Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010947

Physical Location & Seq

Genomic Coordinates Reverse (-)

930715 .. 931985

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATGGATCCAACAGGATCGCCAAGAACATCGAATGGCTCTCCTCCAAGATCGTACCTTATCTTTATGCGAATCATGAGCAAGAGACGGACATGGGTTTGTCTCTTTGTAGCTGTCTACGCGATTCTCCTGGCTTCCTCATGGAACTTTCTCACATCTGTGCTTAGCTGGTACAAGCTCCAGTACACGTCATCGCCGTCTCCGTCAAGATTACCGGCGGTTTACGCGTCTGTGGTGTTAGGAGCTGTGTTTGGAGCCATGTCGATGGTTGCGGCGGCTGCGGTTGCGGTTCCGGCGGTTATGGTGATCTGGATATCGGTGGTTGTGTTGCTTGCGTTTTTTGGGAAATCGAGAAGGGTATTGGTTGTTGAAGCTCGTAAGATTACAAGAGAAGTGTTTGGATTTGTGTTTAAGGTTCTTTTGAAAGAAGGCAATGCTGTTGCTGCGGTTTGTGCTGTTTTGGGTTATTTCATTCTTATTAGAAAGGATTTTGATTCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.37

Weight (kDa)

10.33

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03730 AT4G03600
fragaria_vesca	FvH4_6g26280 FvH4_6g26280
malus_domestica	MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica	Prupe.3G132300_v2.0.a1
pyrus_communis	pycom09g16410
rosa_chinensis	RchiOBHm_Chr2g0126711
rosa_laevigata	RLG00000018916
rosa_multiflora	Rmu_sc0002369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117040
rosa_rugosa	Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha	Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana	Rw2G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	122, 227
AciI	CCGC	7 cut(s)	218, 272, 275, 281, 287, 296, 446
AclWI	GGATC	3 cut(s)	2, 15, 25
AfaI	GTAC	3 cut(s)	56, 173, 185
AflIII	ACRYGT	2 cut(s)	186, 225
AgsI	TTSAA	2 cut(s)	371, 424
AjiI	CACGTC	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	129
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	113, 168, 178, 245, 374
AluI	AGCT	5 cut(s)	113, 168, 178, 245, 374
Alw26I	GTCTC	3 cut(s)	79, 107, 204
AlwI	GGATC	3 cut(s)	2, 15, 25
ApeKI	GCWGC	2 cut(s)	278, 443
AsuHPI	GGTGA	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	265, 430
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	79, 107, 204
BisI	GCNGC	4 cut(s)	273, 276, 279, 444
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	4 cut(s)	274, 277, 280, 445
Bme1390I	CCNGG	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	189
BmiI	GGNNCC	3 cut(s)	9, 256, 291
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	265, 430
Bsh1236I	CGCG	2 cut(s)	122, 227
BsiSI	CCGG	2 cut(s)	215, 293
BsmAI	GTCTC	3 cut(s)	79, 107, 204
BsmBI	CGTCTC	2 cut(s)	79, 204
Bsp143I	GATC	4 cut(s)	7, 17, 50, 306
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	7 cut(s)	218, 272, 275, 281, 287, 296, 446
BspFNI	CGCG	2 cut(s)	122, 227
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	9, 256, 291
BspPI	GGATC	3 cut(s)	2, 15, 25
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	214
BssMI	GATC	4 cut(s)	7, 17, 50, 306
Bst2UI	CCWGG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	122, 227
BstKTI	GATC	4 cut(s)	10, 20, 53, 309
BstMAI	GTCTC	3 cut(s)	79, 107, 204
BstMBI	GATC	4 cut(s)	7, 17, 50, 306
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 224, 278, 284, 293, 443, 452
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	122, 227
BstV1I	GCAGC	2 cut(s)	265, 430
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	214
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	55, 172, 184
CviAII	CATG	4 cut(s)	76, 93, 141, 259
CviJI	RGCY	9 cut(s)	39, 113, 134, 168, 178, 245, 257, 278, 374
CviKI_1	RGCY	9 cut(s)	39, 113, 134, 168, 178, 245, 257, 278, 374
CviQI	GTAC	3 cut(s)	55, 172, 184
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	4 cut(s)	9, 19, 52, 308
DpnII	GATC	4 cut(s)	7, 17, 50, 306
Eco32I	GATATC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	315
Esp3I	CGTCTC	2 cut(s)	79, 204
FaeI	CATG	4 cut(s)	79, 96, 144, 262
FaiI	YATR	6 cut(s)	68, 77, 94, 142, 260, 302
FatI	CATG	4 cut(s)	75, 92, 140, 258
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	273, 276, 279, 444
Fsp4HI	GCNGC	4 cut(s)	273, 276, 279, 444
GluI	GCNGC	4 cut(s)	273, 276, 279, 444
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	2 cut(s)	215, 293
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	79, 96, 144, 262
HinfI	GANTC	3 cut(s)	72, 124, 494
HpaII	CCGG	2 cut(s)	215, 293
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	118, 186, 223
Hpy188III	TCNNGA	4 cut(s)	76, 207, 310, 351
Hpy8I	GTNNAC	3 cut(s)	118, 186, 223
HpyAV	CCTTC	2 cut(s)	348, 422
HpyCH4IV	ACGT	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 224, 278, 284, 293, 443, 452
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	79, 96, 144, 262
Kzo9I	GATC	4 cut(s)	7, 17, 50, 306
LmnI	GCTCC	3 cut(s)	183, 242, 254
LpnPI	CCDG	7 cut(s)	116, 143, 154, 194, 228, 295, 306
Lsp1109I	GCAGC	2 cut(s)	265, 430
MaeII	ACGT	1 cut(s)	188
MalI	GATC	4 cut(s)	9, 19, 52, 308
MboI	GATC	4 cut(s)	7, 17, 50, 306
MflI	RGATCY	1 cut(s)	7
MluI	ACGCGT	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	54, 148
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	158, 263
MspI	CCGG	2 cut(s)	215, 293
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	122, 227
MwoI	GCNNNNNNNGC	7 cut(s)	119, 224, 278, 284, 293, 443, 452
NdeII	GATC	4 cut(s)	7, 17, 50, 306
NlaIII	CATG	4 cut(s)	79, 96, 144, 262
NlaIV	GGNNCC	3 cut(s)	9, 256, 291
OliI	CACNNNNGTG	1 cut(s)	158
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	194, 200
PfeI	GAWTC	3 cut(s)	72, 124, 494
PkrI	GCNGC	4 cut(s)	274, 277, 280, 445
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	9, 256, 291
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	3 cut(s)	56, 173, 185
RsaNI	GTAC	3 cut(s)	55, 172, 184
RseI	CAYNNNNRTG	2 cut(s)	158, 263
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	273, 276, 279, 444
Sau3AI	GATC	4 cut(s)	7, 17, 50, 306
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	8 cut(s)	60, 115, 170, 180, 191, 247, 376, 417
SmiMI	CAYNNNNRTG	2 cut(s)	158, 263
SsiI	CCGC	7 cut(s)	218, 272, 275, 281, 287, 296, 446
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	4 cut(s)	32, 263, 350, 497
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	3 cut(s)	72, 124, 494
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	2 cut(s)	278, 443
TspDTI	ATGAA	1 cut(s)	460
TspGWI	ACGGA	2 cut(s)	103, 192
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.