AT4G02920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012133
Physical Location & Seq
Forward (+)
1292483 .. 1295263
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02920.2

Sequence Viewer

Length: 1257 bp
ATGATCAAGCTTTGCTTCATGACTTCTCATGGTTATTCAATCCCTGGCCTTGGTCTTCCTCAAGACCTCTGCAACACCGAAATCATCAAGAATAGCCGGTCTCATCTGGTGAATCCCGGAGCAAGACAAGAGATCATACCTGCAAGCTCCTTCAATCTGAATACAGAACTCTTGGAACCATGGAAACCGGTTTCTTCATTTAGCCAATTCGTGGAGATTGATTCAGCCATGATGAAACCTCTGCTCATGGATGTTCATGAGACGGCACCAGAATCTCTGATTTTGAGCTTTGGAATCGCTGATAAGTTTGCAAGACAAGAAAAGGTGATGGAGTTTCTTCTGTCTCAGTCAGAGGAGTTCAAGGAAAAAGGATTCGATATGTCGCTGTTAAATGAATTGATGGAGTTTGAGTCTATGAAATCCAGTTCTCAGCTACGACCGTATGATACTTCCTCTGTTCTTTACTTGAATCAAGAATTAGGGAAACCGGTTTTGGATCTCGTTAGGGATATGATGGAGAATCCAGAGTTCTCTGTGCGATCGAATGGTCATGTTCTGTTCTCTTCAAGTAGCAATCCTGAGTTGAATGATCTACTTTCTATTGCTTCCGAGTTCAATTTGTCAAGGAATTCAACAACAAAATGGAGACAGCTCTCACCGCTTATCCCACACTTTCAGAGGTTTGAAAGTGACGTATTTACACCGGCTAAGCTGAAAGCAGTTACAGTGCTAGCACCTTTGAAGAGTCCTGAGAAAAGCAGGCTCAAGTCACCAAGGAAACACAACACGAAGCGAAAAGCTAAAGAGAGGGACCTATACAAAAGAAATCATCTCCACGCTTACGAGAGCCTTCTCTCTTTAATGATAGGCAATGATCATCGACACAAACACACAACAGTACTCTCTTTACAGAAATCATGTGGAGAGCTCTCAGAGCTTCTGACTCAGTTCTCTATCACTGCTGCTGGAACTGGAATCGCTGTGCTCTTTTCTGTCGTATGTAGCCTTGCTTCAAGGCGTGTACCCTTTTGCGCAAATAAGTTCTTCGACACTGGGCTTGGTTTGAGTTTGGTAATACTGTCATGGGCTGTGAATAGACTCAGGGAGGTGATTGTTCATGTCAATAGGAAAGCGAACAAGCCATGTTCAAGTTTGAAAGATGACGAAATCATAAACAGTGTGGAGAGAAGTATGAAGGAGGTTTACTACAGAGCTGCAACGGTAATCGCGGTGTTTGCGCTTAGGTTTGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

47.19

Weight (kDa)

8.83

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03340 AT4G02920 AT4G02920
fragaria_vesca FvH4_2g24050
malus_domestica MD03G1269800.v1.1 MD11G1290800.v1.1
prunus_persica Prupe.8G245900_v2.0.a1
pyrus_communis pycom03g21510
rosa_chinensis RchiOBHm_Chr6g0291821
rosa_laevigata RLG00000012085
rosa_multiflora Rmu_sc0001043.1_g000015
rosa_roxburghii Rroxscaffold_7G00175720
rosa_rugosa Rorug06G0221600
rosa_samantha Rh6AG334400 Rh6BG341900 Rh6CG347800 Rh6DG334700
rosa_wichuraiana Rw6G028950 Rw6G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1033
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 1 cut(s) 1229
AciI CCGC 2 cut(s) 659, 1229
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 1 cut(s) 628
AfaI GTAC 2 cut(s) 900, 1023
AfiI CCNNNNNNNGG 2 cut(s) 50, 211
AgeI ACCGGT 2 cut(s) 187, 487
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
Alw21I GWGCWC 2 cut(s) 930, 987
Alw26I GTCTC 4 cut(s) 105, 254, 348, 640
AlwI GGATC 1 cut(s) 504
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 962, 1214
ApoI RAATTY 1 cut(s) 628
AsiGI ACCGGT 2 cut(s) 187, 487
AspLEI GCGC 2 cut(s) 1034, 1240
AspS9I GGNCC 1 cut(s) 811
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 5 cut(s) 121, 337, 648, 762, 1120
AsuNHI GCTAGC 1 cut(s) 730
AvaII GGWCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 930
BarI GAAGNNNNNNTAC 4 cut(s) 994, 1026, 1187, 1219
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 2 cut(s) 930, 987
BbvI GCAGC 2 cut(s) 949, 1201
BccI CCATC 3 cut(s) 322, 394, 508
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 2 cut(s) 3, 874
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 4 cut(s) 105, 254, 348, 640
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 1207
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 963, 1215
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 2 cut(s) 964, 1216
BmcAI AGTACT 1 cut(s) 900
Bme1390I CCNGG 2 cut(s) 45, 117
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 3 cut(s) 177, 267, 812
BmrFI CCNGG 2 cut(s) 45, 117
BmrI ACTGGG 1 cut(s) 1062
BmtI GCTAGC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 1241
Bpu1102I GCTNAGC 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 45, 749
BpuMI CCSGG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 4 cut(s) 43, 49, 179, 773
BsaWI WCCGGW 2 cut(s) 187, 487
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 211
Bse118I RCCGGY 4 cut(s) 96, 187, 487, 703
Bse1I ACTGG 3 cut(s) 423, 976, 1057
Bse3DI GCAATG 1 cut(s) 877
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 4 cut(s) 43, 49, 179, 773
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 50, 211
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 7 cut(s) 359, 443, 570, 741, 945, 959, 1114
BseNI ACTGG 3 cut(s) 423, 976, 1057
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 949, 1201
Bsh1236I CGCG 1 cut(s) 1229
Bsh1285I CGRYCG 2 cut(s) 440, 542
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 265
BshTI ACCGGT 2 cut(s) 187, 487
BsiEI CGRYCG 2 cut(s) 440, 542
BsiHKAI GWGCWC 2 cut(s) 930, 987
BsiSI CCGG 5 cut(s) 97, 117, 188, 488, 704
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 50, 211
BsmAI GTCTC 4 cut(s) 105, 254, 348, 640
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 930, 987
Bsp143I GATC 6 cut(s) 3, 132, 496, 539, 589, 874
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 2 cut(s) 659, 1229
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 7 cut(s) 358, 442, 571, 742, 944, 958, 1113
BspFNI CGCG 1 cut(s) 1229
BspHI TCATGA 2 cut(s) 18, 256
BspLI GGNNCC 3 cut(s) 177, 267, 812
BspMI ACCTGC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 4 cut(s) 96, 187, 487, 703
BsrI ACTGG 3 cut(s) 423, 976, 1057
BssAI RCCGGY 4 cut(s) 96, 187, 487, 703
BssECI CCNNGG 4 cut(s) 43, 49, 179, 773
BssMI GATC 6 cut(s) 3, 132, 496, 539, 589, 874
BssT1I CCWWGG 3 cut(s) 49, 179, 773
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 6 cut(s) 441, 727, 898, 1080, 1178, 1222
Bst6I CTCTTC 2 cut(s) 568, 737
BstC8I GCNNGC 3 cut(s) 145, 732, 761
BstDEI CTNAG 9 cut(s) 345, 429, 579, 708, 750, 931, 945, 1100, 1241
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 1229
BstHHI GCGC 2 cut(s) 1034, 1240
BstKTI GATC 6 cut(s) 6, 135, 499, 542, 592, 877
BstMAI GTCTC 4 cut(s) 105, 254, 348, 640
BstMBI GATC 6 cut(s) 3, 132, 496, 539, 589, 874
BstMCI CGRYCG 2 cut(s) 440, 542
BstMWI GCNNNNNNNGC 3 cut(s) 658, 934, 1235
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 1254
BstSCI CCNGG 2 cut(s) 43, 115
BstSFI CTRYAG 1 cut(s) 1207
BstUI CGCG 1 cut(s) 1229
BstV1I GCAGC 2 cut(s) 949, 1201
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 4 cut(s) 732, 957, 1050, 1183
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 145, 732, 761
CciI TCATGA 2 cut(s) 18, 256
CfoI GCGC 2 cut(s) 1034, 1240
Cfr10I RCCGGY 4 cut(s) 96, 187, 487, 703
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 2 cut(s) 899, 1022
CspAI ACCGGT 2 cut(s) 187, 487
CviQI GTAC 2 cut(s) 899, 1022
DdeI CTNAG 9 cut(s) 345, 429, 579, 708, 750, 931, 945, 1100, 1241
DpnI GATC 6 cut(s) 5, 134, 498, 541, 591, 876
DpnII GATC 6 cut(s) 3, 132, 496, 539, 589, 874
Eam1104I CTCTTC 2 cut(s) 568, 737
EarI CTCTTC 2 cut(s) 568, 737
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 3 cut(s) 49, 179, 773
Eco24I GRGCYC 1 cut(s) 930
Eco31I GGTCTC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 928
EcoICRI GAGCTC 1 cut(s) 928
EcoO109I RGGNCCY 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 49, 179, 773
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 3 cut(s) 49, 179, 773
Esp3I CGTCTC 1 cut(s) 254
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 824
FbaI TGATCA 2 cut(s) 3, 874
Fnu4HI GCNGC 2 cut(s) 963, 1215
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 2 cut(s) 963, 1215
FspBI CTAG 1 cut(s) 731
FspI TGCGCA 1 cut(s) 1033
GlaI GCGC 2 cut(s) 1033, 1239
GluI GCNGC 2 cut(s) 963, 1215
HaeIII GGCC 1 cut(s) 48
HapII CCGG 5 cut(s) 97, 117, 188, 488, 704
HhaI GCGC 2 cut(s) 1034, 1240
Hin6I GCGC 2 cut(s) 1032, 1238
HinP1I GCGC 2 cut(s) 1032, 1238
HindIII AAGCTT 1 cut(s) 8
HpaII CCGG 5 cut(s) 97, 117, 188, 488, 704
HphI GGTGA 5 cut(s) 121, 337, 648, 762, 1120
Hpy166II GTNNAC 2 cut(s) 1022, 1204
Hpy188I TCNGA 7 cut(s) 159, 279, 352, 610, 678, 934, 942
Hpy188III TCNNGA 8 cut(s) 19, 62, 88, 257, 473, 524, 578, 749
Hpy8I GTNNAC 2 cut(s) 1022, 1204
HpyAV CCTTC 3 cut(s) 160, 860, 1189
HpyCH4III ACNGT 6 cut(s) 441, 727, 898, 1080, 1178, 1222
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 5 cut(s) 72, 143, 311, 1217, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 658, 934, 1235
HpyF3I CTNAG 9 cut(s) 345, 429, 579, 708, 750, 931, 945, 1100, 1241
HpySE526I ACGT 1 cut(s) 693
HspAI GCGC 2 cut(s) 1032, 1238
Ksp22I TGATCA 2 cut(s) 3, 874
Kzo9I GATC 6 cut(s) 3, 132, 496, 539, 589, 874
LmnI GCTCC 2 cut(s) 119, 152
Lsp1109I GCAGC 2 cut(s) 949, 1201
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 3 cut(s) 689, 721, 768
MalI GATC 6 cut(s) 5, 134, 498, 541, 591, 876
MboI GATC 6 cut(s) 3, 132, 496, 539, 589, 874
MboII GAAGA 6 cut(s) 47, 186, 329, 555, 754, 1036
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 930, 987
MluCI AATT 5 cut(s) 206, 395, 476, 616, 628
MlyI GAGTC 4 cut(s) 419, 754, 937, 1092
MnlI CCTC 9 cut(s) 69, 77, 249, 346, 463, 672, 801, 1099, 1192
MseI TTAA 2 cut(s) 389, 860
MspI CCGG 5 cut(s) 97, 117, 188, 488, 704
MspR9I CCNGG 2 cut(s) 45, 117
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 1229
MwoI GCNNNNNNNGC 3 cut(s) 658, 934, 1235
NciI CCSGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 179
NdeII GATC 6 cut(s) 3, 132, 496, 539, 589, 874
NheI GCTAGC 1 cut(s) 730
NlaIV GGNNCC 3 cut(s) 177, 267, 812
NmuCI GTSAC 2 cut(s) 689, 768
NsbI TGCGCA 1 cut(s) 1033
NspI RCATGY 1 cut(s) 1254
PagI TCATGA 2 cut(s) 18, 256
PfeI GAWTC 8 cut(s) 112, 221, 272, 294, 372, 469, 520, 975
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 115
PinAI ACCGGT 2 cut(s) 187, 487
PkrI GCNGC 2 cut(s) 964, 1216
Ple19I CGATCG 1 cut(s) 542
PleI GAGTC 4 cut(s) 418, 753, 937, 1092
PpsI GAGTC 4 cut(s) 418, 753, 937, 1092
PpuMI RGGWCCY 1 cut(s) 811
Psp124BI GAGCTC 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 177, 267, 812
PspPI GGNCC 1 cut(s) 811
PspPPI RGGWCCY 1 cut(s) 811
PsuI RGATCY 1 cut(s) 496
PvuI CGATCG 1 cut(s) 542
RsaI GTAC 2 cut(s) 900, 1023
RsaNI GTAC 2 cut(s) 899, 1022
SacI GAGCTC 1 cut(s) 930
SaqAI TTAA 2 cut(s) 389, 860
SatI GCNGC 2 cut(s) 963, 1215
Sau3AI GATC 6 cut(s) 3, 132, 496, 539, 589, 874
Sau96I GGNCC 1 cut(s) 811
ScaI AGTACT 1 cut(s) 900
SchI GAGTC 4 cut(s) 419, 754, 937, 1092
ScrFI CCNGG 2 cut(s) 45, 117
SduI GDGCHC 2 cut(s) 930, 987
SfcI CTRYAG 1 cut(s) 1207
SinI GGWCC 1 cut(s) 811
SmlI CTYRAG 2 cut(s) 60, 764
SmoI CTYRAG 2 cut(s) 60, 764
Sse9I AATT 5 cut(s) 206, 395, 476, 616, 628
SsiI CCGC 2 cut(s) 659, 1229
SspMI CTAG 1 cut(s) 731
SstI GAGCTC 1 cut(s) 930
StyD4I CCNGG 2 cut(s) 43, 115
StyI CCWWGG 3 cut(s) 49, 179, 773
TaaI ACNGT 6 cut(s) 441, 727, 898, 1080, 1178, 1222
TaiI ACGT 1 cut(s) 696
TaqI TCGA 4 cut(s) 375, 542, 880, 1047
TasI AATT 5 cut(s) 206, 395, 476, 616, 628
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 8 cut(s) 112, 221, 272, 294, 372, 469, 520, 975
Tru1I TTAA 2 cut(s) 389, 860
Tru9I TTAA 2 cut(s) 389, 860
TscAI CASTG 4 cut(s) 732, 964, 1057, 1183
TseFI GTSAC 2 cut(s) 689, 768
TseI GCWGC 2 cut(s) 962, 1214
Tsp45I GTSAC 2 cut(s) 689, 768
TspDTI ATGAA 8 cut(s) 7, 186, 245, 248, 408, 431, 1106, 1208
TspRI CASTG 4 cut(s) 732, 964, 1057, 1183
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 811
XapI RAATTY 1 cut(s) 628
XceI RCATGY 1 cut(s) 1254
XspI CTAG 1 cut(s) 731
ZrmI AGTACT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.