Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006551

Physical Location & Seq

Genomic Coordinates Reverse (-)

34515058 .. 34517136

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATGAGGACTTTGAGTGCTGTATATCATCCGAGAAATCAGTATGTTCTGCATTTGGATCTTGAGGCTCCACCTCGAGAAAGATTGGAACTTGCAAGTTTGGTTAAGGCTGATCCTACATTTAGTGAAGTGGAGAATGTGCGTGTTATGGCTCAATCCAATTTGGTGACGTATAAGGGCCCTACTATGATTGCTTGTACACTGCAAGCAATTTCTATTTTGTTAAAGGAGAGCTCAGAGTGGGATTGGTTTATAAACCTCAGTGCATCGGATTATCCTCTCATGACACAAGATGATTTGCTTCATTCCTTCTCTAATCTGTCTAGAGATATCAACTTCATCGAAAATATGCAGATTACTGGATGGAAACTGAATCAAAGAGCAAAACCAATCATAATTGATCCTGGCCTGTATTTATCAAAAAAATCTGATCTTGCATGGACCACTCAGCGTCGTTCACTTCCTACATCGTTCAAGTTGTTCACAGGTTCAGCTTGGGTTATGGTAACGCGACCGTTCGTTGAGTATTGTATATGGGGATGGGATAACCTCCCTCGAACGATCCTTATGTACTACACAAATTTTGTTTCTTCTCCAGAAGGCTATTTTCATACTGTGATTTGTAACAATGAGGAATATCGCCACACTGCGATAAGCCATGATCTCCACTACATTGCTTGGGACAGCCCTCCGAAGCAGCATCCAAAATCTTTGTCAATGAAGGACTTTGACAATATGGTAAAGAGCAATGCTCCTTTTGCACGAAAATTTCCCAAGAATGACCCAGTCTTGGATAAAATAGATAAAGAACTTCTAGGTCGAACAAGCCGGTTTGCTCCCGGAGCATGGTGTATAGGTAGCTCAGAAGGCGGGGCTGACCCGTGTTCTGTACGTGATAATGATTCCGTTTTTAGGCCAGGTCCTGGTGCTGAGAGGTTTCAAGTGTTGCTTCATACATTGTTGTCTGACGAATTTAGGAAAAAACAGTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

332

Amino Acids

37.96

Weight (kDa)

7.11

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	2 - 246	4e-74	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03520 AT1G03520 AT4G03340 AT4G03340
fragaria_vesca	FvH4_6g44880
malus_domestica	MD09G1092300.v1.1 MD17G1082300.v1.1
prunus_persica	Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1 Prupe.3G232800_v2.0.a1
pyrus_communis	pycom17g08040 pycom17g27370
rosa_chinensis	RchiOBHm_Chr2g0162071 RchiOBHm_Chr3g0466861
rosa_laevigata	RLG00000021320
rosa_multiflora	Rmu_sc0005601.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088330
rosa_rugosa	Rorug02G0494400
rosa_samantha	Rh2AG560600 Rh2BG573900 Rh2CG544200 Rh2DG583900
rosa_wichuraiana	Rw2G046430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccII	CGCG	1 cut(s)	511
AciI	CCGC	1 cut(s)	870
AclWI	GGATC	4 cut(s)	66, 107, 395, 556
AcsI	RAATTY	3 cut(s)	580, 767, 971
AfaI	GTAC	3 cut(s)	199, 572, 891
AfiI	CCNNNNNNNGG	4 cut(s)	790, 846, 912, 923
AgsI	TTSAA	2 cut(s)	475, 941
AjnI	CCWGG	3 cut(s)	403, 916, 922
AluBI	AGCT	3 cut(s)	234, 494, 861
AluI	AGCT	3 cut(s)	234, 494, 861
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	66, 107, 395, 556
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	3 cut(s)	178, 406, 914
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	3 cut(s)	580, 767, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspS9I	GGNCC	4 cut(s)	178, 179, 441, 920
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	441, 920
BaeGI	GKGCMC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	182, 236
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	2 cut(s)	357, 534
BciT130I	CCWGG	3 cut(s)	405, 918, 924
BcnI	CCSGG	1 cut(s)	840
BfaI	CTAG	2 cut(s)	324, 815
BisI	GCNGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	4 cut(s)	405, 840, 918, 924
Bme18I	GGWCC	2 cut(s)	441, 920
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	4 cut(s)	178, 179, 441, 920
BmiI	GGNNCC	2 cut(s)	69, 180
BmrFI	CCNGG	4 cut(s)	405, 840, 918, 924
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	275, 709
BmuI	ACTGGG	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	893
Bsc4I	CCNNNNNNNGG	4 cut(s)	790, 846, 912, 923
Bse118I	RCCGGY	1 cut(s)	828
Bse1I	ACTGG	2 cut(s)	364, 785
Bse3DI	GCAATG	2 cut(s)	672, 754
BseBI	CCWGG	3 cut(s)	405, 918, 924
BseGI	GGATG	4 cut(s)	28, 368, 545, 700
BseLI	CCNNNNNNNGG	4 cut(s)	790, 846, 912, 923
BseMI	GCAATG	2 cut(s)	672, 754
BseMII	CTCAG	5 cut(s)	249, 274, 461, 876, 921
BseNI	ACTGG	2 cut(s)	364, 785
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	511
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	3 cut(s)	180, 408, 916
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	829, 840
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	790, 846, 912, 923
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	180, 408, 916
BsoBI	CYCGRG	1 cut(s)	75
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	182, 236
Bsp1407I	TGTACA	1 cut(s)	197
Bsp143I	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
BspACI	CCGC	1 cut(s)	870
BspANI	GGCC	3 cut(s)	180, 408, 916
BspCNI	CTCAG	5 cut(s)	248, 273, 460, 875, 922
BspFNI	CGCG	1 cut(s)	511
BspHI	TCATGA	2 cut(s)	282, 992
BspLI	GGNNCC	2 cut(s)	69, 180
BspPI	GGATC	4 cut(s)	66, 107, 395, 556
BsrDI	GCAATG	2 cut(s)	672, 754
BsrFI	RCCGGY	1 cut(s)	828
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	364, 785
BssAI	RCCGGY	1 cut(s)	828
BssMI	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
Bst2UI	CCWGG	3 cut(s)	405, 918, 924
Bst4CI	ACNGT	3 cut(s)	516, 616, 987
BstAUI	TGTACA	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	893
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	5 cut(s)	235, 260, 447, 862, 930
BstF5I	GGATG	4 cut(s)	28, 368, 545, 700
BstFNI	CGCG	1 cut(s)	511
BstKTI	GATC	6 cut(s)	61, 115, 403, 433, 564, 664
BstMBI	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	3 cut(s)	758, 842, 867
BstNI	CCWGG	3 cut(s)	405, 918, 924
BstSCI	CCNGG	4 cut(s)	403, 838, 916, 922
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	709
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	180, 408, 916
BtsCI	GGATG	4 cut(s)	28, 368, 545, 700
BtsI	GCAGTG	2 cut(s)	200, 645
BtsIMutI	CAGTG	4 cut(s)	200, 268, 645, 992
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	2 cut(s)	282, 992
Cfr10I	RCCGGY	1 cut(s)	828
Cfr13I	GGNCC	4 cut(s)	178, 179, 441, 920
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	198, 571, 890
CviAII	CATG	5 cut(s)	283, 438, 659, 846, 993
CviQI	GTAC	3 cut(s)	198, 571, 890
DdeI	CTNAG	5 cut(s)	235, 260, 447, 862, 930
DpnI	GATC	6 cut(s)	60, 114, 402, 432, 563, 663
DpnII	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	182, 236
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	441, 920
Eco53kI	GAGCTC	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	3 cut(s)	178, 179, 920
EcoRII	CCWGG	3 cut(s)	403, 916, 922
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	182, 236
FaeI	CATG	5 cut(s)	286, 441, 662, 849, 996
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	5 cut(s)	282, 437, 658, 845, 992
FauI	CCCGC	1 cut(s)	863
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	4 cut(s)	15, 375, 552, 687
FriOI	GRGCYC	2 cut(s)	182, 236
Fsp4HI	GCNGC	1 cut(s)	698
FspBI	CTAG	2 cut(s)	324, 815
GluI	GCNGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	180, 408, 916
HapII	CCGG	2 cut(s)	829, 840
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	286, 441, 662, 849, 996
HinfI	GANTC	2 cut(s)	373, 902
HpaII	CCGG	2 cut(s)	829, 840
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	200, 458, 483
Hpy188I	TCNGA	7 cut(s)	33, 238, 271, 430, 693, 865, 967
Hpy188III	TCNNGA	6 cut(s)	62, 77, 283, 324, 596, 993
Hpy8I	GTNNAC	3 cut(s)	200, 458, 483
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	4 cut(s)	319, 593, 715, 860
HpyCH4III	ACNGT	3 cut(s)	516, 616, 987
HpyCH4IV	ACGT	2 cut(s)	170, 892
HpyCH4V	TGCA	7 cut(s)	52, 95, 205, 266, 352, 437, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	758, 842, 867
HpyF3I	CTNAG	5 cut(s)	235, 260, 447, 862, 930
HpySE526I	ACGT	2 cut(s)	170, 892
Hsp92II	CATG	5 cut(s)	286, 441, 662, 849, 996
Kzo9I	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
LmnI	GCTCC	4 cut(s)	73, 757, 841, 842
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	2 cut(s)	275, 709
MaeI	CTAG	2 cut(s)	324, 815
MaeII	ACGT	2 cut(s)	170, 892
MaeIII	GTNAC	3 cut(s)	166, 505, 623
MalI	GATC	6 cut(s)	60, 114, 402, 432, 563, 663
MboI	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
MboII	GAAGA	1 cut(s)	582
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	182, 236
MluCI	AATT	6 cut(s)	160, 210, 396, 580, 767, 971
MnlI	CCTC	9 cut(s)	58, 84, 269, 288, 560, 564, 625, 699, 927
MseI	TTAA	2 cut(s)	105, 224
MspI	CCGG	2 cut(s)	829, 840
MspR9I	CCNGG	4 cut(s)	405, 840, 918, 924
MvaI	CCWGG	3 cut(s)	405, 918, 924
MvnI	CGCG	1 cut(s)	511
MwoI	GCNNNNNNNGC	3 cut(s)	758, 842, 867
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
NlaIII	CATG	5 cut(s)	286, 441, 662, 849, 996
NlaIV	GGNNCC	2 cut(s)	69, 180
NmuCI	GTSAC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	2 cut(s)	282, 992
PfeI	GAWTC	2 cut(s)	373, 902
PflFI	GACNNNGTC	1 cut(s)	785
PflMI	CCANNNNNTGG	1 cut(s)	923
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	1 cut(s)	699
Ppu21I	YACGTR	1 cut(s)	893
PpuMI	RGGWCCY	1 cut(s)	920
PsiI	TTATAA	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	3 cut(s)	403, 916, 922
PspGI	CCWGG	3 cut(s)	403, 916, 922
PspN4I	GGNNCC	2 cut(s)	69, 180
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	4 cut(s)	178, 179, 441, 920
PspPPI	RGGWCCY	1 cut(s)	920
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	785
RsaI	GTAC	3 cut(s)	199, 572, 891
RsaNI	GTAC	3 cut(s)	198, 571, 890
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	105, 224
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	6 cut(s)	58, 112, 400, 430, 561, 661
Sau96I	GGNCC	4 cut(s)	178, 179, 441, 920
ScrFI	CCNGG	4 cut(s)	405, 840, 918, 924
SduI	GDGCHC	2 cut(s)	182, 236
SfaNI	GCATC	2 cut(s)	275, 709
Sfr274I	CTCGAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	441, 920
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	62, 75
SmoI	CTYRAG	2 cut(s)	62, 75
Sse9I	AATT	6 cut(s)	160, 210, 396, 580, 767, 971
SsiI	CCGC	1 cut(s)	870
SspMI	CTAG	2 cut(s)	324, 815
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	403, 838, 916, 922
TaaI	ACNGT	3 cut(s)	516, 616, 987
TaiI	ACGT	2 cut(s)	173, 895
TaqI	TCGA	4 cut(s)	76, 342, 556, 820
TasI	AATT	6 cut(s)	160, 210, 396, 580, 767, 971
TatI	WGTACW	2 cut(s)	197, 570
TfiI	GAWTC	2 cut(s)	373, 902
Tru1I	TTAA	2 cut(s)	105, 224
Tru9I	TTAA	2 cut(s)	105, 224
TscAI	CASTG	4 cut(s)	207, 268, 652, 992
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	697
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	6 cut(s)	293, 328, 599, 734, 941, 981
TspGWI	ACGGA	1 cut(s)	895
TspRI	CASTG	4 cut(s)	207, 268, 652, 992
Tth111I	GACNNNGTC	1 cut(s)	785
Van91I	CCANNNNNTGG	1 cut(s)	923
VpaK11BI	GGWCC	2 cut(s)	441, 920
XapI	RAATTY	3 cut(s)	580, 767, 971
XbaI	TCTAGA	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	2 cut(s)	324, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.