Rorug02G0264200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010947
Physical Location & Seq
Reverse (-)
27898202 .. 27899004
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0264200.1

Sequence Viewer

Length: 651 bp
ATGAATTATGATGAAGTGACTACTCATGCCGCAAATGTTGAGACTGAGGTGGTTGATGTGAATGAGACTGTGGCTGATTCTGAACTGCCTGAAAAGACCATTGATGACAATAATAATGGACAATCCCCTACTATTGTGAAATTGTGGCAGAGTTTCCAAGAGAAAAACAAGAAGATCCCAAGCCCTACCAAAGACAAGCACACCAATACCCCTACTGGTGTCTCCTCTTGCAAGCAACCTGCTGCTGAGAAAGCCTCTCATCCCATGAACAAAACCACTGGCCCCAAATCTAAGAACCTTCCAAGAGCCCCAATGAAGGATGTGTCCAATTTTGGAAGCTGCAGTGGGTCTAAGACTGACCTGCACTATCAGAGAAAGACCAAAGGGCTGCCTAATTCTGTGATTAAACATCAGACTCATGTTTTCAAAAAACTTTCCTTTGAAAAGGTGAGCTCTAATGTTCTGGGGGATGGAATTTCAGCCATTTTTGGGCATACTCCCCCTGATGAGCATTCTATTCAACCTAATATACAAAGTTTCCTTGTTCATGATGCTGAAAAATTTGTGGAAAATATTTTTGCTGACAATAGCATGTTGACCATTGATGATAACCTGCCCTCCCAAAATGGTGAGGGCATGGTTGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.68

Weight (kDa)

5.97

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03730 AT4G03600
fragaria_vesca FvH4_6g26280 FvH4_6g26280
malus_domestica MD09G1246800.v1.1 MD17G1239700.v1.1
prunus_persica Prupe.3G132300_v2.0.a1
pyrus_communis pycom09g16410
rosa_chinensis RchiOBHm_Chr2g0126711
rosa_laevigata RLG00000018916
rosa_multiflora Rmu_sc0002369.1_g000001
rosa_roxburghii Rroxscaffold_2G00117040
rosa_rugosa Rorug02G0264200 Rorug05G0148300 Rorug05G0169300
rosa_samantha Rh2AG321300 Rh2BG329500 Rh2CG309200 Rh2DG348800
rosa_wichuraiana Rw2G026040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 247, 369, 621
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 474, 560
AfiI CCNNNNNNNGG 2 cut(s) 316, 489
AgsI TTSAA 3 cut(s) 427, 443, 521
AluBI AGCT 2 cut(s) 339, 453
AluI AGCT 2 cut(s) 339, 453
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 3 cut(s) 35, 59, 226
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 242, 339, 388
ApoI RAATTY 2 cut(s) 474, 560
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 460, 641
BanII GRGCYC 2 cut(s) 310, 455
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 229, 326, 375
BccI CCATC 1 cut(s) 464
BcoDI GTCTC 3 cut(s) 35, 59, 226
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 3 cut(s) 247, 369, 621
BisI GCNGC 4 cut(s) 30, 243, 340, 389
BlsI GCNGC 4 cut(s) 31, 244, 341, 390
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 541, 634
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 489
Bse1I ACTGG 2 cut(s) 220, 283
BseGI GGATG 3 cut(s) 259, 325, 475
BseLI CCNNNNNNNGG 2 cut(s) 316, 489
BseMII CTCAG 2 cut(s) 36, 237
BseNI ACTGG 2 cut(s) 220, 283
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 3 cut(s) 229, 326, 375
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 316, 489
BsmAI GTCTC 3 cut(s) 35, 59, 226
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 310, 455
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 2 cut(s) 37, 238
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 344
BspMI ACCTGC 3 cut(s) 247, 369, 621
BspPI GGATC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 220, 283
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 4 cut(s) 45, 246, 291, 351
BstF5I GGATG 3 cut(s) 259, 325, 475
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 3 cut(s) 35, 59, 226
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 229, 326, 375
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 3 cut(s) 259, 325, 475
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 276, 349
BveI ACCTGC 3 cut(s) 247, 369, 621
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 6 cut(s) 26, 265, 419, 548, 592, 637
CviJI RGCY 9 cut(s) 74, 183, 254, 282, 308, 339, 388, 453, 482
CviKI_1 RGCY 9 cut(s) 74, 183, 254, 282, 308, 339, 388, 453, 482
DdeI CTNAG 4 cut(s) 45, 246, 291, 351
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 453
Eco24I GRGCYC 2 cut(s) 310, 455
Eco53kI GAGCTC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 310, 455
FaeI CATG 6 cut(s) 29, 268, 422, 551, 595, 640
FaiI YATR 9 cut(s) 9, 27, 266, 420, 495, 530, 549, 593, 638
FatI CATG 6 cut(s) 25, 264, 418, 547, 591, 636
Fnu4HI GCNGC 4 cut(s) 30, 243, 340, 389
FokI GGATG 3 cut(s) 246, 332, 482
FriOI GRGCYC 2 cut(s) 310, 455
Fsp4HI GCNGC 4 cut(s) 30, 243, 340, 389
GluI GCNGC 4 cut(s) 30, 243, 340, 389
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 6 cut(s) 29, 268, 422, 551, 595, 640
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 2 cut(s) 77, 415
HphI GGTGA 2 cut(s) 460, 641
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 3 cut(s) 82, 372, 414
Hpy188III TCNNGA 1 cut(s) 548
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 2 cut(s) 308, 310
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 231, 342, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 45, 246, 291, 351
Hsp92II CATG 6 cut(s) 29, 268, 422, 551, 595, 640
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 8 cut(s) 102, 201, 252, 264, 374, 449, 516, 626
Lsp1109I GCAGC 3 cut(s) 229, 326, 375
LweI GCATC 2 cut(s) 541, 634
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 310, 455
MluCI AATT 6 cut(s) 4, 140, 328, 394, 474, 560
MlyI GAGTC 1 cut(s) 409
MnlI CCTC 5 cut(s) 40, 235, 265, 625, 628
MseI TTAA 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 511
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 174
NlaIII CATG 6 cut(s) 29, 268, 422, 551, 595, 640
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 547
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 31, 244, 341, 390
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 174
SacI GAGCTC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 4 cut(s) 30, 243, 340, 389
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 409
SduI GDGCHC 2 cut(s) 310, 455
SetI ASST 9 cut(s) 51, 241, 300, 341, 363, 450, 455, 526, 615
SfaNI GCATC 2 cut(s) 541, 634
SfcI CTRYAG 1 cut(s) 340
Sse9I AATT 6 cut(s) 4, 140, 328, 394, 474, 560
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 574
SstI GAGCTC 1 cut(s) 455
TaaI ACNGT 1 cut(s) 70
TasI AATT 6 cut(s) 4, 140, 328, 394, 474, 560
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 2 cut(s) 283, 349
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 3 cut(s) 242, 339, 388
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 5 cut(s) 17, 27, 281, 329, 536
TspRI CASTG 2 cut(s) 283, 349
XapI RAATTY 2 cut(s) 474, 560
XceI RCATGY 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.