MD17G1239700.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010947
Physical Location & Seq
Forward (+)
28901528 .. 28902049
522 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1239700.v1.1.491

Sequence Viewer

Length: 522 bp
ATGGCGGACACCACCGCAGCAGAAGAAGAGCAAGAAGCACCGCCGCCGCAGCCGCAGCCGCAGCCGCAGCCATCGTACTACACGGTGTTTCTGAGTATTATGAGCAAAAGGAGAACATGGGTATGTGTATTCGTGCTAGTATACGCCATCCTCCTAACTTCTTCATGGAATTTCCTCAAATCCTTGCTCTCCTGGCACAAATTGCAAGCCCAAGCGTCTTCGCCGTCGTACGGATGGCCTGCCCTTTACGCCTCGGTGCTTCTGGGGGTGGTTTTCGGGCTGCTTTCGATGTTCGCGGCGCTTGCAGTGATGGTTCCGGCGACTCTGGTGACGTGGATCGCCATCGTGGTTCTGCTGGCCTTCTTCGGGAAGCCGAGGAGGGCGTTGGTGGTTGACGGGAGGAAGATTACGAGAGAGATTGTTGGGATTGTGATGAGGATTTTGTTGAAGGAAGGGAATTTGGTGGCTGCTGGTTGTGCTGTTTTGGGGTATTTTGCACTTTTTAGGAGGAATGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.11

Weight (kDa)

9.59

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 296
AciI CCGC 9 cut(s) 5, 15, 41, 44, 47, 53, 59, 65, 296
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 2 cut(s) 169, 457
AfaI GTAC 2 cut(s) 77, 230
AfiI CCNNNNNNNGG 2 cut(s) 230, 366
AgsI TTSAA 1 cut(s) 448
AjiI CACGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 191
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 236, 357
ApeKI GCWGC 7 cut(s) 17, 49, 55, 61, 67, 280, 467
ApoI RAATTY 2 cut(s) 169, 457
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 7 cut(s) 29, 61, 67, 73, 79, 267, 454
BccI CCATC 5 cut(s) 79, 155, 228, 304, 350
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 252, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 366
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 252, 374
BseGI GGATG 2 cut(s) 147, 239
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 230, 366
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 7 cut(s) 29, 61, 67, 73, 79, 267, 454
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 238, 359
BsiSI CCGG 1 cut(s) 317
BsiWI CGTACG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 230, 366
BsnI GGCC 2 cut(s) 238, 359
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 9 cut(s) 5, 15, 41, 44, 47, 53, 59, 65, 296
BspANI GGCC 2 cut(s) 238, 359
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 252, 374
BssMI GATC 1 cut(s) 336
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 4 cut(s) 207, 240, 303, 357
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 147, 239
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 7 cut(s) 29, 61, 67, 73, 79, 267, 454
BstV2I GAAGAC 1 cut(s) 210
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 238, 359
BtrI CACGTC 1 cut(s) 333
BtsCI GGATG 2 cut(s) 147, 239
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 207, 240, 303, 357
CfoI GCGC 1 cut(s) 301
CseI GACGC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 76, 229
CviAII CATG 2 cut(s) 117, 165
CviQI GTAC 2 cut(s) 76, 229
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 120, 168
FaiI YATR 5 cut(s) 101, 118, 124, 142, 166
FatI CATG 2 cut(s) 116, 164
FblI GTMKAC 1 cut(s) 141
FokI GGATG 2 cut(s) 134, 246
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 238, 359
HapII CCGG 1 cut(s) 317
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 120, 168
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 142, 394
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 142, 394
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 370, 442, 446
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 205, 305, 497
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 2 cut(s) 120, 168
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 336
LguI GCTCTTC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 178, 205, 248, 252, 311, 330, 341, 456
Lsp1109I GCAGC 7 cut(s) 29, 61, 67, 73, 79, 267, 454
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 6 cut(s) 35, 38, 153, 210, 355, 415
MluCI AATT 3 cut(s) 169, 200, 457
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 8 cut(s) 161, 185, 262, 369, 372, 393, 429, 501
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 296
NdeII GATC 1 cut(s) 336
NlaIII CATG 2 cut(s) 120, 168
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 21
Pfl23II CGTACG 1 cut(s) 228
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 315
RsaI GTAC 2 cut(s) 77, 230
RsaNI GTAC 2 cut(s) 76, 229
RseI CAYNNNNRTG 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 336
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 193
SetI ASST 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 3 cut(s) 169, 200, 457
SsiI CCGC 9 cut(s) 5, 15, 41, 44, 47, 53, 59, 65, 296
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 287
TasI AATT 3 cut(s) 169, 200, 457
TauI GCSGC 6 cut(s) 46, 49, 55, 61, 67, 299
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 7 cut(s) 17, 49, 55, 61, 67, 280, 467
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 312
XapI RAATTY 2 cut(s) 169, 457
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.