RLG00000021320

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
74113355 .. 74115789
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021320

Sequence Viewer

Length: 1302 bp
ATGAGGAAGTACGTGAATCACCATTCTGGAAGGGTTTTCGGTGATAGGGTTTGGGTCCTTCCATTCATTGCTAGCTTTGTCATATTCATTACCCTCTTTTTCTCAGTCATTTCTGGGCTGTTTACTTTGCCGCATGGTAAAGAACAGTTGCCAACCGACATTGGTTCCTTTTTGAAATCCGATGACTCAACTGGGTATTTTGTTGAGTCTGATTTGAAAAGATCATTGGAACAGAATAGACGTTTGAGAACAGGAGCACCTAGATTGGCGTATCTTATATCAGGTACAAAGGGGGATAGTCATAGAATGATGAGGACTTTGAGTGCTGTATATCATCCAAGAAATCAATATGTTCTGCATTTGGATCTCGAGGCTCCTCCTCGAGAAAGATTGGAACTTGCAAGTTTGGTTAAGGCTGATCCTACATTTAGTGAAGTGGAGAATGTGCGTGTTATGGCTCAATCCAATTTGGTGACGTATAAGGGCCCTACTATGATTGCTTGTACCCTGCAAGCGATTTCCATTTTGTTAAAGGAGAGCTCAGAGTGGGATTGGTTTATAAACCTCAGTGCGTCTGATTATCCTCTCATGACACAAGATGATTTGCTTCATTCCTTCTCTAATTTGTCTAGAGATATCAACTTCATCGAAAATATGCAGATTACTGGTTGGAAACTGAATCAAAGAGCAAAACCAATCATAATTGATCCAGGCCTGTATTTATCAAAAAAATCTGATCTTGCATGGACCACTCAGCGTCGTTCACTTCCTACATCATTCAAGTTGTTCACAGGTTCAGCATGGGTAATGCTAACACGGCCCTTCGTTGAGTACTGTATATGGGGATGGGATAACTTCCCTCGTACGATCCTTATGTACTATACGAATTTTGTTTCTTCTCCAGAAGGCTATTTTCATACTGTGATTTGTAACAATGAGGAATATCGCCACACTGCAATAAGCCATGATCTCCACTACATTGCTTGGGACAGCCCTCCGAAGCAGCATCCAGTCTCATTGTCAATGAAGGACTTTGATAAAATGGTAAAGAGCAATGCTCCTTTTGCACGAAAATTTGCAAAGAATGACCCAGTCTTGGATAAAATAGATAAAGAACTTCTAGGTCGAACAAGCCGGTTTTCTCCCGGAGCGTGGTGTATAGGTAGCTCAGAAGGCGGGGCTGACCCGTGTTCTATACGTGGTAATGATTCAATTTTTAGGCCAGGTCCTGGTGCTGAGAGGTTTCAAGTGTTGCTTCAGACATTGTTGTCTGAAGACTTTAGGAAAAAGCAATGTTCATGA

Protein Analysis

434

Amino Acids

49.53

Weight (kDa)

8.86

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 89 - 348 4.1e-78 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AasI GACNNNNNNGTC 1 cut(s) 1267
AccB7I CCANNNNNTGG 1 cut(s) 1229
AciI CCGC 2 cut(s) 131, 1176
AclWI GGATC 4 cut(s) 372, 413, 701, 862
AcsI RAATTY 2 cut(s) 886, 1073
AcuI CTGAAG 2 cut(s) 1241, 1293
AfaI GTAC 6 cut(s) 11, 286, 505, 833, 865, 878
AfiI CCNNNNNNNGG 3 cut(s) 1096, 1152, 1229
AgsI TTSAA 5 cut(s) 175, 217, 781, 1212, 1247
AjnI CCWGG 3 cut(s) 709, 1222, 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 75, 540, 1167
AluI AGCT 3 cut(s) 75, 540, 1167
Alw21I GWGCWC 2 cut(s) 259, 542
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 4 cut(s) 372, 413, 701, 862
AlwNI CAGNNNCTG 1 cut(s) 1229
Ama87I CYCGRG 2 cut(s) 368, 381
AoxI GGCC 4 cut(s) 484, 712, 818, 1220
ApaI GGGCCC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 1003
ApoI RAATTY 2 cut(s) 886, 1073
AspS9I GGNCC 6 cut(s) 55, 484, 485, 747, 819, 1226
AsuC2I CCSGG 1 cut(s) 1146
AsuHPI GGTGA 3 cut(s) 11, 53, 484
AsuNHI GCTAGC 1 cut(s) 71
AvaI CYCGRG 2 cut(s) 368, 381
AvaII GGWCC 3 cut(s) 55, 747, 1226
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 2 cut(s) 488, 542
BbsI GAAGAC 1 cut(s) 1281
Bbv12I GWGCWC 2 cut(s) 259, 542
BbvI GCAGC 1 cut(s) 1015
BccI CCATC 1 cut(s) 840
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 3 cut(s) 711, 1224, 1230
BcnI CCSGG 1 cut(s) 1146
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 4 cut(s) 72, 261, 630, 1121
BisI GCNGC 2 cut(s) 131, 1004
BlsI GCNGC 2 cut(s) 132, 1005
BmcAI AGTACT 1 cut(s) 833
Bme1390I CCNGG 4 cut(s) 711, 1146, 1224, 1230
Bme18I GGWCC 3 cut(s) 55, 747, 1226
BmeT110I CYCGRG 2 cut(s) 368, 381
BmgT120I GGNCC 6 cut(s) 55, 484, 485, 747, 819, 1226
BmiI GGNNCC 4 cut(s) 56, 166, 375, 486
BmrFI CCNGG 4 cut(s) 711, 1146, 1224, 1230
BmrI ACTGGG 2 cut(s) 201, 1085
BmsI GCATC 1 cut(s) 1015
BmtI GCTAGC 1 cut(s) 75
BmuI ACTGGG 2 cut(s) 201, 1085
BpiI GAAGAC 1 cut(s) 1281
BplI GAGNNNNNCTC 2 cut(s) 1042, 1074
BpmI CTGGAG 1 cut(s) 885
BpuMI CCSGG 1 cut(s) 1146
BsaAI YACGTR 2 cut(s) 13, 1199
Bsc4I CCNNNNNNNGG 3 cut(s) 1096, 1152, 1229
Bse118I RCCGGY 1 cut(s) 1134
Bse1I ACTGG 4 cut(s) 196, 670, 1010, 1091
Bse3DI GCAATG 4 cut(s) 66, 978, 1060, 1298
BseBI CCWGG 3 cut(s) 711, 1224, 1230
BseGI GGATG 3 cut(s) 334, 851, 1006
BseLI CCNNNNNNNGG 3 cut(s) 1096, 1152, 1229
BseMI GCAATG 4 cut(s) 66, 978, 1060, 1298
BseMII CTCAG 6 cut(s) 117, 555, 580, 767, 1182, 1227
BseNI ACTGG 4 cut(s) 196, 670, 1010, 1091
BseRI GAGGAG 2 cut(s) 366, 369
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 1 cut(s) 1015
BshFI GGCC 4 cut(s) 486, 714, 820, 1222
BsiHKAI GWGCWC 2 cut(s) 259, 542
BsiHKCI CYCGRG 2 cut(s) 368, 381
BsiSI CCGG 2 cut(s) 1135, 1146
BsiWI CGTACG 1 cut(s) 863
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 3 cut(s) 1096, 1152, 1229
BsmAI GTCTC 1 cut(s) 1018
BsmFI GGGAC 1 cut(s) 1001
BsnI GGCC 4 cut(s) 486, 714, 820, 1222
BsoBI CYCGRG 2 cut(s) 368, 381
Bsp120I GGGCCC 1 cut(s) 484
Bsp1286I GDGCHC 3 cut(s) 259, 488, 542
Bsp143I GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
BspACI CCGC 2 cut(s) 131, 1176
BspANI GGCC 4 cut(s) 486, 714, 820, 1222
BspCNI CTCAG 6 cut(s) 116, 554, 579, 766, 1181, 1228
BspHI TCATGA 2 cut(s) 588, 1298
BspLI GGNNCC 4 cut(s) 56, 166, 375, 486
BspOI GCTAGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 372, 413, 701, 862
BsrDI GCAATG 4 cut(s) 66, 978, 1060, 1298
BsrFI RCCGGY 1 cut(s) 1134
BsrI ACTGG 4 cut(s) 196, 670, 1010, 1091
BssAI RCCGGY 1 cut(s) 1134
BssMI GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
Bst2UI CCWGG 3 cut(s) 711, 1224, 1230
Bst4CI ACNGT 3 cut(s) 147, 836, 922
BstBAI YACGTR 2 cut(s) 13, 1199
BstC8I GCNNGC 2 cut(s) 73, 513
BstDEI CTNAG 6 cut(s) 103, 541, 566, 753, 1168, 1236
BstF5I GGATG 3 cut(s) 334, 851, 1006
BstKTI GATC 7 cut(s) 224, 367, 421, 709, 739, 870, 970
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
BstMWI GCNNNNNNNGC 3 cut(s) 817, 1064, 1173
BstNI CCWGG 3 cut(s) 711, 1224, 1230
BstSCI CCNGG 4 cut(s) 709, 1144, 1222, 1228
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 1015
BstV2I GAAGAC 1 cut(s) 1281
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 4 cut(s) 486, 714, 820, 1222
BtsCI GGATG 3 cut(s) 334, 851, 1006
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 2 cut(s) 574, 951
Cac8I GCNNGC 2 cut(s) 73, 513
CaiI CAGNNNCTG 1 cut(s) 1229
CciI TCATGA 2 cut(s) 588, 1298
Cfr10I RCCGGY 1 cut(s) 1134
Cfr13I GGNCC 6 cut(s) 55, 484, 485, 747, 819, 1226
CseI GACGC 2 cut(s) 561, 746
Csp6I GTAC 6 cut(s) 10, 285, 504, 832, 864, 877
CviAII CATG 6 cut(s) 134, 589, 744, 801, 965, 1299
CviQI GTAC 6 cut(s) 10, 285, 504, 832, 864, 877
DdeI CTNAG 6 cut(s) 103, 541, 566, 753, 1168, 1236
DpnI GATC 7 cut(s) 223, 366, 420, 708, 738, 869, 969
DpnII GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
DrdI GACNNNNNNGTC 1 cut(s) 1267
DseDI GACNNNNNNGTC 1 cut(s) 1267
Ecl136II GAGCTC 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 488, 542
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 55, 747, 1226
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 1241, 1293
Eco88I CYCGRG 2 cut(s) 368, 381
EcoICRI GAGCTC 1 cut(s) 540
EcoO109I RGGNCCY 4 cut(s) 55, 484, 485, 1226
EcoRII CCWGG 3 cut(s) 709, 1222, 1228
EcoRV GATATC 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 488, 542
FaeI CATG 6 cut(s) 137, 592, 747, 804, 968, 1302
FalI AAGNNNNNCTT 2 cut(s) 1239, 1271
FaqI GGGAC 1 cut(s) 1001
FatI CATG 6 cut(s) 133, 588, 743, 800, 964, 1298
FauI CCCGC 1 cut(s) 1169
Fnu4HI GCNGC 2 cut(s) 131, 1004
FokI GGATG 3 cut(s) 321, 858, 993
FriOI GRGCYC 2 cut(s) 488, 542
Fsp4HI GCNGC 2 cut(s) 131, 1004
FspBI CTAG 4 cut(s) 72, 261, 630, 1121
GluI GCNGC 2 cut(s) 131, 1004
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 4 cut(s) 486, 714, 820, 1222
HapII CCGG 2 cut(s) 1135, 1146
HgaI GACGC 2 cut(s) 561, 746
Hin1II CATG 6 cut(s) 137, 592, 747, 804, 968, 1302
HinfI GANTC 5 cut(s) 16, 185, 206, 679, 1208
HpaII CCGG 2 cut(s) 1135, 1146
HphI GGTGA 3 cut(s) 11, 53, 484
Hpy166II GTNNAC 3 cut(s) 123, 764, 789
Hpy188I TCNGA 9 cut(s) 181, 211, 544, 577, 736, 999, 1171, 1260, 1273
Hpy188III TCNNGA 7 cut(s) 27, 368, 383, 589, 630, 902, 1299
Hpy8I GTNNAC 3 cut(s) 123, 764, 789
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 7 cut(s) 24, 68, 625, 832, 899, 1021, 1166
HpyCH4III ACNGT 3 cut(s) 147, 836, 922
HpyCH4IV ACGT 4 cut(s) 12, 241, 476, 1198
HpyCH4V TGCA 8 cut(s) 358, 401, 511, 658, 743, 956, 1067, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 817, 1064, 1173
HpyF3I CTNAG 6 cut(s) 103, 541, 566, 753, 1168, 1236
HpySE526I ACGT 4 cut(s) 12, 241, 476, 1198
Hsp92II CATG 6 cut(s) 137, 592, 747, 804, 968, 1302
Kzo9I GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
LmnI GCTCC 4 cut(s) 254, 379, 1063, 1148
Lsp1109I GCAGC 1 cut(s) 1015
LweI GCATC 1 cut(s) 1015
MaeI CTAG 4 cut(s) 72, 261, 630, 1121
MaeII ACGT 4 cut(s) 12, 241, 476, 1198
MaeIII GTNAC 2 cut(s) 472, 929
MalI GATC 7 cut(s) 223, 366, 420, 708, 738, 869, 969
MboI GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
MboII GAAGA 2 cut(s) 888, 1286
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 3 cut(s) 259, 488, 542
MluCI AATT 6 cut(s) 466, 622, 702, 886, 1073, 1212
MlyI GAGTC 2 cut(s) 179, 215
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 2 cut(s) 411, 530
MspI CCGG 2 cut(s) 1135, 1146
MspR9I CCNGG 4 cut(s) 711, 1146, 1224, 1230
MvaI CCWGG 3 cut(s) 711, 1224, 1230
MwoI GCNNNNNNNGC 3 cut(s) 817, 1064, 1173
NciI CCSGG 1 cut(s) 1146
NdeII GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 6 cut(s) 137, 592, 747, 804, 968, 1302
NlaIV GGNNCC 4 cut(s) 56, 166, 375, 486
NmuCI GTSAC 1 cut(s) 472
PaeR7I CTCGAG 2 cut(s) 368, 381
PagI TCATGA 2 cut(s) 588, 1298
PceI AGGCCT 1 cut(s) 714
PfeI GAWTC 3 cut(s) 16, 679, 1208
Pfl23II CGTACG 1 cut(s) 863
PflFI GACNNNGTC 1 cut(s) 1091
PflMI CCANNNNNTGG 1 cut(s) 1229
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 2 cut(s) 132, 1005
PleI GAGTC 2 cut(s) 179, 214
PpsI GAGTC 2 cut(s) 179, 214
Ppu21I YACGTR 2 cut(s) 13, 1199
PpuMI RGGWCCY 2 cut(s) 55, 1226
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 542
Psp5II RGGWCCY 2 cut(s) 55, 1226
Psp6I CCWGG 3 cut(s) 709, 1222, 1228
PspGI CCWGG 3 cut(s) 709, 1222, 1228
PspLI CGTACG 1 cut(s) 863
PspN4I GGNNCC 4 cut(s) 56, 166, 375, 486
PspOMI GGGCCC 1 cut(s) 484
PspPI GGNCC 6 cut(s) 55, 484, 485, 747, 819, 1226
PspPPI RGGWCCY 2 cut(s) 55, 1226
PstNI CAGNNNCTG 1 cut(s) 1229
PsuI RGATCY 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 1091
RsaI GTAC 6 cut(s) 11, 286, 505, 833, 865, 878
RsaNI GTAC 6 cut(s) 10, 285, 504, 832, 864, 877
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 411, 530
SatI GCNGC 2 cut(s) 131, 1004
Sau3AI GATC 7 cut(s) 221, 364, 418, 706, 736, 867, 967
Sau96I GGNCC 6 cut(s) 55, 484, 485, 747, 819, 1226
ScaI AGTACT 1 cut(s) 833
SchI GAGTC 2 cut(s) 179, 215
ScrFI CCNGG 4 cut(s) 711, 1146, 1224, 1230
SduI GDGCHC 3 cut(s) 259, 488, 542
SfaNI GCATC 1 cut(s) 1015
Sfr274I CTCGAG 2 cut(s) 368, 381
SinI GGWCC 3 cut(s) 55, 747, 1226
SlaI CTCGAG 2 cut(s) 368, 381
SmlI CTYRAG 2 cut(s) 368, 381
SmoI CTYRAG 2 cut(s) 368, 381
Sse9I AATT 6 cut(s) 466, 622, 702, 886, 1073, 1212
SseBI AGGCCT 1 cut(s) 714
SsiI CCGC 2 cut(s) 131, 1176
SspMI CTAG 4 cut(s) 72, 261, 630, 1121
SstI GAGCTC 1 cut(s) 542
StuI AGGCCT 1 cut(s) 714
StyD4I CCNGG 4 cut(s) 709, 1144, 1222, 1228
TaaI ACNGT 3 cut(s) 147, 836, 922
TaiI ACGT 4 cut(s) 15, 244, 479, 1201
TaqI TCGA 4 cut(s) 369, 382, 648, 1126
TasI AATT 6 cut(s) 466, 622, 702, 886, 1073, 1212
TatI WGTACW 2 cut(s) 831, 876
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 3 cut(s) 16, 679, 1208
Tru1I TTAA 2 cut(s) 411, 530
Tru9I TTAA 2 cut(s) 411, 530
TscAI CASTG 2 cut(s) 574, 958
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 1003
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 7 cut(s) 55, 76, 599, 634, 905, 1040, 1287
TspRI CASTG 2 cut(s) 574, 958
Tth111I GACNNNGTC 1 cut(s) 1091
Van91I CCANNNNNTGG 1 cut(s) 1229
VpaK11BI GGWCC 3 cut(s) 55, 747, 1226
XapI RAATTY 2 cut(s) 886, 1073
XbaI TCTAGA 1 cut(s) 629
XhoI CTCGAG 2 cut(s) 368, 381
XspI CTAG 4 cut(s) 72, 261, 630, 1121
ZrmI AGTACT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.