(s) 229, 532, 628, 1114
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 521, 547
TasI AATT 8 cut(s) 152, 211, 237, 256, 300, 525, 605, 1132
TauI GCSGC 2 cut(s) 51, 163
Tru1I TTAA 5 cut(s) 255, 437, 666, 765, 912
Tru9I TTAA 5 cut(s) 255, 437, 666, 765, 912
TscAI CASTG 2 cut(s) 288, 518
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 304, 432, 593, 887, 1184
TspRI CASTG 2 cut(s) 288, 518
Van91I CCANNNNNTGG 1 cut(s) 113
VspI ATTAAT 1 cut(s) 437
XapI RAATTY 2 cut(s) 605, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.