Rh2AG560600

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
79070190 .. 79074477
4288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG560600.1

Sequence Viewer

Length: 1311 bp
ATGAGTATGAGGAAGTATGTGAATCACCATTCTGGAAGGGTTTTTGGTGATAGGGTTTGGGTCCTTCCATTCGTTGCTAGCTTTGTCATATTCATTACCCTCTTTTTCTCGGTCATTTCTGGGCTGTTTACTTTGCCACATAGTAAAGAACAGTTGCCAACCGACATTGTTTCCTTTTCGAAATCTGATGACTCAAGTGGGGGGTATTTTGTTGAGTCTGATTTGAAAAGATCATTGGAACAGAATAGACGTTCGAGAATAGGAGCACCTAGATTGGCGTATCTTATATCAGGTACAAAGGGGGATAGTCATAGAATGATGAGGACTTTGAGTGCTGTATATCATCCAAGAAATCAATATGTTCTGCATTTGGATCTCGAGGCTCCTCCTCGAGAAAGATTGGAACTTGCAAGTTTGGTTAAGGCTGATCCTACATTTAGTGAAGTGGAGAATGTGCGTGTTATGGCTCAATCCAATTTGGTGACATATAAGGGCCCTACTATGATTGCTTGTACCCTGCAAGCGATTTCCATTTTGTTAAAGGAGAGCTCAGAGTGGGATTGGTTTATAAACCTCAGTGCGTCTGATTATCCTCTCATGACACAAGATGATTTGCTTCATTCCTTCTCTAATTTGTCTAGAGATATCAACTTCATCGAAAATATGCAGATTACTGGTTGGAAACTGAATCAAAGAGCAAAGCCAATCATAATTGATCCAGGCCTGTATTTATCAAAAAAATCTGATCTTGCATGGACCACTCAGCGTCGTTCACTTCCTACATCATTCAAGTTGTTCACAGGTTCAGCATGGGTAATGCTAACACGGCCCTTCGTTGAGTACTGTATATGGGGATGGGATAACCTCCCTCGTACAATCCTTATGTACTACACAAATTTTGTTTCTTCTCCAGAAGGCTATTTTCATACTGTGATTTGTAACAATGAGGAATATCGCCACACTGCGATAAGCCATGATCTCCACTACATTGCTTGGGACAGCCCTCCGAAGCAGCATCCAGTCTCATTGTCAATGAAGGACTTTGATAAAATGGTAAAGAGCAATGCTCCTTTTGCACGAAAATTTGCAAAGAATGACCCAGTCTTGGATAAAATAGATAAAGAACTTCTAGGTCGAACAAGCCGGTTTTCTCCCGGAGCATGGTGTATAGGTAGCTCAGAAGGTGGGGCTGACCCGTGTTCTATGCGTGGTAATGATTCAATTTTTAGGCCAGGTCCTGGTGCTGAGAGGTTTCAAGTGTTGCTTCAGACATTGTTGTCTGAAGACTTTAGGAAAAAACAATGTTCATGA

Protein Analysis

436

Amino Acids

49.8

Weight (kDa)

8.86

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 92 - 351 2.5e-78 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 1276
AccB7I CCANNNNNTGG 1 cut(s) 1238
AclWI GGATC 3 cut(s) 381, 422, 710
AcsI RAATTY 2 cut(s) 895, 1082
AcuI CTGAAG 2 cut(s) 1250, 1302
AfaI GTAC 5 cut(s) 295, 514, 842, 874, 887
AfiI CCNNNNNNNGG 3 cut(s) 1105, 1161, 1238
AgsI TTSAA 4 cut(s) 226, 790, 1221, 1256
AjnI CCWGG 3 cut(s) 718, 1231, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 3 cut(s) 81, 549, 1176
AluI AGCT 3 cut(s) 81, 549, 1176
Alw21I GWGCWC 2 cut(s) 268, 551
Alw26I GTCTC 1 cut(s) 1027
AlwI GGATC 3 cut(s) 381, 422, 710
AlwNI CAGNNNCTG 1 cut(s) 1238
Ama87I CYCGRG 2 cut(s) 377, 390
AoxI GGCC 4 cut(s) 493, 721, 827, 1229
ApaI GGGCCC 1 cut(s) 497
ApeKI GCWGC 1 cut(s) 1012
ApoI RAATTY 2 cut(s) 895, 1082
AspS9I GGNCC 6 cut(s) 61, 493, 494, 756, 828, 1235
AsuC2I CCSGG 1 cut(s) 1155
AsuHPI GGTGA 3 cut(s) 17, 59, 493
AsuII TTCGAA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 77
AvaI CYCGRG 2 cut(s) 377, 390
AvaII GGWCC 3 cut(s) 61, 756, 1235
BaeGI GKGCMC 1 cut(s) 497
BanII GRGCYC 2 cut(s) 497, 551
BbsI GAAGAC 1 cut(s) 1290
Bbv12I GWGCWC 2 cut(s) 268, 551
BbvI GCAGC 1 cut(s) 1024
BccI CCATC 1 cut(s) 849
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 3 cut(s) 720, 1233, 1239
BcnI CCSGG 1 cut(s) 1155
BcoDI GTCTC 1 cut(s) 1027
BfaI CTAG 4 cut(s) 78, 270, 639, 1130
BisI GCNGC 1 cut(s) 1013
BlsI GCNGC 1 cut(s) 1014
BmcAI AGTACT 1 cut(s) 842
Bme1390I CCNGG 4 cut(s) 720, 1155, 1233, 1239
Bme18I GGWCC 3 cut(s) 61, 756, 1235
BmeT110I CYCGRG 2 cut(s) 377, 390
BmgT120I GGNCC 6 cut(s) 61, 493, 494, 756, 828, 1235
BmiI GGNNCC 3 cut(s) 62, 384, 495
BmrFI CCNGG 4 cut(s) 720, 1155, 1233, 1239
BmrI ACTGGG 1 cut(s) 1094
BmsI GCATC 1 cut(s) 1024
BmtI GCTAGC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 1094
BpiI GAAGAC 1 cut(s) 1290
BplI GAGNNNNNCTC 2 cut(s) 1051, 1083
BpmI CTGGAG 1 cut(s) 894
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 1155
Bsc4I CCNNNNNNNGG 3 cut(s) 1105, 1161, 1238
Bse118I RCCGGY 1 cut(s) 1143
Bse1I ACTGG 3 cut(s) 679, 1019, 1100
Bse3DI GCAATG 2 cut(s) 987, 1069
BseBI CCWGG 3 cut(s) 720, 1233, 1239
BseGI GGATG 3 cut(s) 343, 860, 1015
BseLI CCNNNNNNNGG 3 cut(s) 1105, 1161, 1238
BseMI GCAATG 2 cut(s) 987, 1069
BseMII CTCAG 5 cut(s) 564, 589, 776, 1191, 1236
BseNI ACTGG 3 cut(s) 679, 1019, 1100
BseRI GAGGAG 2 cut(s) 375, 378
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 1 cut(s) 1024
BshFI GGCC 4 cut(s) 495, 723, 829, 1231
BsiHKAI GWGCWC 2 cut(s) 268, 551
BsiHKCI CYCGRG 2 cut(s) 377, 390
BsiSI CCGG 2 cut(s) 1144, 1155
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 3 cut(s) 1105, 1161, 1238
BsmAI GTCTC 1 cut(s) 1027
BsmFI GGGAC 1 cut(s) 1010
BsnI GGCC 4 cut(s) 495, 723, 829, 1231
BsoBI CYCGRG 2 cut(s) 377, 390
Bsp119I TTCGAA 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 268, 497, 551
Bsp143I GATC 6 cut(s) 230, 373, 427, 715, 745, 976
BspANI GGCC 4 cut(s) 495, 723, 829, 1231
BspCNI CTCAG 5 cut(s) 563, 588, 775, 1190, 1237
BspHI TCATGA 2 cut(s) 597, 1307
BspLI GGNNCC 3 cut(s) 62, 384, 495
BspOI GCTAGC 1 cut(s) 81
BspPI GGATC 3 cut(s) 381, 422, 710
BspT104I TTCGAA 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 987, 1069
BsrFI RCCGGY 1 cut(s) 1143
BsrI ACTGG 3 cut(s) 679, 1019, 1100
BssAI RCCGGY 1 cut(s) 1143
BssMI GATC 6 cut(s) 230, 373, 427, 715, 745, 976
Bst2UI CCWGG 3 cut(s) 720, 1233, 1239
Bst4CI ACNGT 3 cut(s) 153, 845, 931
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 79, 522
BstDEI CTNAG 5 cut(s) 550, 575, 762, 1177, 1245
BstF5I GGATG 3 cut(s) 343, 860, 1015
BstKTI GATC 6 cut(s) 233, 376, 430, 718, 748, 979
BstMAI GTCTC 1 cut(s) 1027
BstMBI GATC 6 cut(s) 230, 373, 427, 715, 745, 976
BstMWI GCNNNNNNNGC 2 cut(s) 826, 1073
BstNI CCWGG 3 cut(s) 720, 1233, 1239
BstSCI CCNGG 4 cut(s) 718, 1153, 1231, 1237
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 1024
BstV2I GAAGAC 1 cut(s) 1290
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 4 cut(s) 495, 723, 829, 1231
BtsCI GGATG 3 cut(s) 343, 860, 1015
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 2 cut(s) 583, 960
Cac8I GCNNGC 2 cut(s) 79, 522
CaiI CAGNNNCTG 1 cut(s) 1238
CciI TCATGA 2 cut(s) 597, 1307
Cfr10I RCCGGY 1 cut(s) 1143
Cfr13I GGNCC 6 cut(s) 61, 493, 494, 756, 828, 1235
CseI GACGC 2 cut(s) 570, 755
Csp6I GTAC 5 cut(s) 294, 513, 841, 873, 886
CviAII CATG 6 cut(s) 598, 753, 810, 974, 1161, 1308
CviQI GTAC 5 cut(s) 294, 513, 841, 873, 886
DdeI CTNAG 5 cut(s) 550, 575, 762, 1177, 1245
DpnI GATC 6 cut(s) 232, 375, 429, 717, 747, 978
DpnII GATC 6 cut(s) 230, 373, 427, 715, 745, 976
DrdI GACNNNNNNGTC 1 cut(s) 1276
DseDI GACNNNNNNGTC 1 cut(s) 1276
Ecl136II GAGCTC 1 cut(s) 549
Eco147I AGGCCT 1 cut(s) 723
Eco24I GRGCYC 2 cut(s) 497, 551
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 3 cut(s) 61, 756, 1235
Eco53kI GAGCTC 1 cut(s) 549
Eco57I CTGAAG 2 cut(s) 1250, 1302
Eco88I CYCGRG 2 cut(s) 377, 390
EcoICRI GAGCTC 1 cut(s) 549
EcoO109I RGGNCCY 4 cut(s) 61, 493, 494, 1235
EcoRII CCWGG 3 cut(s) 718, 1231, 1237
EcoRV GATATC 1 cut(s) 646
EcoT38I GRGCYC 2 cut(s) 497, 551
FaeI CATG 6 cut(s) 601, 756, 813, 977, 1164, 1311
FalI AAGNNNNNCTT 2 cut(s) 1248, 1280
FaqI GGGAC 1 cut(s) 1010
FatI CATG 6 cut(s) 597, 752, 809, 973, 1160, 1307
Fnu4HI GCNGC 1 cut(s) 1013
FokI GGATG 3 cut(s) 330, 867, 1002
FriOI GRGCYC 2 cut(s) 497, 551
Fsp4HI GCNGC 1 cut(s) 1013
FspBI CTAG 4 cut(s) 78, 270, 639, 1130
GluI GCNGC 1 cut(s) 1013
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 4 cut(s) 495, 723, 829, 1231
HapII CCGG 2 cut(s) 1144, 1155
HgaI GACGC 2 cut(s) 570, 755
Hin1II CATG 6 cut(s) 601, 756, 813, 977, 1164, 1311
HinfI GANTC 5 cut(s) 22, 191, 215, 688, 1217
HpaII CCGG 2 cut(s) 1144, 1155
HphI GGTGA 3 cut(s) 17, 59, 493
Hpy166II GTNNAC 3 cut(s) 129, 773, 798
Hpy188I TCNGA 9 cut(s) 187, 220, 553, 586, 745, 1008, 1180, 1269, 1282
Hpy188III TCNNGA 8 cut(s) 33, 255, 377, 392, 598, 639, 911, 1308
Hpy8I GTNNAC 3 cut(s) 129, 773, 798
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 7 cut(s) 30, 74, 634, 841, 908, 1030, 1175
HpyCH4III ACNGT 3 cut(s) 153, 845, 931
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 7 cut(s) 367, 410, 520, 667, 752, 1076, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 826, 1073
HpyF3I CTNAG 5 cut(s) 550, 575, 762, 1177, 1245
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 6 cut(s) 601, 756, 813, 977, 1164, 1311
Kzo9I GATC 6 cut(s) 230, 373, 427, 715, 745, 976
LmnI GCTCC 4 cut(s) 263, 388, 1072, 1157
Lsp1109I GCAGC 1 cut(s) 1024
LweI GCATC 1 cut(s) 1024
MaeI CTAG 4 cut(s) 78, 270, 639, 1130
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 481, 938
MalI GATC 6 cut(s) 232, 375, 429, 717, 747, 978
MboI GATC 6 cut(s) 230, 373, 427, 715, 745, 976
MboII GAAGA 2 cut(s) 897, 1295
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 3 cut(s) 268, 497, 551
MluCI AATT 6 cut(s) 475, 631, 711, 895, 1082, 1221
MlyI GAGTC 2 cut(s) 185, 224
MmeI TCCRAC 1 cut(s) 659
MseI TTAA 2 cut(s) 420, 539
MspI CCGG 2 cut(s) 1144, 1155
MspR9I CCNGG 4 cut(s) 720, 1155, 1233, 1239
MvaI CCWGG 3 cut(s) 720, 1233, 1239
MwoI GCNNNNNNNGC 2 cut(s) 826, 1073
NciI CCSGG 1 cut(s) 1155
NdeII GATC 6 cut(s) 230, 373, 427, 715, 745, 976
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 6 cut(s) 601, 756, 813, 977, 1164, 1311
NlaIV GGNNCC 3 cut(s) 62, 384, 495
NmuCI GTSAC 1 cut(s) 481
NspV TTCGAA 1 cut(s) 179
PaeR7I CTCGAG 2 cut(s) 377, 390
PagI TCATGA 2 cut(s) 597, 1307
PceI AGGCCT 1 cut(s) 723
PfeI GAWTC 3 cut(s) 22, 688, 1217
PflFI GACNNNGTC 1 cut(s) 1100
PflMI CCANNNNNTGG 1 cut(s) 1238
PfoI TCCNGGA 1 cut(s) 1153
PkrI GCNGC 1 cut(s) 1014
PleI GAGTC 2 cut(s) 185, 223
PpsI GAGTC 2 cut(s) 185, 223
PpuMI RGGWCCY 2 cut(s) 61, 1235
PsiI TTATAA 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 551
Psp5II RGGWCCY 2 cut(s) 61, 1235
Psp6I CCWGG 3 cut(s) 718, 1231, 1237
PspGI CCWGG 3 cut(s) 718, 1231, 1237
PspN4I GGNNCC 3 cut(s) 62, 384, 495
PspOMI GGGCCC 1 cut(s) 493
PspPI GGNCC 6 cut(s) 61, 493, 494, 756, 828, 1235
PspPPI RGGWCCY 2 cut(s) 61, 1235
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 1100
RsaI GTAC 5 cut(s) 295, 514, 842, 874, 887
RsaNI GTAC 5 cut(s) 294, 513, 841, 873, 886
SacI GAGCTC 1 cut(s) 551
SaqAI TTAA 2 cut(s) 420, 539
SatI GCNGC 1 cut(s) 1013
Sau3AI GATC 6 cut(s) 230, 373, 427, 715, 745, 976
Sau96I GGNCC 6 cut(s) 61, 493, 494, 756, 828, 1235
ScaI AGTACT 1 cut(s) 842
SchI GAGTC 2 cut(s) 185, 224
ScrFI CCNGG 4 cut(s) 720, 1155, 1233, 1239
SduI GDGCHC 3 cut(s) 268, 497, 551
SfaNI GCATC 1 cut(s) 1024
Sfr274I CTCGAG 2 cut(s) 377, 390
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 3 cut(s) 61, 756, 1235
SlaI CTCGAG 2 cut(s) 377, 390
SmlI CTYRAG 3 cut(s) 193, 377, 390
SmoI CTYRAG 3 cut(s) 193, 377, 390
Sse9I AATT 6 cut(s) 475, 631, 711, 895, 1082, 1221
SseBI AGGCCT 1 cut(s) 723
SspMI CTAG 4 cut(s) 78, 270, 639, 1130
SstI GAGCTC 1 cut(s) 551
StuI AGGCCT 1 cut(s) 723
StyD4I CCNGG 4 cut(s) 718, 1153, 1231, 1237
TaaI ACNGT 3 cut(s) 153, 845, 931
TaiI ACGT 1 cut(s) 253
TaqI TCGA 6 cut(s) 179, 254, 378, 391, 657, 1135
TaqII GACCGA 1 cut(s) 100
TasI AATT 6 cut(s) 475, 631, 711, 895, 1082, 1221
TatI WGTACW 2 cut(s) 840, 885
TfiI GAWTC 3 cut(s) 22, 688, 1217
Tru1I TTAA 2 cut(s) 420, 539
Tru9I TTAA 2 cut(s) 420, 539
TscAI CASTG 2 cut(s) 583, 967
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 1012
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 6 cut(s) 82, 608, 643, 914, 1049, 1296
TspRI CASTG 2 cut(s) 583, 967
Tth111I GACNNNGTC 1 cut(s) 1100
Van91I CCANNNNNTGG 1 cut(s) 1238
VpaK11BI GGWCC 3 cut(s) 61, 756, 1235
XapI RAATTY 2 cut(s) 895, 1082
XbaI TCTAGA 1 cut(s) 638
XhoI CTCGAG 2 cut(s) 377, 390
XspI CTAG 4 cut(s) 78, 270, 639, 1130
ZrmI AGTACT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.