Rw2G026040

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010947
Physical Location & Seq
Reverse (-)
39935083 .. 39936279
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026040.1

Sequence Viewer

Length: 528 bp
ATGGCAGACAAGAGTGAGGAAGAGCAAGACACAGCGGCGCCGCCGCCGCTCCCGCCCTCGTATTACTTGGTGTTCCTCAGAATCATGAGCAAAAGGAGAACCTGGGTATGTATTTTTGTGCTAGTCTATGCGATCCTCTTAACTAGCTCATGGAATTTCCTCAAATCCATACTCTCCTGGTACAAATTACAAGGCCAGCCTTCGCCGTCGTCATATGGGTGGCCCGCCCTCTACGCCTCCGTGCTCCTCGGCGCTGTTTTCGGGCTGCTCTCCATGTTTGCAGCGCTGGCTGTGATGGTGCCCGCCACTTTGGTTACGTGGATTGCGATTGTGGTTCTCTTGGCCTTCTTCGGGAAGCCCAGGACGAGTTTGGTCGTCGAAGGCAGGAAGATTACTAGAGAGATTGTTGGGATTGTGTTCAAGATTTTGTTGAAGGAAGGTAATTTGGTGGCTGCTGTTTGTGCTATTGTGGGCTATTTTGCACTTTTCAGGAGGAATGGGAATGCTGCCCCTGACCTCATTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.33

Weight (kDa)

9.48

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 37, 298
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 7 cut(s) 35, 41, 44, 47, 53, 225, 303
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 421, 433
AjnI CCWGG 3 cut(s) 101, 176, 359
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 285
AoxI GGCC 3 cut(s) 193, 221, 342
ApeKI GCWGC 4 cut(s) 265, 281, 452, 506
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 3 cut(s) 40, 254, 286
AspS9I GGNCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 303
BanI GGYRCC 2 cut(s) 37, 298
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 252, 293, 439, 493
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 3 cut(s) 103, 178, 361
BfaI CTAG 3 cut(s) 122, 144, 396
BfoI RGCGCY 3 cut(s) 41, 255, 287
BisI GCNGC 8 cut(s) 36, 41, 44, 47, 266, 282, 453, 507
BlsI GCNGC 8 cut(s) 37, 42, 45, 48, 267, 283, 454, 508
Bme1390I CCNGG 3 cut(s) 103, 178, 361
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 39, 300
BmrFI CCNGG 3 cut(s) 103, 178, 361
BsaAI YACGTR 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 102, 247, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 351
BseBI CCWGG 3 cut(s) 103, 178, 361
BseDI CCNNGG 3 cut(s) 102, 247, 359
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 4 cut(s) 252, 293, 439, 493
BshFI GGCC 3 cut(s) 195, 223, 344
BshNI GGYRCC 2 cut(s) 37, 298
BsiHKAI GWGCWC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 351
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 3 cut(s) 195, 223, 344
Bsp1286I GDGCHC 2 cut(s) 246, 303
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 7 cut(s) 35, 41, 44, 47, 53, 225, 303
BspANI GGCC 3 cut(s) 195, 223, 344
BspCNI CTCAG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 39, 300
BspPI GGATC 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 2 cut(s) 37, 298
BsrBI CCGCTC 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 102, 247, 359
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 3 cut(s) 103, 178, 361
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 197, 225, 288, 303
BstDEI CTNAG 1 cut(s) 77
BstH2I RGCGCY 3 cut(s) 41, 255, 287
BstHHI GCGC 3 cut(s) 40, 254, 286
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 5 cut(s) 46, 52, 233, 287, 461
BstNI CCWGG 3 cut(s) 103, 178, 361
BstSCI CCNGG 3 cut(s) 101, 176, 359
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 4 cut(s) 252, 293, 439, 493
BsuRI GGCC 3 cut(s) 195, 223, 344
Cac8I GCNNGC 4 cut(s) 197, 225, 288, 303
CciI TCATGA 1 cut(s) 84
CfoI GCGC 3 cut(s) 40, 254, 286
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 85, 150, 274
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 77
DinI GGCGCC 1 cut(s) 39
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco47III AGCGCT 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 101, 176, 359
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaeI CATG 3 cut(s) 88, 153, 277
FaiI YATR 8 cut(s) 86, 109, 129, 151, 170, 214, 216, 275
FatI CATG 3 cut(s) 84, 149, 273
FauI CCCGC 3 cut(s) 60, 232, 310
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 8 cut(s) 36, 41, 44, 47, 266, 282, 453, 507
Fsp4HI GCNGC 8 cut(s) 36, 41, 44, 47, 266, 282, 453, 507
FspBI CTAG 3 cut(s) 122, 144, 396
GlaI GCGC 3 cut(s) 39, 253, 285
GluI GCNGC 8 cut(s) 36, 41, 44, 47, 266, 282, 453, 507
HaeII RGCGCY 3 cut(s) 41, 255, 287
HaeIII GGCC 3 cut(s) 195, 223, 344
HhaI GCGC 3 cut(s) 40, 254, 286
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 88, 153, 277
Hin6I GCGC 3 cut(s) 38, 252, 284
HinP1I GCGC 3 cut(s) 38, 252, 284
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 85, 352, 421, 490
Hpy99I CGWCG 2 cut(s) 211, 380
HpyAV CCTTC 5 cut(s) 210, 355, 374, 427, 431
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 281, 482
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 52, 233, 287, 461
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 88, 153, 277
HspAI GCGC 3 cut(s) 38, 252, 284
KasI GGCGCC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 54, 249
Lsp1109I GCAGC 4 cut(s) 252, 293, 439, 493
MaeI CTAG 3 cut(s) 122, 144, 396
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 32, 340, 400
MhlI GDGCHC 2 cut(s) 246, 303
MluCI AATT 3 cut(s) 154, 185, 442
Mly113I GGCGCC 1 cut(s) 38
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 103, 178, 361
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 3 cut(s) 103, 178, 361
MwoI GCNNNNNNNGC 5 cut(s) 46, 52, 233, 287, 461
NarI GGCGCC 1 cut(s) 38
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 132
NlaIII CATG 3 cut(s) 88, 153, 277
NlaIV GGNNCC 2 cut(s) 39, 300
NmeAIII GCCGAG 1 cut(s) 228
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 8 cut(s) 37, 42, 45, 48, 267, 283, 454, 508
PluTI GGCGCC 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 101, 176, 359
PspGI CCWGG 3 cut(s) 101, 176, 359
PspN4I GGNNCC 2 cut(s) 39, 300
PspPI GGNCC 1 cut(s) 222
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 8 cut(s) 36, 41, 44, 47, 266, 282, 453, 507
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 103, 178, 361
SduI GDGCHC 2 cut(s) 246, 303
SetI ASST 5 cut(s) 104, 149, 320, 442, 519
SfoI GGCGCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 3 cut(s) 154, 185, 442
SsiI CCGC 7 cut(s) 35, 41, 44, 47, 53, 225, 303
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 3 cut(s) 122, 144, 396
StyD4I CCNGG 3 cut(s) 101, 176, 359
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 378
TasI AATT 3 cut(s) 154, 185, 442
TauI GCSGC 4 cut(s) 38, 43, 46, 49
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 4 cut(s) 265, 281, 452, 506
TspGWI ACGGA 1 cut(s) 229
XapI RAATTY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 3 cut(s) 122, 144, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.