Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006551

Physical Location & Seq

Genomic Coordinates Reverse (-)

877861 .. 880259

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAGAAAATTGTATAGGAAGCTGGTTTCATTCAGAGACCCATTTGCTAGGGTCAAGAGACATGTTAGTTCACATTCAGGGTTTAGAGCTTTCAGCGACAGAAAATGGTTGTTCCCTTTTCTAGCTAGCTTGATCATGTCCATTACTCTTCTGATTTTGTTAATTTCTGGCCAATTCGACAACTTCTTTGGGGAAGAAGATCAATTACCAGTTGATGTTGTTTCAGAGTCTAATGACTACTTTGTAGAATCAGATTTCAAGCAATCTATGAATTCGACGGCTGATGTTAATCCAGAGCCTCCTAGATTAGCTTATTTAATATCGGGAACAAAAGGCGATAGTCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAGTATGTTCTGCATTTGGATCTTGAGGCTCCACCTCGAGAACGGATGGAGCTGGCCATGTCCGTGAAGACTGATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGGCTCAGTCTAATCTTGTTACTTATAAAGGCCCTACAATGATTGCTTGTACTCTTCAAGCCGTTTCAATCTTGCTAAGAGAAAGCTTACATTGGGATTGGTTTCTTAACCTTAGTGCCTCGGATTATCCTCTAGTAACACAAGATGATTTGTTGTATGTCTTCTCAAATCTGTCTCGGAATGTCAATTTCATCGAGAATATGCAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTATACCTATCGAAGAAATCCGATATCGCTTGGACTACTCAACGGCGATCACTTCCAAATTCTTTCAGGCTATTCACTGGCTCAGCTTGGATAATGTTGACTCGGTCTTTCCTCGAGTACTGCATTTGGGGATGGGATAATTTCCCAAGAACAATACTAATGTACTACACAAATTTCGTATCTTCTCCTGAAGGATACTTCCACACAGTAATCTGCAACAGCAAAGAGTTTATCAACACTGCAATCGGTCACGACCTTCACTACATTGCTTGGGACAGTCCTCCAAAGCAACACCCTAGATCTCTCTCGTTGAAGGATTTTGACAATATGGTCAAGAGCAAAGCTCCATTTGCACGCAAGTTCCACAAAAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACACACCGGTTTGCACCAGGAGGATGGTGTGTCGGGAGTTCAGCTAATGGCAATGATCAGTGCTCTGTGCAAGGTGACGACTCGGTGTTGAAACCAGGACCTGGTTCTGAGAGGTTGCAGGAGCTTGTTCAAACACTTTCCTCTGAAGAATTTAGGCGAAAACAGTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

447

Amino Acids

51.5

Weight (kDa)

8.74

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	14 - 273	9.5e-78	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03520 AT1G03520 AT4G03340 AT4G03340
fragaria_vesca	FvH4_6g44880
malus_domestica	MD09G1092300.v1.1 MD17G1082300.v1.1
prunus_persica	Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1
pyrus_communis	pycom17g08040 pycom17g27370
rosa_chinensis	RchiOBHm_Chr2g0162071 RchiOBHm_Chr3g0466861
rosa_laevigata	RLG00000021320
rosa_multiflora	Rmu_sc0005601.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088330
rosa_rugosa	Rorug02G0494400
rosa_samantha	Rh2AG560600 Rh2BG573900 Rh2CG544200 Rh2DG583900
rosa_wichuraiana	Rw2G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AasI	GACNNNNNNGTC	1 cut(s)	1085
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AclWI	GGATC	4 cut(s)	414, 455, 743, 1124
AcoI	YGGCCR	2 cut(s)	169, 441
AcsI	RAATTY	4 cut(s)	271, 814, 928, 1319
AcuI	CTGAAG	2 cut(s)	966, 1335
AfaI	GTAC	4 cut(s)	374, 547, 875, 920
AfiI	CCNNNNNNNGG	2 cut(s)	478, 1271
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	1176
AgsI	TTSAA	6 cut(s)	259, 554, 564, 1069, 1261, 1301
AjnI	CCWGG	3 cut(s)	1186, 1264, 1270
Alw21I	GWGCWC	1 cut(s)	1235
Alw26I	GTCTC	3 cut(s)	30, 52, 675
AlwI	GGATC	4 cut(s)	414, 455, 743, 1124
AlwNI	CAGNNNCTG	1 cut(s)	1271
Ama87I	CYCGRG	2 cut(s)	423, 869
AoxI	GGCC	3 cut(s)	169, 441, 526
ApeKI	GCWGC	1 cut(s)	700
ApoI	RAATTY	4 cut(s)	271, 814, 928, 1319
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	1176
AspS9I	GGNCC	2 cut(s)	527, 1268
AsuHPI	GGTGA	2 cut(s)	697, 1256
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	423, 869
AvaII	GGWCC	1 cut(s)	1268
BalI	TGGCCA	2 cut(s)	171, 443
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BbsI	GAAGAC	2 cut(s)	461, 649
Bbv12I	GWGCWC	1 cut(s)	1235
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	6 cut(s)	384, 427, 490, 705, 882, 1188
BceAI	ACGGC	3 cut(s)	294, 542, 815
BciT130I	CCWGG	3 cut(s)	1188, 1266, 1272
BciVI	GTATCC	1 cut(s)	944
BclI	TGATCA	2 cut(s)	132, 1225
BcoDI	GTCTC	3 cut(s)	30, 52, 675
BfaI	CTAG	7 cut(s)	48, 122, 126, 303, 381, 629, 1053
BfuI	GTATCC	1 cut(s)	944
BglII	AGATCT	1 cut(s)	1055
BisI	GCNGC	1 cut(s)	701
BlpI	GCTNAGC	1 cut(s)	838
BlsI	GCNGC	1 cut(s)	702
BmcAI	AGTACT	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	1188, 1266, 1272
Bme18I	GGWCC	1 cut(s)	1268
BmeT110I	CYCGRG	2 cut(s)	423, 869
BmgT120I	GGNCC	2 cut(s)	527, 1268
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	3 cut(s)	1188, 1266, 1272
BmtI	GCTAGC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	461, 649
BplI	GAGNNNNNCTC	2 cut(s)	1084, 1116
Bpu1102I	GCTNAGC	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	1149
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	615
BsaWI	WCCGGW	2 cut(s)	707, 1176
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 1271
Bse118I	RCCGGY	1 cut(s)	1176
Bse1I	ACTGG	3 cut(s)	209, 388, 838
Bse3DI	GCAATG	2 cut(s)	1020, 1228
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	1188, 1266, 1272
BseCI	ATCGAT	1 cut(s)	1149
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	6 cut(s)	354, 376, 438, 716, 893, 1199
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	478, 1271
BseMI	GCAATG	2 cut(s)	1020, 1228
BseMII	CTCAG	3 cut(s)	515, 852, 1269
BseNI	ACTGG	3 cut(s)	209, 388, 838
BseXI	GCAGC	1 cut(s)	712
BshFI	GGCC	3 cut(s)	171, 443, 528
BshTI	ACCGGT	1 cut(s)	1176
BshVI	ATCGAT	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	1235
BsiHKCI	CYCGRG	2 cut(s)	423, 869
BsiSI	CCGG	2 cut(s)	708, 1177
BslFI	GGGAC	2 cut(s)	1043, 1179
BslI	CCNNNNNNNGG	2 cut(s)	478, 1271
BsmAI	GTCTC	3 cut(s)	30, 52, 675
BsmFI	GGGAC	2 cut(s)	1043, 1179
BsnI	GGCC	3 cut(s)	171, 443, 528
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	2 cut(s)	423, 869
Bsp1286I	GDGCHC	1 cut(s)	1235
Bsp1720I	GCTNAGC	1 cut(s)	838
BspANI	GGCC	3 cut(s)	171, 443, 528
BspCNI	CTCAG	3 cut(s)	514, 851, 1270
BspDI	ATCGAT	1 cut(s)	1149
BspLI	GGNNCC	1 cut(s)	417
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	4 cut(s)	414, 455, 743, 1124
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	2 cut(s)	1020, 1228
BsrFI	RCCGGY	1 cut(s)	1176
BsrI	ACTGG	3 cut(s)	209, 388, 838
BssAI	RCCGGY	1 cut(s)	1176
BssECI	CCNNGG	1 cut(s)	615
Bst2UI	CCWGG	3 cut(s)	1188, 1266, 1272
Bst4CI	ACNGT	3 cut(s)	964, 1034, 1335
Bst6I	CTCTTC	2 cut(s)	153, 555
BstC8I	GCNNGC	3 cut(s)	127, 441, 1111
BstDEI	CTNAG	5 cut(s)	501, 572, 608, 838, 1278
BstF5I	GGATG	6 cut(s)	354, 376, 438, 716, 893, 1199
BstMAI	GTCTC	3 cut(s)	30, 52, 675
BstMWI	GCNNNNNNNGC	1 cut(s)	1106
BstNI	CCWGG	3 cut(s)	1188, 1266, 1272
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	1186, 1264, 1270
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	2 cut(s)	461, 649
BstX2I	RGATCY	2 cut(s)	406, 1055
BstXI	CCANNNNNNTGG	1 cut(s)	1194
BstYI	RGATCY	2 cut(s)	406, 1055
Bsu15I	ATCGAT	1 cut(s)	1149
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	3 cut(s)	171, 443, 528
BsuTUI	ATCGAT	1 cut(s)	1149
BtsCI	GGATG	6 cut(s)	354, 376, 438, 716, 893, 1199
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	4 cut(s)	831, 993, 1235, 1340
Cac8I	GCNNGC	3 cut(s)	127, 441, 1111
CaiI	CAGNNNCTG	1 cut(s)	1271
Cfr10I	RCCGGY	1 cut(s)	1176
Cfr13I	GGNCC	2 cut(s)	527, 1268
ClaI	ATCGAT	1 cut(s)	1149
CsiI	ACCWGGT	1 cut(s)	1270
Csp6I	GTAC	4 cut(s)	373, 546, 874, 919
CspAI	ACCGGT	1 cut(s)	1176
CviAII	CATG	3 cut(s)	62, 136, 445
CviQI	GTAC	4 cut(s)	373, 546, 874, 919
DdeI	CTNAG	5 cut(s)	501, 572, 608, 838, 1278
DrdI	GACNNNNNNGTC	1 cut(s)	1085
DseDI	GACNNNNNNGTC	1 cut(s)	1085
EaeI	YGGCCR	2 cut(s)	169, 441
Eam1104I	CTCTTC	2 cut(s)	153, 555
EarI	CTCTTC	2 cut(s)	153, 555
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	1268
Eco57I	CTGAAG	2 cut(s)	966, 1335
Eco88I	CYCGRG	2 cut(s)	423, 869
EcoO109I	RGGNCCY	2 cut(s)	527, 1268
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	3 cut(s)	1186, 1264, 1270
EcoRV	GATATC	1 cut(s)	781
FaeI	CATG	3 cut(s)	65, 139, 448
FaqI	GGGAC	2 cut(s)	1043, 1179
FatI	CATG	3 cut(s)	61, 135, 444
FbaI	TGATCA	2 cut(s)	132, 1225
Fnu4HI	GCNGC	1 cut(s)	701
FokI	GGATG	6 cut(s)	361, 363, 445, 723, 900, 1206
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	7 cut(s)	48, 122, 126, 303, 381, 629, 1053
GluI	GCNGC	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	171, 443, 528
HapII	CCGG	2 cut(s)	708, 1177
Hin1II	CATG	3 cut(s)	65, 139, 448
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	5 cut(s)	227, 248, 721, 856, 1250
HpaII	CCGG	2 cut(s)	708, 1177
HphI	GGTGA	2 cut(s)	697, 1256
Hpy166II	GTNNAC	3 cut(s)	71, 373, 855
Hpy8I	GTNNAC	3 cut(s)	71, 373, 855
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	941, 1022, 1063
HpyCH4III	ACNGT	3 cut(s)	964, 1034, 1335
HpyCH4V	TGCA	9 cut(s)	400, 700, 879, 972, 998, 1109, 1184, 1240, 1288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1106
HpyF3I	CTNAG	5 cut(s)	501, 572, 608, 838, 1278
Hsp92II	CATG	3 cut(s)	65, 139, 448
Ksp22I	TGATCA	2 cut(s)	132, 1225
LmnI	GCTCC	4 cut(s)	421, 436, 1105, 1291
Lsp1109I	GCAGC	1 cut(s)	712
MabI	ACCWGGT	1 cut(s)	1270
MaeI	CTAG	7 cut(s)	48, 122, 126, 303, 381, 629, 1053
MaeIII	GTNAC	4 cut(s)	514, 631, 1004, 1244
MboII	GAAGA	9 cut(s)	140, 206, 209, 466, 542, 649, 781, 930, 1328
MflI	RGATCY	2 cut(s)	406, 1055
MhlI	GDGCHC	1 cut(s)	1235
MlsI	TGGCCA	2 cut(s)	171, 443
MluNI	TGGCCA	2 cut(s)	171, 443
MlyI	GAGTC	3 cut(s)	236, 850, 1244
MmeI	TCCRAC	1 cut(s)	488
Mox20I	TGGCCA	2 cut(s)	171, 443
MscI	TGGCCA	2 cut(s)	171, 443
MseI	TTAA	4 cut(s)	161, 288, 317, 603
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	2 cut(s)	171, 443
MspI	CCGG	2 cut(s)	708, 1177
MspR9I	CCNGG	3 cut(s)	1188, 1266, 1272
MvaI	CCWGG	3 cut(s)	1188, 1266, 1272
MwoI	GCNNNNNNNGC	1 cut(s)	1106
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	65, 139, 448
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	1004, 1244
NspI	RCATGY	1 cut(s)	65
PaeR7I	CTCGAG	2 cut(s)	423, 869
PciI	ACATGT	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	248, 721
PflFI	GACNNNGTC	1 cut(s)	859
PflMI	CCANNNNNTGG	1 cut(s)	1271
PinAI	ACCGGT	1 cut(s)	1176
PkrI	GCNGC	1 cut(s)	702
PleI	GAGTC	3 cut(s)	235, 850, 1244
PpsI	GAGTC	3 cut(s)	235, 850, 1244
PpuMI	RGGWCCY	1 cut(s)	1268
PscI	ACATGT	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	1268
Psp6I	CCWGG	3 cut(s)	1186, 1264, 1270
PspGI	CCWGG	3 cut(s)	1186, 1264, 1270
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	527, 1268
PspPPI	RGGWCCY	1 cut(s)	1268
PspXI	VCTCGAGB	1 cut(s)	869
PstNI	CAGNNNCTG	1 cut(s)	1271
PsuI	RGATCY	2 cut(s)	406, 1055
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	4 cut(s)	374, 547, 875, 920
RsaNI	GTAC	4 cut(s)	373, 546, 874, 919
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	161, 288, 317, 603
SatI	GCNGC	1 cut(s)	701
Sau96I	GGNCC	2 cut(s)	527, 1268
ScaI	AGTACT	1 cut(s)	875
SchI	GAGTC	3 cut(s)	236, 850, 1244
ScrFI	CCNGG	3 cut(s)	1188, 1266, 1272
SduI	GDGCHC	1 cut(s)	1235
SexAI	ACCWGGT	1 cut(s)	1270
Sfr274I	CTCGAG	2 cut(s)	423, 869
SinI	GGWCC	1 cut(s)	1268
SlaI	CTCGAG	2 cut(s)	423, 869
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	410, 423, 869
SmoI	CTYRAG	3 cut(s)	410, 423, 869
SspMI	CTAG	7 cut(s)	48, 122, 126, 303, 381, 629, 1053
StyD4I	CCNGG	3 cut(s)	1186, 1264, 1270
TaaI	ACNGT	3 cut(s)	964, 1034, 1335
TaqI	TCGA	7 cut(s)	177, 275, 424, 690, 767, 870, 1149
TaqII	GACCGA	2 cut(s)	849, 992
TatI	WGTACW	3 cut(s)	545, 873, 918
TfiI	GAWTC	2 cut(s)	248, 721
Tru1I	TTAA	4 cut(s)	161, 288, 317, 603
Tru9I	TTAA	4 cut(s)	161, 288, 317, 603
TscAI	CASTG	4 cut(s)	838, 1000, 1235, 1340
TseFI	GTSAC	2 cut(s)	1004, 1244
TseI	GCWGC	1 cut(s)	700
Tsp45I	GTSAC	2 cut(s)	1004, 1244
TspDTI	ATGAA	3 cut(s)	18, 284, 676
TspGWI	ACGGA	4 cut(s)	439, 445, 461, 1183
TspRI	CASTG	4 cut(s)	838, 1000, 1235, 1340
Tth111I	GACNNNGTC	1 cut(s)	859
Van91I	CCANNNNNTGG	1 cut(s)	1271
VpaK11BI	GGWCC	1 cut(s)	1268
XapI	RAATTY	4 cut(s)	271, 814, 928, 1319
XceI	RCATGY	1 cut(s)	65
XhoI	CTCGAG	2 cut(s)	423, 869
XspI	CTAG	7 cut(s)	48, 122, 126, 303, 381, 629, 1053
ZrmI	AGTACT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.